genome.fa.s13.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  92  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16444048--16444258	111	1.9	112	81	10	261	48	5	6	39	1.53
16444172--16444226	18	2.9	18	81	10	58	45	3	5	45	1.44
16444605--16444638	16	2.1	17	89	10	54	20	20	5	52	1.67
16445192--16445268	30	2.6	29	75	6	82	67	9	0	23	1.19
16445631--16445665	16	2.2	16	89	0	52	45	2	2	48	1.32
16445715--16445759	21	2.2	21	92	4	74	26	2	6	64	1.30
16446881--16446936	27	2.1	27	96	0	103	21	10	21	46	1.81
16448619--16448682	24	2.5	26	80	14	71	56	14	4	25	1.57
16448646--16448682	13	2.8	14	88	12	60	59	10	5	24	1.52
16448726--16448819	20	4.7	19	88	5	125	52	11	5	30	1.60
16448839--16448872	14	2.3	15	90	5	52	52	14	5	26	1.64
16448854--16448889	17	2.1	17	94	0	63	47	13	5	33	1.67
16448949--16449012	18	3.6	17	78	21	69	82	4	0	12	0.81
16448933--16449012	14	5.8	14	75	16	78	81	3	0	15	0.83
16448932--16449012	6	13.0	6	75	19	60	80	3	0	16	0.85
16449654--16449702	11	4.4	11	79	10	55	8	14	22	55	1.65
16449622--16449680	28	2.0	30	83	6	77	13	13	18	54	1.71
16449985--16450060	21	3.8	19	78	16	75	77	5	1	15	1.01
16449985--16450059	13	5.8	12	73	17	53	77	5	1	16	1.02
16449979--16450059	26	3.2	24	80	15	83	76	4	2	16	1.06
16449978--16450061	6	13.0	6	75	16	71	76	4	2	16	1.07
16450007--16450061	14	4.0	14	71	20	53	74	3	1	20	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16450007--16450061	20	2.7	21	81	18	71	74	3	1	20	1.06
16450996--16451061	2	34.0	2	78	14	59	43	1	6	48	1.36
16450994--16451060	13	5.2	13	68	20	50	44	1	5	47	1.36
16455707--16455761	26	2.1	26	83	6	67	34	7	1	56	1.38
16456392--16456457	28	2.4	28	80	12	75	62	0	3	34	1.11
16456809--16456884	29	2.6	29	83	6	91	52	3	6	36	1.46
16457555--16457597	20	2.2	20	91	0	68	44	13	13	27	1.83
16457631--16457755	60	2.1	61	87	3	182	44	5	7	42	1.55
16458837--16458864	14	2.0	14	100	0	56	50	0	14	35	1.43
16460750--16460791	19	2.2	20	86	4	59	45	11	0	42	1.41
16460873--16460902	13	2.2	14	94	5	53	46	0	0	53	1.00
16469030--16469080	24	2.1	25	82	10	61	43	3	1	50	1.31
16469055--16469102	18	2.7	17	78	15	53	43	6	2	47	1.40
16469284--16469344	30	2.0	30	100	0	122	19	36	16	27	1.93
16480381--16480640	144	1.8	144	80	9	316	32	10	15	41	1.80
16489668--16489713	24	1.9	24	86	0	65	45	28	0	26	1.54
16489711--16489876	7	24.6	7	69	21	70	42	29	2	25	1.68
16489717--16489848	13	9.8	13	69	16	58	42	28	1	27	1.64
16489711--16489874	20	7.8	20	66	23	70	42	29	2	26	1.68
16489732--16489854	47	2.6	45	75	16	115	41	29	2	26	1.69
16490948--16491002	25	2.2	25	93	0	92	30	5	5	58	1.44
16491518--16491555	9	4.3	9	83	3	51	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16491517--16491550	18	1.9	17	94	5	59	70	0	0	29	0.87
16496562--16496810	128	2.0	127	82	2	302	51	9	23	16	1.73
16498173--16498216	22	1.9	24	86	9	65	22	15	11	50	1.76
16501671--16501709	20	2.0	20	100	0	78	51	10	25	12	1.71
16502372--16502493	55	2.2	55	79	4	138	53	1	23	21	1.55
16502951--16503042	47	2.0	47	82	8	116	31	10	14	43	1.79
16503055--16503455	49	7.8	50	73	11	249	27	13	14	44	1.82
16503050--16503316	106	2.6	106	73	9	253	27	11	15	45	1.81
16503263--16503459	105	1.9	103	84	6	254	29	15	13	41	1.85
16504359--16504495	61	2.2	61	91	5	215	32	10	12	44	1.76
16505265--16505399	63	2.1	63	83	5	175	37	12	11	38	1.80
16506726--16506750	11	2.3	11	100	0	50	8	8	16	68	1.38
16508007--16508121	7	17.3	7	69	13	64	41	33	1	22	1.64
16508006--16508044	20	1.9	20	84	5	51	46	35	0	17	1.49
16507986--16508052	27	2.4	27	82	7	73	44	31	0	23	1.54
16508035--16508147	7	17.3	6	75	16	57	39	32	2	24	1.69
16508007--16508147	13	10.8	13	76	10	83	41	33	2	23	1.66
16514940--16515215	63	4.7	57	74	14	206	35	8	5	50	1.56
16514933--16515123	58	3.1	65	78	15	217	32	7	4	54	1.50
16515098--16515125	12	2.3	12	100	0	56	39	0	0	60	0.97
16514932--16515183	121	2.1	121	81	9	284	34	7	5	52	1.53
16516555--16516583	12	2.3	13	94	5	51	68	6	0	24	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16519065--16519115	5	10.0	5	79	12	59	76	0	23	0	0.79
16519065--16519108	17	2.7	17	89	6	65	75	0	25	0	0.81
16519124--16519183	3	19.3	3	77	13	59	60	3	1	35	1.23
16519506--16519981	197	2.4	197	83	1	569	34	13	25	26	1.93
16536673--16536699	11	2.5	11	100	0	54	92	0	7	0	0.38
16537781--16538267	43	11.5	43	75	8	399	25	12	17	45	1.83
16537781--16538267	88	5.7	86	78	8	406	25	12	17	45	1.83
16538469--16538511	15	2.9	14	78	21	52	74	2	11	11	1.17
16538793--16538865	32	2.3	31	75	9	76	26	4	13	56	1.55
16539438--16539488	25	2.0	25	82	14	61	41	5	9	43	1.62
16539647--16539700	27	2.0	28	85	7	76	42	9	12	35	1.75
16539949--16540043	49	1.9	49	87	6	138	54	8	13	23	1.66
16542370--16542447	23	3.3	23	91	3	129	29	10	7	52	1.63
16542359--16542447	47	1.9	47	90	4	146	29	10	8	51	1.66
16542459--16542503	23	2.0	23	91	4	74	26	4	8	60	1.46
16542519--16542570	20	2.5	22	87	9	74	30	7	13	48	1.71
16542625--16542674	19	2.5	20	81	15	59	28	6	8	58	1.51
16545775--16545814	21	2.0	20	85	5	53	52	2	25	20	1.59
16547986--16548190	100	2.0	100	97	0	383	37	7	20	34	1.81
16550359--16550465	42	2.5	43	77	4	119	30	13	14	42	1.83
16550504--16550549	23	2.0	23	91	0	74	21	13	30	34	1.91
16551573--16551613	19	2.1	20	86	4	57	29	7	7	56	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16551579--16551772	55	3.5	55	86	0	273	27	6	11	55	1.59
16551719--16551764	22	2.0	23	91	4	76	23	6	10	58	1.55
16551692--16551778	20	4.6	20	70	13	76	28	6	10	54	1.60
16551757--16551822	28	2.6	24	71	17	60	31	1	9	57	1.39
16551771--16551835	28	2.3	28	81	5	78	30	0	9	60	1.28
16551838--16551884	24	1.9	25	86	4	69	27	4	17	51	1.64
16552613--16552662	26	2.0	25	88	4	73	28	0	0	72	0.86
16552652--16552707	21	2.7	21	86	10	71	50	1	0	48	1.11
16553139--16553633	259	1.9	258	85	3	674	41	21	6	30	1.79
16559631--16559678	22	2.2	22	88	0	69	16	0	27	56	1.41
16559653--16559686	15	2.3	15	94	0	59	14	0	26	58	1.36
16559720--16559753	15	2.3	15	94	0	59	11	8	32	47	1.71
16559868--16559935	15	4.5	15	68	14	50	22	1	32	44	1.62
16560046--16560109	25	2.4	25	79	20	69	31	0	3	65	1.08
16560044--16560109	26	2.5	26	75	24	75	31	0	3	65	1.08
16560781--16560811	15	2.1	15	93	0	53	12	0	3	83	0.75
16565867--16565952	45	1.9	45	81	9	104	55	10	6	26	1.59
16569814--16569873	22	2.7	22	77	10	68	31	21	28	18	1.97
16570696--16570738	11	3.8	11	82	17	61	72	0	0	27	0.85
16571558--16571582	6	4.2	6	100	0	50	32	0	36	32	1.58
16571586--16571612	6	4.5	6	100	0	54	48	0	33	18	1.49
16575574--16575690	59	2.0	59	98	0	225	30	15	16	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16588318--16588383	32	2.1	32	85	0	87	30	24	13	31	1.94
16591934--16591985	19	2.7	19	93	0	86	25	28	13	32	1.93
16592383--16592781	199	2.0	199	96	0	737	30	14	18	37	1.90
16593226--16593273	21	2.3	20	79	6	60	18	22	10	47	1.79
16601052--16601362	171	1.8	172	81	6	398	38	14	10	36	1.80
16601223--16601456	124	1.9	124	82	6	296	38	14	8	38	1.77
16601269--16601459	62	3.1	58	70	17	136	37	14	9	38	1.80
16602354--16602600	80	3.1	79	86	1	334	22	8	25	43	1.81
16602589--16602643	25	2.2	25	83	6	67	20	7	34	38	1.80
16607064--16607094	2	15.5	2	93	0	53	48	3	0	48	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129