genome.fa.s13.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  65  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12382886--12382930	10	4.1	10	79	20	54	0	17	0	82	0.68
12383123--12383169	20	2.3	21	81	3	60	51	2	2	44	1.25
12384847--12385656	407	2.0	407	98	0	1557	36	12	19	31	1.90
12386612--12386671	31	2.0	30	83	3	75	38	6	15	40	1.73
12390570--12390616	24	1.9	25	83	12	62	19	4	8	68	1.33
12393831--12393917	42	2.1	42	100	0	174	25	24	13	36	1.92
12395447--12395480	16	2.1	17	88	5	52	64	8	0	26	1.22
12398060--12398100	17	2.4	18	80	12	50	36	9	2	51	1.48
12408421--12408445	12	2.1	12	100	0	50	52	0	8	40	1.31
12413698--12414107	101	4.0	101	81	3	412	42	19	7	30	1.79
12414067--12414151	44	1.9	44	87	0	125	48	17	8	25	1.75
12418431--12418484	24	2.2	24	90	0	81	35	7	9	48	1.63
12420055--12420101	24	2.0	24	84	12	62	57	4	0	38	1.18
12424626--12424815	62	3.2	61	65	14	160	54	4	4	36	1.41
12424625--12424838	118	1.8	118	94	2	385	53	4	4	38	1.40
12426606--12426792	96	1.9	96	93	2	322	31	10	14	43	1.79
12431060--12431088	13	2.2	13	100	0	58	93	6	0	0	0.36
12435041--12435139	32	3.1	32	74	11	87	52	13	17	17	1.75
12435054--12435139	31	2.7	31	80	1	100	52	15	15	17	1.75
12435185--12435284	37	2.7	37	87	0	137	38	11	23	28	1.88
12435777--12435819	20	2.2	20	87	8	61	46	16	9	27	1.77
12436922--12437103	3	60.7	3	78	0	121	21	2	12	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12440133--12440205	37	2.0	37	86	0	101	34	15	9	41	1.79
12441308--12441349	21	2.0	21	86	9	59	19	2	38	40	1.64
12442200--12442262	17	3.7	16	75	12	54	73	1	6	19	1.13
12442224--12442262	18	2.2	18	86	9	53	76	2	2	17	1.01
12447100--12447153	18	3.1	18	78	13	67	44	11	1	42	1.50
12447713--12447754	22	1.9	22	85	0	57	52	2	7	38	1.42
12451304--12451344	21	2.0	21	85	9	57	19	7	0	73	1.07
12452323--12452375	20	2.7	20	82	8	63	81	1	3	13	0.92
12452328--12452375	10	4.8	10	75	10	53	83	2	4	10	0.87
12455021--12455059	17	2.4	17	86	4	53	61	0	12	25	1.31
12461833--12461883	26	2.0	25	92	3	84	35	31	9	23	1.87
12465123--12465156	16	2.1	16	88	0	50	52	5	2	38	1.41
12468609--12468636	14	2.0	14	100	0	56	42	35	7	14	1.73
12475004--12475064	19	3.2	19	76	17	63	8	1	11	78	1.02
12475498--12476045	141	3.9	142	90	3	813	43	14	22	20	1.87
12475498--12476087	210	2.8	207	88	4	769	43	14	22	19	1.87
12475498--12476065	69	8.1	69	88	4	741	42	14	22	20	1.88
12477143--12477189	8	5.8	8	90	5	76	10	8	0	80	0.89
12477142--12477190	9	5.8	9	86	13	77	10	8	0	81	0.87
12477143--12477190	17	2.9	17	96	3	89	10	8	0	81	0.88
12477142--12477189	25	1.9	25	95	0	87	10	8	0	81	0.88
12477143--12477198	17	3.4	17	90	2	87	8	7	1	82	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12477142--12477210	8	8.9	8	76	13	65	8	5	1	84	0.84
12477141--12477224	17	5.2	16	80	9	82	7	8	2	82	0.93
12488491--12488539	17	2.9	17	78	9	55	22	2	28	46	1.63
12488483--12488550	16	4.0	18	75	11	63	19	1	30	48	1.58
12489956--12490022	12	5.9	11	70	25	50	8	0	13	77	0.98
12489956--12490022	21	3.0	20	78	18	71	8	0	13	77	0.98
12489949--12490033	7	13.0	7	71	16	58	9	2	14	74	1.17
12489973--12490021	24	2.0	24	84	7	64	12	0	12	75	1.05
12489945--12490028	33	2.6	32	87	5	116	8	2	13	76	1.11
12489962--12490047	45	1.9	45	83	4	111	13	1	11	73	1.16
12495823--12495869	8	6.1	8	85	14	64	74	0	12	12	1.07
12495821--12495869	15	3.3	15	81	18	66	71	0	14	14	1.15
12495823--12495877	17	3.3	17	82	17	71	74	0	12	12	1.07
12496842--12497145	42	7.1	41	80	11	310	25	15	20	38	1.92
12496842--12497145	85	3.6	85	83	7	359	25	15	20	38	1.92
12496856--12497141	129	2.2	127	88	2	428	25	15	19	39	1.91
12497286--12497420	11	10.7	12	72	16	71	22	0	2	74	0.98
12497280--12497458	4	45.8	4	71	18	85	25	1	1	71	1.02
12497278--12497414	15	8.6	16	73	19	101	22	0	2	74	0.97
12497284--12497416	19	6.9	19	72	20	91	22	0	2	74	0.98
12497278--12497431	36	4.5	35	74	16	110	24	1	1	72	1.02
12497308--12497446	19	7.1	19	73	18	74	26	1	1	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12497491--12497535	21	2.2	19	88	11	63	35	4	4	55	1.40
12497503--12497595	41	2.3	42	83	12	106	27	5	4	62	1.36
12497525--12497595	21	3.5	20	75	7	72	25	5	2	66	1.27
12498415--12498551	17	7.8	17	65	19	50	22	3	3	70	1.19
12498417--12498506	16	5.7	15	72	14	67	25	1	4	68	1.15
12498417--12498463	4	11.5	4	78	13	51	25	0	2	72	0.96
12498484--12498536	20	2.5	21	75	24	58	16	7	0	75	1.02
12498492--12498541	12	4.5	11	78	14	50	18	6	0	76	0.99
12498551--12499138	60	9.9	59	83	9	655	45	6	11	36	1.67
12498572--12499138	119	4.8	116	82	9	435	44	7	11	37	1.69
12502878--12502905	14	2.0	14	100	0	56	35	7	0	57	1.26
12502975--12503009	18	2.0	17	94	5	61	45	14	5	34	1.68
12504776--12504852	37	2.1	37	97	0	145	41	15	7	35	1.76
12507442--12507585	52	2.8	52	82	2	164	45	6	20	27	1.74
12507697--12507838	74	1.9	74	86	0	203	27	7	29	35	1.85
12507700--12507865	74	2.2	73	81	4	172	28	6	29	35	1.82
12512093--12512124	15	2.1	16	94	5	57	34	0	0	65	0.93
12512131--12512211	29	2.7	30	78	1	83	39	4	7	48	1.53
12512232--12512283	16	3.2	16	83	0	59	48	3	1	46	1.31
12512198--12512276	22	3.6	21	79	14	72	50	2	1	45	1.23
12512238--12512288	16	3.2	16	88	2	68	47	3	3	45	1.40
12512180--12512278	38	2.6	36	75	16	94	47	4	3	45	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12512534--12512562	2	14.5	2	100	0	58	48	0	0	51	1.00
12514070--12514109	19	2.2	19	86	4	55	57	2	0	40	1.12
12514075--12514120	22	2.0	23	87	4	67	58	0	2	39	1.10
12515321--12515792	218	2.2	218	91	1	761	49	9	8	32	1.66
12515457--12516015	54	10.3	53	70	13	266	49	7	8	34	1.62
12515675--12516059	54	7.1	54	77	7	305	49	7	8	35	1.59
12515680--12516019	107	3.1	106	80	7	346	50	7	7	35	1.57
12518143--12518190	25	1.9	25	83	8	62	25	0	12	62	1.30
12521160--12521285	26	4.9	26	72	20	79	72	0	1	25	0.99
12521184--12521285	18	5.4	18	74	22	86	72	0	0	25	0.97
12521190--12521280	7	13.0	7	78	15	91	71	1	0	27	0.93
12521170--12521273	15	7.2	15	76	15	96	71	0	0	26	0.99
12521210--12521276	22	3.0	22	85	10	91	70	0	0	29	0.88
12521184--12521285	5	20.4	5	67	21	54	72	0	0	25	0.97
12521673--12521712	20	2.0	21	90	9	66	47	27	5	20	1.70
12522067--12522168	3	37.3	3	77	18	107	62	0	2	34	1.10
12522067--12522168	13	7.5	15	82	12	107	62	0	2	34	1.10
12522071--12522175	5	20.6	5	83	8	92	60	0	2	36	1.11
12522424--12522778	55	6.4	55	73	7	250	41	16	19	22	1.90
12522424--12522778	110	3.2	111	77	6	279	41	16	19	22	1.90
12522755--12522802	24	2.0	24	91	0	78	47	14	14	22	1.81
12522708--12522857	79	1.9	79	85	0	210	44	15	18	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12523986--12524037	18	2.8	18	94	2	86	11	13	0	75	1.06
12529416--12529612	3	70.3	3	67	20	106	60	6	1	31	1.30
12529417--12529600	5	36.2	5	71	17	89	59	5	1	33	1.32
12529416--12529590	8	21.5	8	72	17	112	58	5	1	33	1.32
12532027--12532079	22	2.4	22	81	6	54	35	15	13	35	1.86
12534183--12534431	54	4.5	55	76	11	197	49	9	6	34	1.59
12534242--12534431	56	3.4	55	79	11	169	51	7	5	35	1.55
12537562--12537596	16	2.1	16	89	10	52	68	5	2	22	1.24
12539596--12539639	19	2.3	19	96	0	79	29	20	9	40	1.83
12541997--12542029	15	2.1	16	88	5	50	39	3	0	57	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129