genome.fa.s13.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  102  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18615852--18615909	21	2.6	22	78	8	64	43	12	12	32	1.79
18618076--18618112	19	1.9	19	89	10	58	59	5	5	29	1.42
18622880--18623198	54	5.9	54	74	10	258	31	8	6	53	1.57
18623170--18623233	33	1.9	34	87	3	94	35	14	4	45	1.65
18624053--18624099	6	8.0	6	78	4	51	78	2	4	14	0.99
18625299--18625355	28	2.0	28	90	6	89	24	7	22	45	1.77
18633076--18633122	25	1.9	24	82	4	58	34	2	2	61	1.20
18633651--18633880	16	14.7	15	80	7	201	21	0	28	48	1.56
18633651--18633880	31	7.4	30	80	9	228	21	0	28	48	1.56
18633634--18633863	78	3.0	78	89	1	340	22	0	28	47	1.57
18633804--18633867	23	2.8	23	72	9	67	21	3	28	46	1.66
18634303--18634347	21	2.0	21	87	12	63	75	4	0	20	0.97
18635224--18635256	11	3.1	11	86	8	50	12	9	51	27	1.69
18635222--18635256	10	3.4	10	88	7	52	14	8	48	28	1.73
18635386--18635433	3	16.0	3	77	0	51	41	2	0	56	1.11
18635386--18635433	21	2.3	21	88	0	69	41	2	0	56	1.11
18635367--18635431	15	4.2	16	75	14	66	41	1	0	56	1.08
18635578--18635747	88	1.9	88	89	0	259	40	16	18	24	1.91
18635644--18635857	110	1.9	110	83	3	270	37	18	20	23	1.94
18635754--18635945	86	2.2	88	87	3	282	39	17	20	23	1.92
18635596--18636053	196	2.3	198	85	3	602	39	18	18	23	1.92
18635842--18636082	110	2.2	109	87	1	340	37	19	19	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18636038--18636102	23	2.9	22	84	4	94	30	21	24	23	1.99
18636038--18636102	22	2.9	22	84	8	87	30	21	24	23	1.99
18635936--18636370	133	3.3	133	83	5	524	38	19	18	23	1.93
18636171--18636239	23	3.0	23	85	6	88	28	23	23	24	1.99
18636307--18636382	22	3.4	22	80	7	82	30	18	23	27	1.98
18636322--18636392	23	3.1	23	80	8	92	32	18	22	26	1.97
18636190--18636527	176	1.9	178	80	2	403	37	16	19	26	1.93
18636088--18636652	309	1.8	309	80	3	672	38	16	20	25	1.93
18636515--18636986	110	4.3	109	80	4	459	38	15	20	26	1.92
18636717--18636759	22	2.0	22	85	0	59	34	13	18	32	1.90
18636495--18636986	220	2.2	219	80	6	546	37	14	21	26	1.92
18636936--18636990	22	2.5	22	81	3	56	30	12	23	32	1.92
18636832--18637118	132	2.2	134	84	4	368	36	17	21	24	1.94
18636972--18637227	110	2.3	110	84	5	288	40	18	18	22	1.92
18637177--18637244	23	3.0	23	78	8	68	35	19	17	27	1.94
18637178--18637244	22	3.0	22	80	2	71	35	19	17	26	1.94
18636716--18637244	242	2.2	243	80	3	593	37	16	20	25	1.93
18637517--18637603	41	2.1	41	85	4	113	28	13	21	35	1.92
18637526--18637621	41	2.3	41	89	3	140	32	11	19	36	1.88
18639921--18639964	9	4.8	9	88	5	70	9	2	0	88	0.59
18639910--18639965	21	2.8	20	86	7	71	8	5	0	85	0.73
18645956--18645986	16	1.9	16	93	0	53	19	0	35	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18645980--18646008	15	2.0	15	93	6	51	6	0	44	48	1.29
18646024--18646161	16	8.8	16	77	6	122	21	0	29	48	1.55
18645942--18646042	51	2.0	51	82	7	125	16	0	33	48	1.53
18646000--18646164	16	10.7	15	73	13	104	21	1	30	46	1.59
18646000--18646164	31	5.3	30	74	11	104	21	1	30	46	1.59
18646036--18646164	47	2.7	47	78	2	125	22	0	30	46	1.57
18646943--18646967	12	2.1	12	100	0	50	60	0	40	0	0.97
18647618--18647658	8	5.1	8	93	0	64	4	0	7	87	0.65
18647671--18647732	3	20.7	3	75	6	54	38	1	0	59	1.07
18647664--18647732	18	3.6	18	79	13	68	40	1	0	57	1.07
18648002--18648286	101	2.7	107	80	9	325	31	9	4	55	1.52
18647987--18648428	54	8.2	54	73	12	241	32	7	5	53	1.53
18648002--18648281	53	5.3	53	76	12	227	31	8	4	55	1.50
18648737--18648781	19	2.4	19	92	0	72	20	13	31	35	1.91
18658941--18658993	23	2.3	23	78	15	58	50	0	1	47	1.12
18659303--18659330	2	14.0	2	100	0	56	50	0	0	50	1.00
18667210--18667256	24	2.0	24	83	8	60	6	21	0	72	1.07
18671059--18671118	28	2.1	28	84	0	75	65	1	0	33	1.03
18671492--18671560	24	2.9	24	83	10	72	46	4	10	39	1.58
18673630--18673666	16	2.2	17	90	4	58	54	0	0	45	1.00
18674389--18674597	75	2.8	75	81	6	237	52	3	8	35	1.49
18683468--18683629	59	2.7	62	85	3	224	34	12	6	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18683626--18683658	14	2.3	15	89	5	50	33	0	3	63	1.10
18683520--18683780	130	2.0	132	86	4	368	37	9	4	48	1.58
18683641--18683896	59	4.3	59	82	5	302	39	7	3	49	1.49
18683469--18683873	189	2.2	191	81	9	484	38	9	4	47	1.58
18684610--18684663	25	2.2	26	83	9	69	7	18	3	70	1.26
18684611--18684664	26	2.1	26	89	6	83	7	16	3	72	1.22
18685254--18685481	44	5.1	44	82	4	287	47	18	11	22	1.80
18685254--18685483	90	2.6	90	83	4	304	48	18	11	22	1.79
18685830--18686198	114	3.2	114	94	0	623	36	14	14	34	1.87
18686197--18686245	21	2.4	21	89	3	73	38	12	10	38	1.77
18686197--18686394	79	2.5	79	90	0	299	33	16	11	37	1.85
18687505--18687635	10	12.5	10	70	15	77	6	16	0	77	0.95
18687532--18687611	34	2.4	33	81	10	90	5	17	0	77	0.94
18687510--18687613	55	1.9	52	86	5	145	5	16	0	77	0.95
18687510--18687630	55	2.2	56	82	11	144	6	16	0	76	0.98
18691938--18691989	14	3.6	14	79	5	68	19	3	28	48	1.66
18691911--18691964	22	2.5	21	85	11	65	18	3	24	53	1.60
18691934--18691996	14	4.4	14	76	4	63	19	4	28	47	1.69
18691941--18692082	29	4.8	30	78	10	132	18	2	32	46	1.63
18692000--18692024	13	1.9	13	100	0	50	16	0	32	52	1.44
18692115--18692157	22	2.0	22	85	0	59	32	16	20	30	1.95
18692191--18692297	37	2.9	37	83	1	108	51	11	16	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18692202--18692310	37	3.0	36	83	4	128	49	14	18	17	1.80
18692463--18692514	22	2.4	22	87	6	70	26	13	26	32	1.94
18692253--18692602	132	2.7	132	80	2	373	39	15	20	24	1.92
18692972--18693077	41	2.6	41	84	0	140	35	12	19	32	1.89
18693245--18693386	66	2.2	66	83	5	173	35	13	17	33	1.89
18693244--18693379	33	4.2	33	71	5	107	36	12	18	33	1.88
18693263--18693422	66	2.4	65	81	6	180	35	11	18	33	1.88
18693364--18693442	31	2.5	33	83	6	99	36	12	17	32	1.88
18693326--18693529	33	6.4	33	71	10	93	36	12	18	32	1.88
18693848--18693899	22	2.4	22	90	0	86	23	13	32	30	1.93
18694783--18694843	28	2.2	27	85	11	79	8	14	0	77	0.99
18697652--18697722	4	17.8	4	72	5	54	45	5	25	23	1.75
18697652--18697722	24	3.0	24	79	4	72	45	5	25	23	1.75
18697652--18697709	16	3.6	16	78	0	62	46	5	24	24	1.72
18701762--18701952	61	3.3	58	80	7	203	35	9	5	49	1.59
18701762--18701932	59	2.8	61	83	5	206	33	10	5	50	1.59
18701823--18702081	132	2.0	133	83	5	339	37	9	4	48	1.55
18701992--18702028	15	2.4	16	82	17	51	51	5	0	43	1.24
18701945--18702081	61	2.3	59	83	5	168	40	8	2	48	1.48
18702290--18702319	11	2.8	11	95	5	53	40	30	20	10	1.85
18702445--18702490	21	2.2	21	84	3	58	0	47	0	52	1.00
18706231--18706274	12	3.8	12	81	3	54	54	4	2	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18706310--18706376	12	5.7	12	76	16	61	32	0	0	67	0.91
18706305--18706377	26	2.8	26	74	15	71	32	0	0	67	0.91
18706316--18706377	16	3.7	16	83	10	79	33	0	0	66	0.92
18706358--18706401	23	1.9	23	85	0	61	43	0	0	56	0.99
18708522--18708574	27	2.0	27	85	7	72	39	1	5	52	1.36
18710211--18710273	32	2.0	32	83	0	81	39	15	4	39	1.69
18710343--18710474	59	2.2	60	81	9	155	29	18	11	40	1.85
18710784--18711425	325	2.0	325	85	1	885	42	9	8	39	1.68
18724935--18725006	29	2.6	27	75	14	74	45	1	0	52	1.09
18726533--18726574	16	2.5	17	88	3	59	40	14	14	30	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129