genome.fa.s13.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  22  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4375156--4375185	2	15.0	2	100	0	60	50	0	50	0	1.00
4378203--4378251	22	2.3	21	89	3	71	2	22	0	75	0.90
4378300--4378389	44	2.0	44	93	0	153	46	5	4	43	1.47
4378354--4378432	33	2.4	33	84	2	95	36	2	6	54	1.39
4378692--4378730	20	1.9	21	89	5	62	30	0	23	46	1.53
4380333--4380374	22	1.9	22	85	9	59	47	0	0	52	1.00
4387625--4387702	40	1.9	41	92	2	131	24	7	2	65	1.32
4387627--4387714	40	2.3	39	83	15	112	22	5	2	69	1.21
4398412--4398469	26	2.3	26	90	3	91	50	0	1	48	1.11
4398599--4398689	36	2.6	34	73	18	80	41	3	1	53	1.24
4398617--4398655	20	1.9	21	89	5	62	48	0	2	48	1.15
4398792--4398818	11	2.5	11	100	0	54	59	0	0	40	0.98
4398832--4398934	42	2.5	42	78	12	113	47	0	2	48	1.23
4398896--4398949	28	1.9	28	88	0	81	48	0	3	48	1.19
4399115--4399144	14	2.1	15	93	6	53	60	0	0	40	0.97
4399121--4399164	13	3.3	13	84	6	52	47	2	0	50	1.13
4415251--4415285	17	2.1	17	94	0	61	48	8	5	37	1.58
4432349--4432374	7	3.7	7	100	0	52	26	0	15	57	1.38
4436116--4436153	19	2.0	19	89	0	58	26	7	2	63	1.35
4447296--4447321	2	13.0	2	100	0	52	50	0	0	50	1.00
4451409--4451439	2	15.5	2	93	0	53	51	3	45	0	1.17
4456322--4456347	13	2.0	13	100	0	52	23	30	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4457772--4457811	21	1.9	21	84	0	53	42	10	32	15	1.79
4458311--4459250	311	3.0	310	93	3	1585	26	19	16	36	1.93
4459217--4459283	33	2.0	33	100	0	134	35	26	19	17	1.94
4458906--4459568	343	1.9	342	96	1	1240	27	20	16	35	1.94
4467401--4467426	2	13.0	2	100	0	52	0	0	50	50	1.00
4470631--4470703	29	2.5	29	81	2	92	43	2	1	52	1.24
4476070--4476130	25	2.5	23	81	7	68	42	11	3	42	1.57
4476136--4476206	37	1.9	37	82	0	88	43	2	5	47	1.41
4478264--4478301	3	12.7	3	100	0	76	31	0	0	68	0.90
4478721--4478752	2	16.5	2	93	6	57	50	0	0	50	1.00
4478721--4478758	8	4.3	9	87	12	53	50	0	0	50	1.00
4483072--4483121	25	2.0	24	88	7	73	26	10	2	62	1.38
4486361--4486401	15	2.7	15	84	0	64	24	2	9	63	1.37
4488471--4488511	22	1.9	21	85	5	55	12	14	14	58	1.63
4488463--4488511	23	2.2	21	82	7	53	12	12	14	61	1.58
4492655--4492714	26	2.4	25	78	15	63	10	6	10	73	1.25
4497179--4497205	7	3.9	7	100	0	54	85	0	0	14	0.61
4505476--4505505	12	2.4	13	94	5	53	30	36	0	33	1.58
4508068--4508150	29	2.9	29	78	7	87	24	16	9	49	1.76
4511025--4511082	29	2.0	30	82	3	73	34	3	1	60	1.24
4511070--4511115	23	2.0	24	82	4	58	28	0	4	67	1.10
4511951--4511993	20	2.1	21	83	12	54	41	6	4	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4514505--4514536	13	2.3	15	89	10	50	31	0	3	65	1.08
4514574--4514619	14	2.9	16	78	18	51	39	2	8	50	1.46
4514453--4514663	71	3.0	72	82	7	263	36	8	6	48	1.59
4514589--4514723	56	2.4	59	81	13	174	34	9	5	50	1.59
4514702--4514739	15	2.4	16	86	4	51	34	0	2	63	1.09
4515124--4515176	23	2.3	21	81	18	61	1	43	0	54	1.11
4515124--4515179	24	2.4	22	85	8	67	1	42	0	55	1.10
4515640--4515705	22	3.0	22	72	10	64	75	1	1	21	0.96
4515882--4516147	44	6.1	42	77	12	182	44	16	15	24	1.85
4515877--4516147	87	3.1	86	77	6	244	45	16	14	23	1.85
4515927--4516147	44	5.0	45	79	5	202	43	17	15	23	1.86
4516407--4516447	16	2.5	16	88	4	55	36	19	19	24	1.95
4527686--4527860	58	3.1	57	83	10	223	37	9	4	48	1.55
4527879--4528036	62	2.6	63	79	10	193	37	12	5	44	1.66
4528121--4528154	4	8.2	4	87	6	50	47	0	2	50	1.16
4528427--4528462	19	1.9	19	94	5	65	5	44	0	50	1.25
4528953--4529014	22	2.9	21	75	2	70	70	8	1	19	1.20
4532512--4532764	80	3.2	79	88	2	344	42	24	9	23	1.84
4533417--4533689	124	2.2	124	81	5	302	42	8	12	36	1.72
4533430--4533658	62	3.7	60	71	12	169	42	8	11	37	1.71
4545613--4545683	37	1.9	37	97	0	133	35	16	18	29	1.93
4546144--4546179	15	2.5	15	90	4	56	75	2	22	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4548318--4548388	29	2.4	30	85	2	90	32	22	8	36	1.84
4548521--4548655	30	4.5	30	74	13	100	38	5	21	34	1.78
4553805--4553830	9	2.9	9	100	0	52	42	46	11	0	1.40
4558134--4558159	3	8.7	3	100	0	52	34	0	0	65	0.93
4563183--4563213	2	15.5	2	100	0	62	48	0	0	51	1.00
4563211--4563235	4	6.2	4	100	0	50	24	0	0	76	0.80
4570014--4570061	14	3.4	14	78	18	55	31	0	0	68	0.90
4570209--4570423	62	3.5	62	77	9	183	44	3	12	40	1.59
4570599--4570677	35	2.4	34	87	8	117	31	0	5	63	1.16
4570605--4570629	6	4.2	6	100	0	50	16	0	0	84	0.63
4570590--4570677	35	2.7	31	79	11	95	28	0	7	63	1.22
4571906--4571939	18	1.9	17	94	5	59	41	0	0	58	0.98
4572305--4572353	14	3.5	14	83	8	55	57	0	2	40	1.10
4573670--4573713	3	14.7	3	82	0	52	34	59	2	4	1.30
4574124--4574148	2	12.5	2	100	0	50	48	0	0	52	1.00
4582102--4582879	403	1.9	397	81	6	931	29	7	14	49	1.70
4583195--4583227	15	2.1	16	88	5	50	9	3	9	78	1.05
4606968--4606994	1	27.0	1	100	0	54	100	0	0	0	0.00
4607334--4607359	13	2.0	13	100	0	52	23	7	15	53	1.67
4612836--4613029	72	2.7	72	82	0	244	42	8	33	15	1.77
4612969--4613086	57	2.1	57	95	0	209	44	8	34	11	1.72
4612897--4613152	129	2.0	129	86	3	363	44	9	32	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4617920--4617945	2	13.0	2	100	0	52	50	0	0	50	1.00
4618013--4618045	16	2.1	16	94	0	57	54	0	0	45	0.99
4621195--4621238	23	1.9	23	90	0	70	52	0	9	38	1.33
4621270--4621294	13	1.9	13	100	0	50	56	0	0	44	0.99
4628608--4628639	2	16.0	2	100	0	64	50	0	0	50	1.00
4635580--4635738	79	2.0	79	91	2	257	52	20	5	21	1.67
4638832--4638863	16	1.9	17	93	6	57	50	0	3	46	1.17
4638837--4638901	29	2.3	29	84	7	82	64	1	0	33	1.03
4640359--4640394	2	18.0	2	100	0	72	50	0	50	0	1.00
4650916--4650974	3	19.7	3	74	19	52	28	1	0	69	0.98
4650918--4650973	20	2.7	21	81	15	64	30	1	0	67	1.01
4651886--4651939	27	2.0	27	85	0	72	70	5	3	20	1.23
4656463--4656534	36	1.9	36	83	13	92	50	4	0	45	1.21
4656593--4656640	24	2.0	24	87	0	69	31	4	0	64	1.12
4656612--4656645	15	2.2	16	89	5	52	32	5	0	61	1.20
4659959--4659993	2	17.0	2	94	5	61	48	0	2	48	1.16
4667446--4667491	7	6.7	7	76	14	51	80	15	4	0	0.86
4667450--4667491	13	3.2	13	83	10	50	80	14	4	0	0.86
4668600--4668649	15	3.3	15	77	2	55	54	20	0	26	1.45
4674038--4674072	18	1.9	18	88	0	52	31	22	5	40	1.78
4674738--4674969	87	2.7	87	80	4	243	24	18	16	40	1.90
4674396--4674883	196	2.5	196	82	4	599	23	19	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4674862--4675167	109	2.8	111	80	4	350	24	18	16	40	1.90
4674504--4675068	283	2.0	283	81	4	656	24	19	16	40	1.91
4674895--4675190	111	2.7	109	78	7	319	24	17	15	41	1.89
4675262--4675315	21	2.5	21	81	3	72	33	14	12	38	1.85
4675381--4675423	22	2.0	22	95	0	77	25	18	20	34	1.96
4675273--4675838	109	5.2	109	82	3	570	23	18	17	40	1.91
4675708--4675750	22	2.0	22	85	0	59	27	18	18	34	1.95
4675730--4675924	87	2.2	87	84	0	246	24	17	16	41	1.90
4675897--4675946	22	2.2	23	82	3	66	28	20	18	34	1.95
4675660--4676032	196	1.9	196	82	3	464	24	17	17	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129