genome.fa.s13.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  76  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14340574--14340618	23	2.0	23	100	0	90	57	13	13	15	1.65
14341718--14341765	22	2.1	23	84	3	62	37	2	18	41	1.63
14345319--14345392	37	2.0	37	97	0	139	37	6	29	25	1.82
14354365--14354472	50	2.2	51	82	11	129	26	1	22	49	1.60
14355090--14355141	5	9.8	5	81	8	50	1	17	1	78	0.93
14355090--14355143	21	2.5	20	80	13	63	1	16	1	79	0.91
14355159--14355204	11	4.0	11	81	10	56	4	8	2	84	0.83
14367640--14368091	161	2.8	159	81	8	442	32	11	15	40	1.83
14368253--14368439	96	1.9	97	83	5	245	33	6	13	46	1.68
14368350--14368870	159	3.3	157	82	8	594	35	11	13	39	1.81
14379106--14379186	40	2.0	40	90	0	126	37	11	17	34	1.85
14380142--14380188	15	3.1	15	87	0	58	36	10	0	53	1.36
14384139--14384166	2	14.0	2	100	0	56	0	0	50	50	1.00
14388299--14388341	22	2.0	22	85	0	59	46	9	9	34	1.68
14397790--14397834	2	22.5	2	100	0	90	48	0	0	51	1.00
14398432--14398516	42	2.0	42	90	0	134	31	14	16	37	1.88
14398953--14398984	6	5.2	6	96	3	55	53	0	0	46	1.00
14401032--14401091	27	2.3	27	88	2	86	51	6	1	40	1.38
14402575--14402610	2	18.0	2	100	0	72	50	0	0	50	1.00
14410575--14410601	12	2.2	12	100	0	54	25	14	44	14	1.84
14428009--14428052	10	4.3	10	88	5	61	84	0	11	4	0.77
14428009--14428046	12	3.5	11	89	7	51	86	0	10	2	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14428009--14428052	21	2.1	21	87	4	63	84	0	11	4	0.77
14430110--14430375	41	6.5	41	80	3	205	25	12	15	45	1.82
14430192--14430385	41	4.8	41	84	5	214	27	13	15	42	1.85
14433267--14433298	15	2.1	16	94	5	57	68	6	12	12	1.37
14439736--14439802	32	2.1	32	97	0	125	56	10	8	23	1.61
14441088--14441138	21	2.4	21	96	0	93	33	27	23	15	1.95
14441403--14441455	21	2.6	20	79	11	63	35	16	26	20	1.94
14444782--14444837	26	2.2	25	78	12	60	41	10	3	44	1.56
14444789--14444839	26	2.0	25	84	3	66	37	11	3	47	1.59
14445583--14445657	14	5.6	14	73	19	61	45	1	4	49	1.29
14445798--14445887	30	2.9	31	80	9	121	42	12	11	34	1.78
14446669--14446711	18	2.3	19	80	15	54	51	4	0	44	1.22
14456775--14456810	16	2.2	16	90	0	54	22	11	30	36	1.89
14459516--14459546	2	15.5	2	100	0	62	51	0	0	48	1.00
14462942--14462980	6	6.7	6	88	5	62	69	0	30	0	0.89
14463960--14463994	18	1.9	18	94	0	61	62	5	0	31	1.18
14478109--14478251	71	2.0	71	100	0	286	37	12	8	41	1.73
14478283--14478323	20	2.0	21	85	4	57	19	12	9	58	1.61
14479798--14479829	16	2.0	16	93	0	55	59	15	18	6	1.57
14479903--14479985	36	2.3	35	85	2	112	56	7	26	9	1.57
14480333--14480357	12	2.1	12	100	0	50	0	8	0	92	0.40
14480967--14481001	18	1.9	18	88	0	52	74	0	2	22	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14481107--14481150	3	14.0	3	82	17	54	65	0	2	31	1.05
14481408--14481461	14	4.0	14	80	9	58	53	22	3	20	1.61
14481413--14481461	13	3.7	13	81	10	55	55	24	2	18	1.53
14481413--14481469	26	2.2	26	83	0	69	54	26	3	15	1.57
14481707--14481735	13	2.1	14	93	6	51	75	0	3	20	0.94
14484003--14484182	63	2.9	61	77	10	184	38	11	13	36	1.82
14489279--14489320	22	1.9	22	85	9	59	19	11	7	61	1.52
14490815--14490853	20	2.0	20	85	5	53	15	5	5	74	1.17
14501803--14501923	61	2.0	61	91	3	199	55	16	7	20	1.65
14510416--14510506	29	3.1	29	70	14	80	59	4	6	29	1.42
14520027--14520069	22	2.0	22	90	0	68	34	11	9	44	1.73
14521660--14521718	24	2.6	22	78	7	64	64	0	0	35	0.94
14521663--14521715	22	2.4	22	81	9	63	64	0	0	35	0.94
14521678--14521713	15	2.3	16	90	4	56	55	0	0	44	0.99
14526906--14527025	62	1.9	62	94	0	213	22	15	9	52	1.71
14530838--14530880	22	2.0	22	85	0	59	34	11	6	46	1.67
14531513--14531559	16	2.9	16	83	0	67	19	17	25	38	1.92
14535041--14535074	17	2.1	16	88	5	50	26	35	17	20	1.95
14540253--14540297	23	2.0	23	86	0	63	37	22	8	31	1.85
14548443--14548528	28	3.1	28	73	18	74	38	4	2	54	1.34
14549273--14549314	17	2.4	17	80	15	50	42	0	0	57	0.99
14549388--14549453	32	2.1	31	86	5	89	43	4	3	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14549427--14549507	30	2.7	30	76	5	83	48	6	2	43	1.41
14549580--14549617	14	2.7	14	91	0	58	47	5	0	47	1.24
14549641--14549683	19	2.3	19	80	11	54	51	0	6	41	1.29
14551832--14551886	27	2.0	27	100	0	110	38	10	10	40	1.76
14551841--14551899	27	2.2	26	82	11	66	40	11	8	38	1.72
14552714--14552743	16	1.9	15	93	6	51	73	10	0	16	1.09
14552812--14552855	23	1.9	24	86	9	65	59	2	0	38	1.10
14557668--14559061	161	8.7	159	77	6	1100	43	14	8	32	1.77
14560195--14560231	13	2.8	13	87	0	56	62	8	5	24	1.44
14564244--14564453	111	1.9	112	91	1	350	40	9	5	44	1.60
14568404--14568446	21	2.2	20	87	8	61	41	4	11	41	1.62
14568740--14568777	18	2.2	18	85	4	51	47	5	18	28	1.70
14571263--14571304	16	2.6	16	92	0	66	4	4	9	80	0.99
14571470--14571670	57	3.5	56	81	6	174	41	19	13	25	1.88
14574308--14574373	20	3.4	20	73	10	66	10	1	16	71	1.21
14574712--14574872	49	3.3	49	81	3	189	42	14	11	31	1.82
14574712--14574831	50	2.4	49	87	1	159	41	14	11	32	1.81
14575455--14575500	22	2.1	22	83	0	56	21	17	26	34	1.95
14575792--14575825	15	2.2	16	90	10	54	5	20	0	73	1.04
14588675--14588699	11	2.3	11	100	0	50	92	0	8	0	0.40
14589739--14589791	27	2.0	27	100	0	106	52	13	11	22	1.71
14589744--14589793	17	3.4	17	65	35	51	54	16	12	18	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14595200--14595282	34	2.2	37	83	12	109	36	3	4	55	1.39
14602115--14602538	164	2.6	157	78	6	415	42	17	9	29	1.81
14605776--14605849	36	2.1	36	92	0	121	44	16	5	33	1.70
14608369--14608415	6	7.8	6	87	0	58	42	2	6	48	1.40
14608369--14608414	12	3.8	12	88	0	65	41	2	6	50	1.40
14608369--14608415	4	11.8	4	83	0	58	42	2	6	48	1.40
14611386--14611443	30	1.9	30	92	0	98	29	39	3	27	1.73
14612128--14612161	2	17.0	2	100	0	68	50	0	0	50	1.00
14613228--14613270	21	2.1	20	83	12	52	51	0	0	48	1.00
14613565--14613598	12	2.8	12	90	4	50	47	0	5	47	1.26
14613576--14613902	128	2.6	128	79	8	355	39	6	11	42	1.66
14617842--14617899	22	2.7	21	83	5	71	50	3	8	37	1.50
14618037--14618121	22	3.9	22	80	0	89	47	3	9	40	1.53
14618001--14618125	44	2.8	44	79	2	126	50	6	8	34	1.59
14618149--14618251	22	4.8	22	72	14	81	48	3	10	36	1.56
14618407--14618526	22	5.6	22	70	16	65	50	6	5	36	1.53
14618441--14618480	19	2.1	19	85	0	53	50	5	7	37	1.53
14618148--14618548	44	9.3	43	70	8	197	48	6	8	36	1.59
14618663--14618715	22	2.4	21	78	9	61	43	11	5	39	1.64
14618705--14618752	24	2.0	24	84	8	62	47	6	8	37	1.59
14618733--14618774	22	1.9	22	85	0	57	40	4	9	45	1.58
14619170--14619214	23	2.1	21	84	15	58	46	0	11	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14619047--14619247	22	9.2	22	66	12	56	46	3	9	39	1.56
14619188--14619272	44	1.9	44	83	9	111	47	3	9	40	1.53
14619301--14619334	16	2.2	15	94	5	59	52	5	5	35	1.50
14619318--14619377	22	2.8	21	82	10	68	48	3	10	38	1.53
14619318--14619377	21	2.8	22	82	10	70	48	3	10	38	1.53
14619434--14619554	22	5.5	22	79	4	84	50	3	9	37	1.51
14619461--14619552	44	2.1	43	80	6	96	46	3	9	40	1.53
14619477--14619747	22	12.2	22	72	9	156	44	5	7	41	1.57
14620143--14620210	21	3.2	20	80	15	84	51	8	2	36	1.48
14620143--14620258	11	10.5	11	68	25	66	51	8	2	37	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129