genome.fa.s13.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  9  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090040--1090993	530	1.8	526	81	4	1184	38	7	11	42	1.69
1092332--1092469	67	2.1	67	84	2	179	43	7	11	36	1.70
1091821--1092994	606	1.9	605	79	6	1317	40	7	10	41	1.67
1092429--1095395	181	16.4	181	76	8	2178	39	8	10	41	1.70
1092429--1126668	362	94.9	359	68	14	6177	39	8	10	41	1.69
1095402--1099830	181	24.7	180	75	7	3160	39	8	10	41	1.70
1100005--1101540	177	8.6	176	74	8	962	39	8	10	42	1.68
1101553--1104160	181	14.6	179	76	6	1918	40	8	9	40	1.69
1101694--1107145	538	10.3	532	74	10	2755	40	8	9	41	1.69
1104274--1107145	357	8.1	355	71	11	1165	39	8	9	42	1.68
1104274--1105424	178	6.4	180	75	7	948	40	8	8	41	1.68
1105650--1107245	181	8.9	179	75	7	1120	39	8	10	41	1.70
1105681--1107142	359	4.1	359	76	7	897	39	8	10	42	1.69
1106628--1107890	645	1.9	644	79	6	1407	38	8	11	41	1.71
1107676--1108142	176	2.6	176	77	6	447	37	9	9	43	1.70
1107536--1108337	181	4.5	175	76	8	575	38	9	9	43	1.69
1108059--1108649	315	1.9	314	80	6	694	38	8	7	44	1.65
1108390--1116578	181	45.7	180	73	9	4443	40	8	10	41	1.68
1111539--1111604	34	1.9	34	93	0	114	45	3	10	40	1.54
1111551--1111611	18	3.5	18	69	24	58	44	4	8	42	1.55
1115442--1115866	186	2.3	182	79	6	434	39	9	10	40	1.72
1113851--1116474	363	7.3	356	74	9	1315	39	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115935--1116240	169	1.8	169	87	2	454	39	6	9	44	1.64
1116669--1117440	180	4.3	179	75	7	485	41	8	9	40	1.67
1117466--1126668	181	51.3	180	70	13	2457	40	8	9	41	1.68
1117880--1118190	164	1.9	165	82	3	394	38	8	11	42	1.70
1118674--1126646	181	44.3	180	70	12	3144	40	8	9	41	1.68
1117457--1126668	898	10.3	889	73	10	4567	40	8	9	41	1.68
1123529--1123561	18	1.9	17	88	11	50	48	3	9	39	1.50
1108364--1131991	717	33.1	707	70	13	4738	40	8	9	41	1.68
1126385--1126989	321	1.9	321	80	2	712	39	9	8	42	1.66
1127672--1132068	181	24.7	182	73	10	884	40	7	9	42	1.67
1126701--1131991	711	7.4	710	74	9	3147	40	7	9	42	1.67
1129351--1129398	18	2.7	19	76	23	52	41	8	10	39	1.69
1128168--1132071	181	21.9	179	74	9	2422	40	7	9	42	1.67
1126701--1132071	360	15.1	357	74	9	3238	40	7	9	42	1.67
1132681--1132715	10	3.5	10	88	0	52	8	28	8	54	1.60
1133783--1134180	177	2.2	180	82	3	464	40	6	9	42	1.63
1134254--1135982	355	4.8	356	76	10	923	40	8	10	41	1.68
1134258--1136346	180	11.7	181	77	7	1492	40	8	10	41	1.69
1134258--1136403	181	12.0	179	76	8	1435	40	8	10	41	1.69
1136425--1139896	180	19.4	180	76	8	2527	40	8	9	41	1.67
1136429--1139896	357	9.7	356	75	10	2251	40	8	9	41	1.67
1140440--1140481	18	2.6	16	81	11	50	26	2	0	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140945--1141033	35	2.5	35	83	5	99	52	22	13	11	1.71
1141056--1141215	36	4.4	36	72	10	130	50	17	17	14	1.78
1140982--1141179	73	2.7	73	78	3	204	49	18	16	15	1.80
1141124--1141214	35	2.6	35	78	1	101	51	18	16	13	1.76
1141251--1141428	65	2.7	64	78	6	196	33	14	19	33	1.91
1141251--1142360	33	33.2	33	72	11	325	29	16	19	35	1.93
1141849--1142207	100	3.6	100	77	9	256	30	17	16	35	1.92
1141414--1142358	35	28.1	34	71	12	350	29	16	19	35	1.93
1145011--1145052	21	2.0	21	90	4	66	52	0	11	35	1.38
1149993--1150037	4	11.0	4	81	13	56	71	4	2	22	1.15
1153321--1153425	5	20.2	5	75	16	65	71	0	8	19	1.17
1153356--1153425	6	11.8	6	76	14	56	72	0	8	18	1.09
1153356--1153425	17	3.9	17	80	10	61	72	0	8	18	1.09
1153352--1153425	11	6.8	11	76	18	66	72	0	9	17	1.09
1154836--1154868	15	2.2	15	100	0	66	18	0	39	42	1.50
1157372--1157471	47	2.1	47	96	0	182	25	22	15	38	1.92
1160623--1160665	16	2.6	17	81	7	52	13	6	23	55	1.62
1160900--1160947	17	2.6	18	81	15	62	8	2	31	58	1.39
1160900--1160951	10	5.6	10	84	13	67	7	1	30	59	1.36
1161268--1161304	17	2.2	17	90	0	56	10	0	16	72	1.10
1169283--1169315	5	7.0	5	86	13	52	81	0	18	0	0.68
1170806--1170837	16	2.1	16	88	11	50	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170804--1170840	14	2.6	15	83	12	51	43	0	0	56	0.99
1171857--1171930	32	2.3	32	88	0	112	41	2	0	55	1.14
1172285--1172347	3	21.3	3	81	3	65	23	4	0	71	1.05
1172285--1172338	15	3.7	15	87	2	74	22	3	0	74	0.98
1173143--1173185	19	2.3	19	88	8	61	11	4	2	81	0.93
1173150--1173224	7	10.7	7	74	18	59	21	2	2	73	1.08
1173190--1173246	22	2.6	22	89	10	82	26	0	5	68	1.11
1174533--1174572	17	2.4	17	95	0	71	35	17	25	22	1.95
1177870--1178209	145	2.4	145	86	4	447	32	13	12	42	1.81
1188111--1188324	33	6.5	32	77	10	200	38	18	14	28	1.90
1188051--1188235	98	1.9	98	88	6	286	37	20	13	28	1.90
1188114--1188361	66	3.7	67	79	8	240	37	19	14	28	1.92
1188054--1188332	33	8.4	32	74	10	172	38	19	13	28	1.90
1188389--1188486	43	2.3	43	80	3	110	29	20	13	36	1.91
1188623--1188667	18	2.5	18	88	0	72	22	20	15	42	1.89
1188899--1189189	22	13.2	22	73	5	194	34	19	22	23	1.96
1188899--1189151	44	5.8	44	76	0	238	33	20	22	23	1.97
1188899--1189151	88	2.9	88	84	1	310	33	20	22	23	1.97
1189209--1189480	36	7.5	36	69	8	140	18	14	12	54	1.71
1190122--1190311	67	2.8	67	77	6	190	21	22	6	50	1.72
1190149--1190702	134	4.2	129	75	7	418	20	23	8	47	1.78
1190149--1190324	34	5.2	33	68	19	96	21	23	7	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190149--1190579	67	6.5	67	77	5	347	20	23	8	47	1.77
1190216--1190449	34	7.1	34	70	13	110	20	22	8	48	1.76
1190216--1190709	131	3.7	131	77	6	451	21	24	8	46	1.78
1190478--1190709	34	6.9	34	67	14	106	22	25	7	44	1.79
1190216--1190709	266	1.9	264	85	4	681	21	24	8	46	1.78
1190691--1190768	34	2.3	34	82	4	86	17	19	10	52	1.73
1191299--1191614	146	2.2	144	82	3	391	35	13	11	39	1.80
1191299--1191713	145	2.9	144	82	4	444	34	13	11	40	1.80
1196333--1196367	3	12.0	3	93	6	63	68	0	0	31	0.90
1196393--1196434	10	4.3	10	78	6	50	83	2	14	0	0.75
1196394--1196434	19	2.2	19	86	8	57	82	2	14	0	0.76
1197088--1197113	11	2.4	11	100	0	52	92	0	7	0	0.39
1197789--1197826	19	2.0	20	89	5	60	65	0	5	28	1.14
1197913--1197958	3	15.3	3	100	0	92	67	0	0	32	0.91
1198115--1198171	30	1.9	30	85	0	78	52	19	0	28	1.46
1198219--1198271	21	2.5	20	77	14	54	50	24	0	24	1.49
1198191--1198460	30	9.1	30	75	8	191	45	33	1	19	1.58
1198370--1198422	14	3.6	14	76	14	61	43	33	0	22	1.54
1198365--1198460	31	3.2	31	92	2	151	43	35	1	19	1.58
1198468--1198497	15	2.1	14	93	6	51	53	36	0	10	1.35
1198694--1198726	17	1.9	17	88	11	50	66	0	6	27	1.15
1199656--1199685	15	2.0	15	93	0	51	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201893--1201969	4	19.2	4	80	5	84	24	23	2	49	1.63
1203598--1203628	11	2.8	11	95	0	53	87	0	9	3	0.66
1205813--1205907	22	4.3	21	76	10	66	36	25	17	20	1.94
1206071--1206136	32	2.1	32	91	0	105	31	19	15	33	1.93
1206077--1206156	32	2.4	32	85	6	90	28	18	16	36	1.93
1206203--1206384	33	5.6	32	73	10	136	31	19	13	35	1.91
1206269--1206403	66	2.1	64	83	5	164	33	19	12	34	1.89
1206921--1206988	22	3.1	22	70	8	66	33	25	14	26	1.94
1207001--1207130	36	3.5	36	72	13	111	19	21	13	46	1.83
1207242--1207284	22	2.0	22	90	0	68	30	20	16	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129