genome.fa.s13.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  73  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13896975--13897013	20	1.9	20	84	5	51	71	10	0	17	1.12
13896978--13897033	26	2.2	26	80	6	60	75	7	5	12	1.18
13897269--13897308	19	2.1	19	85	4	53	40	20	17	22	1.92
13897371--13897420	19	2.6	19	84	12	66	50	20	12	18	1.78
13897871--13897925	3	19.0	3	75	14	53	63	0	0	36	0.95
13898087--13898225	40	3.5	39	80	5	106	42	19	12	25	1.86
13898099--13898225	38	3.3	38	80	9	148	42	20	11	25	1.85
13898076--13898226	78	1.9	80	86	2	216	41	20	12	25	1.88
13898392--13898463	33	2.2	33	89	0	108	41	22	12	23	1.88
13898151--13898636	205	2.4	204	90	1	733	39	18	13	28	1.89
13898573--13898682	40	2.8	40	88	0	157	42	20	11	25	1.86
13910682--13910876	94	2.1	95	89	1	293	36	13	7	42	1.73
13911234--13911275	16	2.7	15	82	17	50	14	4	7	73	1.21
13911346--13911390	24	1.9	24	90	4	74	77	6	2	13	1.05
13911345--13911395	14	4.0	14	78	21	58	74	9	1	13	1.15
13911368--13911416	14	3.6	14	78	10	57	77	10	0	12	0.99
13911725--13911798	20	3.7	20	83	0	94	51	16	9	22	1.73
13916771--13916808	20	1.9	20	88	0	58	50	7	13	28	1.69
13919470--13919592	64	1.9	65	80	5	142	36	12	11	39	1.79
13919686--13919791	39	2.7	39	85	4	142	35	14	9	40	1.78
13919687--13919810	40	3.1	39	73	6	115	34	12	8	45	1.71
13920072--13920275	99	2.1	99	88	3	304	38	6	8	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13920091--13920346	99	2.6	97	80	6	271	41	7	8	42	1.63
13920291--13920409	63	1.9	63	82	1	148	34	7	12	45	1.71
13922347--13922371	5	5.0	5	100	0	50	80	0	0	20	0.72
13928854--13928955	44	2.3	44	83	3	116	24	12	16	46	1.82
13930179--13930221	22	1.9	22	85	4	59	20	34	16	27	1.94
13930285--13930338	24	2.2	26	81	18	62	16	3	5	74	1.16
13930380--13930424	21	2.1	21	84	8	56	40	6	6	46	1.56
13930469--13930506	18	2.1	18	90	0	58	31	5	13	50	1.63
13933466--13933508	19	2.3	18	84	8	50	18	0	30	51	1.47
13936061--13936107	19	2.6	18	77	16	51	21	2	25	51	1.59
13936049--13936139	18	5.1	18	67	22	59	17	4	27	50	1.65
13936088--13936155	32	2.2	31	91	2	109	13	5	29	51	1.64
13936088--13936148	19	3.6	18	68	25	51	13	4	29	52	1.61
13936088--13936229	74	1.9	76	86	5	209	14	6	28	50	1.66
13938867--13939085	120	1.8	121	83	6	293	52	7	12	27	1.66
13942263--13942327	9	7.1	9	74	22	55	78	0	15	6	0.94
13943851--13944059	41	5.0	41	82	5	224	23	12	20	43	1.86
13946147--13946245	51	1.9	50	80	8	110	52	11	10	26	1.68
13946331--13946389	31	1.9	31	85	0	82	50	5	6	37	1.51
13947678--13947761	10	8.3	10	78	10	82	29	11	19	39	1.87
13947680--13947727	20	2.4	20	100	0	96	29	10	20	39	1.86
13951395--13951432	20	1.9	20	84	10	51	73	2	5	18	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13952397--13953097	113	6.2	112	75	8	479	34	12	6	46	1.68
13952433--13953090	228	2.9	223	74	10	602	34	12	7	46	1.68
13952474--13953215	111	6.6	111	75	7	501	35	11	6	45	1.67
13952451--13953214	338	2.3	342	80	6	763	35	11	6	45	1.67
13953933--13953972	21	1.9	21	84	0	53	27	12	17	42	1.85
13955179--13955266	26	3.4	26	79	14	101	18	9	20	52	1.72
13955204--13955266	13	4.8	14	73	9	53	19	9	20	50	1.74
13955383--13955435	23	2.3	23	87	3	72	35	0	0	64	0.94
13955393--13955431	12	3.3	12	82	7	53	30	0	0	69	0.89
13955466--13955492	3	9.0	3	100	0	54	33	0	0	66	0.92
13955549--13955576	3	9.3	3	100	0	56	32	0	0	67	0.91
13957444--13957488	20	2.2	20	80	7	56	17	4	2	75	1.07
13960582--13960646	20	3.3	19	80	6	76	9	3	41	46	1.51
13963226--13963287	16	3.8	16	72	10	54	40	9	14	35	1.79
13966095--13966137	21	2.1	20	87	12	61	32	20	0	46	1.51
13972525--13972551	11	2.5	11	100	0	54	29	7	0	62	1.22
13972912--13972969	25	2.3	25	84	0	71	10	22	0	67	1.21
13972930--13972968	20	2.0	20	90	5	62	7	23	0	69	1.14
13977861--13977895	13	2.7	13	86	0	52	51	0	0	48	1.00
13977987--13978035	13	4.2	13	75	24	56	48	0	0	51	1.00
13977978--13978054	33	2.3	32	80	10	93	58	0	0	41	0.98
13978031--13978079	22	2.1	24	85	11	66	71	4	0	24	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13978028--13978063	20	1.9	20	88	11	58	72	0	0	27	0.85
13979136--13979166	13	2.3	14	94	5	55	48	0	0	51	1.00
13979892--13980023	61	2.1	62	82	10	155	43	8	12	36	1.72
13989608--13989646	11	3.5	11	96	3	69	43	7	0	48	1.31
13993790--13994172	155	2.4	157	80	3	396	28	8	18	44	1.79
13995956--13995984	13	2.2	13	100	0	58	17	0	27	55	1.42
13998384--13998694	41	7.5	41	82	6	329	44	19	11	24	1.83
13998379--13998687	83	3.7	84	81	7	349	45	18	11	24	1.82
13998892--13998935	23	2.0	22	86	4	61	34	15	15	34	1.90
13999165--13999249	25	3.6	25	81	12	106	35	10	9	44	1.71
13999187--13999226	21	1.9	21	100	0	80	40	15	5	40	1.68
13999209--13999249	14	3.1	14	73	20	52	31	9	9	48	1.69
13999156--13999249	46	2.0	47	87	2	136	36	11	8	43	1.72
13999373--13999427	22	2.5	22	80	8	60	41	14	7	36	1.74
13999760--13999803	23	2.0	22	82	13	54	27	22	4	45	1.72
14000736--14000780	1	45.0	1	81	0	54	6	2	0	91	0.50
14000743--14000779	8	4.8	8	96	3	67	8	0	0	91	0.41
14001498--14001550	26	2.0	26	100	0	106	41	0	7	50	1.30
14005950--14006000	26	2.0	26	84	7	68	5	9	9	74	1.21
14008043--14008095	8	6.4	8	77	14	54	3	1	11	83	0.87
14008043--14008108	26	2.7	25	80	11	75	4	4	9	81	0.96
14008393--14008487	32	2.9	32	74	10	95	33	12	12	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14008439--14008719	66	4.3	66	77	6	257	29	14	18	37	1.90
14008587--14008663	32	2.4	33	80	6	86	28	15	22	33	1.94
14008494--14008763	132	2.1	130	80	9	291	30	14	20	35	1.92
14009383--14009476	3	32.3	3	71	14	63	28	2	2	67	1.14
14009383--14009437	20	2.5	23	77	14	71	34	0	3	61	1.13
14011712--14011741	8	3.9	8	91	8	53	10	0	0	90	0.47
14011712--14011740	15	1.9	15	100	0	58	10	0	0	89	0.48
14013368--14013392	11	2.3	11	100	0	50	0	8	0	92	0.40
14018190--14018229	6	6.3	6	83	11	53	20	0	0	80	0.72
14018689--14018739	7	7.6	7	75	16	54	29	1	0	68	1.00
14018674--14018739	13	5.1	13	70	23	50	28	1	0	69	0.97
14018897--14018939	9	5.0	9	91	2	54	30	0	0	69	0.88
14020806--14020868	18	3.4	18	81	18	60	19	4	1	74	1.08
14022594--14022654	14	4.4	14	75	4	52	47	37	1	13	1.52
14022594--14022814	13	16.9	12	68	19	81	46	34	1	17	1.58
14022618--14022863	19	12.8	19	66	21	95	46	34	2	17	1.60
14022618--14022863	6	38.5	6	69	22	105	46	34	2	17	1.60
14024584--14024624	15	2.6	16	85	14	50	78	2	2	17	0.98
14024683--14024717	15	2.2	16	95	5	63	40	0	5	54	1.24
14024683--14024718	16	2.2	16	95	0	63	41	0	5	52	1.24
14024656--14025183	61	8.7	60	81	11	612	35	12	5	46	1.66
14025208--14025370	5	32.4	5	70	21	62	74	3	2	19	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025208--14025288	17	5.1	15	73	13	65	79	2	4	13	1.01
14025211--14025371	11	14.8	11	70	17	72	74	3	2	19	1.08
14025310--14025361	4	12.8	4	88	11	79	75	0	0	25	0.81
14025310--14025370	20	2.9	21	90	7	97	77	0	0	22	0.78
14026235--14026280	22	2.1	22	88	8	67	69	2	4	23	1.17
14026299--14026395	4	24.8	4	72	22	64	72	1	1	25	0.98
14026203--14026395	62	3.1	59	80	14	169	68	1	3	26	1.15
14026191--14026395	66	3.2	64	79	11	183	68	1	3	26	1.13
14026299--14026395	34	2.7	33	75	21	72	72	1	1	25	0.98
14026635--14026683	6	8.8	6	82	14	61	0	2	12	85	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129