genome.fa.s13.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  103  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18730224--18730269	23	1.9	24	86	8	67	26	0	4	69	1.07
18733038--18733093	24	2.3	24	100	0	112	28	21	19	30	1.98
18735439--18735480	16	2.7	15	80	20	50	73	0	2	23	0.94
18739813--18739860	7	6.7	7	77	13	53	68	0	29	2	1.01
18745823--18745889	28	2.4	28	80	11	68	49	7	11	31	1.67
18746852--18746906	25	2.3	22	77	17	56	56	1	5	36	1.33
18751201--18751321	58	2.0	57	82	7	143	32	3	24	39	1.72
18752159--18752223	32	2.0	32	90	0	103	43	16	7	32	1.77
18760040--18760071	12	2.6	13	90	9	50	46	0	0	53	1.00
18760554--18760605	21	2.5	21	88	11	81	48	0	0	51	1.00
18760569--18760636	30	2.4	27	77	15	73	55	1	0	42	1.08
18760571--18760646	28	2.7	29	73	15	70	55	1	0	43	1.08
18762926--18762986	33	1.9	31	83	12	79	65	0	3	31	1.09
18762945--18762983	20	2.0	20	90	5	62	64	0	0	35	0.94
18763764--18763810	14	3.3	14	93	3	76	53	0	6	40	1.27
18763948--18763987	15	2.6	15	80	4	53	47	0	5	47	1.24
18763948--18763988	16	2.6	17	77	14	52	48	0	4	46	1.23
18764078--18764169	22	4.3	22	78	12	93	45	0	1	53	1.07
18764100--18764254	40	4.1	40	70	17	114	50	0	1	47	1.17
18764348--18764394	22	2.2	21	84	3	58	31	2	2	63	1.18
18764361--18764409	19	2.6	18	75	9	53	42	2	0	55	1.11
18765389--18765428	11	3.6	11	86	0	62	15	0	32	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18765386--18765428	22	2.0	22	100	0	86	18	0	32	48	1.48
18765453--18765598	52	2.8	52	85	4	179	43	8	21	26	1.82
18766142--18766224	25	3.4	24	78	8	78	37	9	34	18	1.83
18766142--18766253	49	2.3	50	81	4	129	35	8	35	20	1.82
18766182--18766255	24	3.0	25	80	11	89	33	6	37	21	1.80
18766294--18766330	18	2.0	19	89	5	58	32	13	35	18	1.90
18766504--18766541	11	3.5	11	85	0	58	15	0	31	52	1.43
18766568--18766713	52	2.8	52	85	2	177	43	8	21	26	1.82
18769113--18769168	28	2.0	28	92	0	94	26	10	3	58	1.48
18774651--18774692	19	2.3	19	83	4	50	57	14	11	16	1.66
18776254--18776283	8	3.8	8	95	0	51	40	0	6	53	1.27
18776312--18776350	20	1.9	20	84	5	51	30	2	0	66	1.05
18777220--18777920	130	5.4	129	79	7	636	39	7	9	42	1.67
18777220--18777913	261	2.7	255	81	5	761	39	7	9	42	1.67
18781191--18781265	38	2.0	37	86	2	105	34	10	8	46	1.68
18782294--18782587	103	2.9	100	81	3	320	39	8	12	39	1.74
18786187--18786246	30	2.0	30	81	9	70	53	5	0	41	1.23
18786883--18786926	15	2.7	15	86	13	61	70	0	4	25	1.06
18786930--18786968	20	2.0	20	94	0	69	41	2	5	51	1.38
18787031--18787095	19	3.5	19	71	21	57	30	1	4	63	1.24
18787040--18787155	9	12.4	9	69	22	53	31	2	2	63	1.21
18787057--18787136	20	4.2	20	66	18	55	31	2	2	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18787027--18787155	37	3.5	37	71	15	106	32	2	3	62	1.24
18787123--18787192	32	2.2	32	82	14	83	31	4	4	60	1.36
18790611--18790637	13	2.1	13	100	0	54	37	29	0	33	1.58
18796180--18796227	2	24.0	2	86	0	69	52	4	0	43	1.20
18799161--18799338	54	3.4	54	70	12	181	38	11	20	29	1.87
18799095--18799338	102	2.4	102	94	0	416	39	11	18	29	1.87
18800443--18800488	23	2.0	23	91	0	74	63	17	0	19	1.32
18801408--18801433	4	6.5	4	100	0	52	76	0	0	23	0.78
18801726--18801756	16	1.9	16	93	0	53	45	12	9	32	1.75
18804119--18804186	28	2.4	27	85	9	84	45	1	2	50	1.26
18804137--18804206	28	2.5	28	83	6	79	44	4	4	47	1.42
18805161--18805251	28	3.1	29	83	12	107	51	1	1	46	1.15
18806314--18806342	14	2.0	15	93	6	51	3	55	0	41	1.17
18808956--18809003	16	2.9	16	87	6	60	29	4	0	66	1.10
18810388--18810427	20	2.1	19	86	9	55	35	0	0	65	0.93
18812966--18813019	28	2.0	28	89	7	85	55	7	0	37	1.28
18813019--18813052	14	2.3	15	85	5	52	55	0	0	44	0.99
18813153--18813217	28	2.3	28	81	5	78	61	0	4	33	1.16
18813287--18813325	15	2.5	15	83	8	51	51	5	0	43	1.24
18813564--18813596	17	2.0	17	88	5	50	39	0	3	57	1.14
18813518--18813923	10	41.2	9	66	17	127	33	2	6	57	1.39
18813827--18813891	29	2.2	29	81	8	78	40	0	7	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18813829--18813873	19	2.3	20	92	3	74	35	0	6	57	1.25
18813711--18813929	100	2.2	101	81	4	248	36	2	7	53	1.41
18818435--18818476	17	2.5	17	76	3	50	52	0	2	45	1.13
18819277--18819643	61	6.1	60	79	10	340	35	10	5	48	1.60
18819361--18819392	14	2.3	14	100	0	64	37	0	0	62	0.95
18819449--18819638	57	3.3	57	83	5	231	33	10	5	51	1.58
18820152--18820191	21	1.9	21	90	10	64	62	10	7	20	1.50
18820998--18821275	58	4.8	58	83	10	338	37	7	2	52	1.44
18820998--18821275	114	2.4	114	88	7	402	37	7	2	52	1.44
18821372--18821418	3	15.7	3	90	0	76	63	0	4	31	1.13
18822279--18822318	5	7.8	5	84	15	55	82	0	0	17	0.67
18822510--18822823	42	7.5	42	87	2	409	46	12	12	28	1.78
18822509--18822814	165	1.8	166	87	4	456	46	12	12	28	1.78
18823185--18823242	21	2.8	21	86	0	71	39	13	6	39	1.72
18823673--18823794	63	1.9	63	81	6	149	28	24	13	33	1.93
18824398--18824474	6	12.7	6	78	18	72	10	5	0	84	0.77
18824398--18824476	1	79.0	1	71	0	50	10	5	0	84	0.75
18824399--18824471	25	3.0	24	80	15	87	10	5	0	83	0.80
18824399--18824476	33	2.5	31	76	13	81	10	5	0	84	0.76
18824409--18824476	8	8.4	8	78	13	68	8	5	0	85	0.75
18824403--18824477	29	2.7	26	74	20	80	9	6	0	84	0.79
18824399--18824476	31	2.6	29	78	10	68	10	5	0	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18827491--18827928	57	7.6	57	81	6	470	35	13	7	43	1.71
18827952--18828089	5	26.8	5	71	16	63	73	2	1	22	1.01
18827958--18828077	10	11.7	10	72	18	77	74	2	0	22	0.99
18827958--18828090	11	11.3	11	73	22	85	74	2	0	22	0.98
18828034--18828089	27	2.1	27	86	6	78	75	0	0	25	0.81
18828042--18828096	17	3.1	16	80	15	56	78	0	1	20	0.85
18828577--18828618	17	2.4	18	88	4	59	76	2	2	19	1.01
18828611--18828670	22	3.0	21	80	11	72	65	6	5	23	1.37
18828633--18828672	11	3.5	12	75	25	50	62	5	5	27	1.37
18828756--18828839	6	14.0	6	74	16	59	78	1	3	16	0.95
18828751--18828808	22	2.5	22	86	5	80	77	0	3	18	0.91
18828760--18828808	16	3.0	16	82	8	55	79	0	2	18	0.83
18828756--18828834	29	2.7	28	81	12	88	78	1	2	17	0.93
18830417--18830452	15	2.5	15	90	4	56	50	0	0	50	1.00
18830392--18830514	58	2.1	59	92	1	203	40	7	3	48	1.47
18830392--18830482	27	3.2	27	65	22	69	41	9	2	46	1.49
18830586--18830617	3	10.7	3	100	0	64	68	0	0	31	0.90
18831355--18831398	13	3.7	12	85	14	56	79	2	0	18	0.83
18831355--18831402	21	2.3	21	82	13	55	79	2	0	18	0.84
18849951--18849988	2	19.0	2	94	0	67	50	0	2	47	1.15
18856447--18856508	25	2.4	25	82	15	81	41	4	4	48	1.46
18857356--18857391	7	5.3	7	90	6	56	77	11	0	11	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18858734--18858772	13	3.0	13	80	0	51	41	0	0	58	0.98
18858810--18858852	19	2.3	19	88	8	61	67	2	2	27	1.15
18860333--18860399	24	3.0	23	71	16	59	47	1	4	46	1.31
18860441--18860492	12	5.0	11	72	27	51	48	0	0	51	1.00
18865163--18865428	145	1.8	145	84	3	365	33	13	12	40	1.82
18865905--18865957	27	2.0	27	88	3	81	54	7	30	7	1.56
18865943--18865982	20	1.9	20	85	10	53	72	0	20	7	1.08
18866019--18866044	13	2.0	13	100	0	52	7	15	7	69	1.35
18866471--18866513	21	2.0	21	90	0	68	18	6	16	58	1.60
18869488--18869637	68	2.2	68	94	3	259	39	8	15	36	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129