genome.fa.s13.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  58  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11321687--11321830	64	2.3	61	77	7	137	34	13	15	37	1.86
11322302--11322574	63	4.3	63	71	14	202	34	13	9	42	1.76
11322581--11322758	64	2.8	62	76	13	159	38	15	9	36	1.80
11323028--11323294	128	2.1	125	84	8	344	41	12	11	33	1.79
11322937--11323341	191	2.1	188	79	10	443	40	12	11	35	1.79
11323044--11323340	126	2.3	125	82	9	352	42	12	9	35	1.76
11322937--11323357	63	6.7	64	71	15	254	40	12	11	35	1.80
11331639--11331800	63	2.5	66	81	7	179	38	9	9	42	1.70
11335830--11335959	63	2.1	62	85	4	181	40	13	10	35	1.79
11345064--11345380	153	2.1	155	87	5	466	27	19	11	41	1.85
11348552--11348596	22	2.0	22	100	0	90	26	13	13	46	1.80
11356856--11356912	29	2.0	29	83	13	73	49	1	15	33	1.55
11357319--11357378	27	2.2	27	84	0	75	3	18	0	78	0.89
11359530--11359928	58	6.9	58	87	5	553	38	11	5	44	1.64
11359532--11359912	113	3.3	114	88	4	563	38	12	5	44	1.65
11359530--11359928	173	2.3	171	90	4	624	38	11	5	44	1.64
11359811--11359897	27	3.2	27	62	26	65	36	10	5	47	1.62
11359999--11360066	15	4.3	15	75	15	57	80	5	2	10	0.98
11359995--11360051	27	2.1	27	83	6	71	82	5	1	10	0.90
11359977--11360050	22	3.4	22	74	20	75	79	8	1	10	0.99
11359995--11360051	11	5.3	11	80	14	50	82	5	1	10	0.90
11360011--11360054	16	2.7	16	85	3	61	84	2	2	11	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11361558--11361703	59	2.5	59	84	3	188	45	21	14	19	1.85
11361652--11361869	45	5.0	44	78	4	190	45	17	15	21	1.85
11361659--11361856	89	2.2	89	85	1	254	46	16	16	21	1.84
11361748--11362070	41	7.7	41	75	9	233	43	19	14	22	1.87
11361884--11362070	83	2.2	84	85	5	247	43	19	13	23	1.86
11362365--11362446	43	1.9	42	90	2	128	35	15	10	37	1.83
11362630--11362670	22	1.9	21	95	5	73	34	14	9	41	1.79
11362756--11362805	20	2.5	20	100	0	100	32	20	16	32	1.94
11363827--11363911	16	5.1	16	72	25	61	7	10	0	82	0.84
11363829--11363875	15	3.1	14	82	11	58	6	6	0	87	0.68
11363832--11363911	12	6.6	12	77	7	63	6	11	0	82	0.83
11363829--11363899	24	3.0	24	89	4	99	7	9	0	83	0.82
11363845--11363911	12	5.4	12	77	7	71	4	13	0	82	0.82
11363838--11363913	24	3.3	24	87	7	97	6	13	0	80	0.90
11363829--11363889	14	4.3	14	81	4	68	6	8	0	85	0.75
11363845--11363921	24	3.1	23	78	10	64	6	15	0	77	0.95
11367943--11368573	58	10.9	57	87	7	839	37	12	6	43	1.69
11368217--11368308	29	3.2	30	61	25	70	38	10	6	44	1.65
11367944--11368573	287	2.2	286	90	5	968	37	12	6	43	1.68
11368620--11368679	9	6.8	9	77	9	61	83	3	1	11	0.84
11368619--11368678	25	2.3	25	85	5	75	81	3	1	13	0.89
11369925--11369989	23	2.9	22	77	6	67	69	4	4	21	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11377996--11378036	22	1.9	22	90	5	66	36	0	2	60	1.10
11378083--11378143	29	2.0	29	84	6	77	18	4	4	72	1.21
11380321--11380358	15	2.5	15	87	8	51	34	0	2	63	1.09
11381873--11381911	2	20.0	2	84	5	53	48	0	0	51	1.00
11383352--11383406	25	2.2	24	84	9	67	45	3	0	50	1.19
11390032--11390193	9	18.2	8	70	20	76	56	2	4	36	1.34
11390315--11390363	20	2.6	18	78	9	62	59	2	2	36	1.21
11390315--11390364	19	2.6	20	76	17	61	58	2	2	38	1.21
11390301--11390479	9	20.3	9	66	16	65	62	2	2	32	1.22
11390514--11390559	19	2.4	19	88	0	74	39	2	0	58	1.10
11390630--11390697	10	6.9	10	68	8	50	41	1	7	50	1.39
11390633--11390671	20	2.0	20	89	0	60	43	0	7	48	1.31
11390642--11390783	19	7.4	18	69	12	79	39	1	5	53	1.33
11390652--11390730	28	2.8	29	70	18	76	36	2	7	53	1.43
11395265--11395307	20	2.0	21	83	16	54	44	0	2	53	1.13
11397390--11397689	150	2.0	150	98	0	582	41	11	31	15	1.82
11397782--11397839	27	2.1	27	93	0	98	55	3	10	31	1.50
11397782--11397847	27	2.5	27	87	4	82	54	4	9	31	1.52
11397944--11398012	28	2.6	26	84	13	95	49	2	13	34	1.56
11400520--11400622	6	17.0	6	73	2	71	32	4	5	57	1.44
11400557--11400622	25	2.7	23	78	15	62	30	7	4	57	1.47
11406331--11406363	15	2.1	16	88	5	50	30	6	3	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11408849--11409225	144	2.6	145	79	2	364	32	13	11	42	1.80
11415907--11415956	22	2.3	22	79	3	57	42	10	16	32	1.81
11417043--11417110	21	3.2	21	66	15	59	26	35	14	23	1.94
11417029--11417110	42	2.0	42	87	2	121	28	31	17	23	1.96
11419884--11419933	25	2.1	25	85	7	68	64	0	0	36	0.94
11419856--11419899	3	14.7	3	90	0	52	63	6	0	29	1.20
11419881--11419933	26	2.0	26	82	7	63	64	0	0	35	0.94
11421390--11421415	13	2.0	13	100	0	52	46	30	0	23	1.53
11426983--11427027	20	2.2	20	96	0	81	31	22	17	28	1.97
11439031--11439269	36	6.4	36	78	9	221	17	21	13	48	1.81
11439022--11439314	74	3.9	74	86	2	374	17	22	12	47	1.81
11439031--11439304	148	1.8	149	88	1	424	17	22	13	47	1.81
11439372--11439461	34	2.5	35	83	7	101	20	20	10	50	1.76
11439500--11439737	69	3.5	69	73	6	250	19	17	15	47	1.82
11439408--11439666	68	3.8	68	70	7	186	20	19	14	45	1.85
11439437--11439735	137	2.2	136	89	3	440	21	18	14	45	1.85
11440080--11440114	3	11.7	3	93	0	61	62	0	2	34	1.10
11440102--11440154	25	2.1	25	85	3	70	64	0	0	35	0.94
11440099--11440158	26	2.2	26	80	14	59	65	0	0	35	0.93
11453210--11453398	39	5.0	39	74	11	160	18	19	13	48	1.80
11453227--11453398	75	2.3	74	93	2	290	17	19	13	50	1.78
11453272--11453390	36	3.2	36	71	14	116	17	17	13	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11453675--11453762	34	2.6	34	83	0	122	15	23	14	45	1.84
11455631--11455666	13	2.8	13	91	0	54	44	30	0	25	1.54
11459799--11459856	18	3.1	18	74	18	55	79	10	1	8	1.01
11460349--11460383	16	2.1	17	89	5	54	77	5	14	2	1.07
11461838--11461982	79	1.8	78	82	1	182	40	15	14	30	1.87
11461980--11462209	124	1.9	124	89	0	361	35	20	11	31	1.89
11462178--11462304	41	3.1	41	84	0	146	36	22	11	30	1.89
11462219--11462430	106	2.0	106	98	0	406	33	21	13	31	1.92
11462559--11462606	18	2.7	18	80	0	69	25	18	14	41	1.88
11462855--11462893	18	2.2	17	90	4	60	69	5	2	23	1.21
11463911--11463949	19	2.0	20	85	5	53	41	2	0	56	1.13
11468438--11468475	17	2.3	17	86	4	51	23	2	0	73	0.95
11468444--11468510	23	2.9	24	82	10	77	25	1	1	71	1.03
11468439--11468510	24	3.0	25	80	13	80	25	1	1	72	1.01
11471325--11471391	24	2.8	24	88	0	98	46	11	7	34	1.69
11471560--11471598	20	2.0	20	85	10	53	38	20	5	35	1.75
11475771--11475885	37	3.1	36	74	16	94	52	0	0	46	1.06
11476356--11476390	16	2.2	16	94	0	61	62	0	2	34	1.10
11480443--11480578	49	2.7	50	82	4	159	42	16	12	28	1.84
11480657--11480935	100	2.8	97	80	7	330	40	19	15	25	1.90
11480966--11481180	98	2.2	99	86	3	292	41	17	15	25	1.88
11481123--11481329	40	5.1	41	73	5	197	42	20	12	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11481120--11481329	82	2.6	79	87	5	307	42	20	11	25	1.86
11481706--11481864	35	4.5	35	86	2	210	35	15	15	33	1.89
11487779--11488012	118	2.0	116	96	1	432	42	8	6	43	1.60
11488423--11488466	21	2.2	20	83	4	52	68	2	2	27	1.14
11488423--11488485	30	2.1	30	82	5	74	69	3	1	25	1.12
11489354--11489387	17	1.9	18	94	5	61	85	0	14	0	0.60
11492705--11492829	55	2.3	54	85	8	164	35	10	7	47	1.65
11492828--11492949	64	1.9	63	93	1	208	32	9	5	51	1.59
11492894--11492981	46	1.9	45	86	2	122	31	11	9	47	1.71
11493019--11493057	17	2.3	16	87	12	60	66	10	0	23	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129