genome.fa.s13.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  25  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5035895--5036169	59	4.6	60	81	8	312	35	10	5	48	1.61
5035896--5036264	117	3.0	117	83	8	411	35	10	5	48	1.60
5036098--5036230	66	2.0	67	86	1	187	34	13	5	46	1.66
5036315--5036364	23	2.3	22	80	12	59	80	6	4	10	1.02
5036315--5036364	22	2.2	23	78	3	57	80	6	4	10	1.02
5036315--5036400	12	6.7	12	69	21	50	77	9	3	9	1.09
5037211--5037243	17	1.9	17	88	11	50	66	6	3	24	1.28
5037844--5038110	114	2.3	114	87	2	385	35	15	12	36	1.85
5038175--5038214	21	1.9	21	94	0	71	37	12	10	40	1.77
5038135--5038367	79	2.9	79	87	1	333	33	16	11	38	1.84
5038254--5038309	20	2.7	21	83	2	69	35	14	8	41	1.77
5038275--5038409	58	2.3	58	88	0	207	33	17	10	38	1.84
5038196--5038488	137	2.1	137	89	0	451	33	15	11	39	1.83
5038235--5038474	79	3.0	78	81	8	213	33	16	10	38	1.84
5038339--5038508	79	2.2	79	88	4	261	34	14	10	41	1.80
5038470--5038573	21	4.9	20	77	6	84	40	10	6	42	1.66
5038472--5038594	42	2.8	42	83	9	124	39	9	7	43	1.65
5038470--5038598	63	2.0	65	80	11	149	40	10	6	42	1.65
5039695--5039750	28	2.0	28	93	3	96	8	14	0	76	1.00
5039684--5039744	9	6.4	9	73	16	52	8	14	0	77	0.99
5039722--5039769	21	2.3	20	89	7	69	6	14	0	79	0.92
5039677--5039764	38	2.3	38	81	9	99	7	14	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5042306--5042357	24	2.2	23	86	10	77	28	5	32	32	1.81
5042314--5042362	24	2.0	24	100	0	98	30	4	32	32	1.77
5044789--5044843	26	2.1	27	83	9	71	45	9	1	43	1.46
5044868--5045102	61	3.9	60	78	13	180	33	8	5	51	1.58
5045157--5045220	21	3.0	21	76	13	58	73	7	3	15	1.19
5045158--5045244	43	2.0	43	82	8	106	73	9	3	13	1.20
5054276--5054429	53	3.0	54	84	9	171	24	25	9	40	1.86
5054705--5054751	25	2.0	25	83	8	62	27	38	6	27	1.81
5055348--5055504	52	3.0	51	87	5	199	25	25	9	39	1.86
5058441--5058466	1	26.0	1	100	0	52	0	0	0	100	0.00
5059343--5059395	27	2.0	27	85	7	72	54	0	0	45	0.99
5062498--5062527	2	15.0	2	92	0	51	50	0	3	46	1.18
5068954--5068986	16	2.2	16	89	10	52	63	0	0	36	0.95
5071661--5071688	2	14.0	2	100	0	56	50	0	0	50	1.00
5072661--5072714	23	2.2	24	83	6	65	42	0	3	53	1.18
5073542--5073596	28	1.9	29	88	3	85	63	0	7	29	1.21
5074459--5074509	22	2.3	23	83	10	61	66	1	3	27	1.20
5074459--5074523	21	3.0	21	78	13	51	61	3	3	32	1.27
5079471--5079495	2	12.5	2	100	0	50	48	0	0	52	1.00
5089104--5090144	186	5.6	185	82	6	1073	40	10	11	37	1.76
5096233--5096491	140	1.9	140	81	4	317	31	6	15	45	1.73
5099561--5099626	18	3.8	18	76	11	66	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5099561--5099602	17	2.6	16	85	14	52	40	0	0	59	0.97
5101186--5101213	2	14.0	2	100	0	56	50	0	0	50	1.00
5105069--5105113	19	2.3	20	81	11	58	46	8	4	40	1.55
5108053--5108087	2	17.5	2	87	0	52	42	0	5	51	1.25
5111375--5111414	3	13.0	3	94	5	71	35	0	0	65	0.93
5112242--5112300	23	2.6	23	76	15	68	16	0	10	72	1.10
5112255--5112306	21	2.4	23	87	9	74	19	0	9	71	1.13
5112269--5112363	11	8.4	11	70	16	52	25	1	6	67	1.21
5112269--5112324	23	2.5	22	83	11	62	21	0	8	69	1.15
5112269--5112306	11	3.4	11	88	3	58	18	0	7	73	1.06
5112764--5112795	14	2.3	14	94	0	55	81	0	0	18	0.70
5112925--5112956	7	4.6	7	96	0	55	62	0	0	37	0.95
5112920--5112956	14	2.6	14	86	4	56	64	0	0	35	0.94
5113301--5113351	3	17.0	3	100	0	102	66	0	0	33	0.92
5113508--5113551	20	2.2	20	84	8	54	34	15	9	40	1.79
5114943--5114977	16	2.2	16	94	0	61	42	25	0	31	1.55
5124693--5124788	40	2.4	39	91	3	156	29	14	14	41	1.85
5124906--5125319	40	10.3	39	72	11	271	27	12	20	40	1.87
5125026--5125318	80	3.7	79	85	6	371	25	10	21	41	1.85
5125511--5125564	6	9.0	6	93	0	54	50	0	0	50	1.00
5125542--5125567	3	8.7	3	100	0	52	34	0	0	65	0.93
5129788--5129845	24	2.5	24	86	8	77	55	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5129862--5129907	23	1.9	25	86	8	69	52	0	0	47	1.00
5130501--5130549	21	2.3	20	86	6	62	40	4	0	55	1.19
5130512--5130569	18	3.1	18	82	7	53	39	0	0	60	0.97
5130851--5131161	169	1.8	169	82	2	401	41	9	10	37	1.74
5147874--5147914	15	2.6	16	77	22	50	43	0	0	56	0.99
5147890--5147965	28	2.7	27	82	9	91	42	1	3	52	1.28
5147893--5147960	28	2.4	29	85	9	95	42	1	4	51	1.31
5147890--5147975	28	3.1	27	77	9	68	41	1	4	52	1.30
5152304--5152387	43	2.0	43	95	0	150	35	17	11	34	1.87
5154155--5154244	45	2.0	45	91	0	144	36	11	27	24	1.89
5154821--5154857	16	2.3	16	95	0	65	27	10	21	40	1.86
5156315--5156348	13	2.8	13	86	13	54	32	0	17	50	1.47
5156315--5156348	6	5.7	6	86	13	52	32	0	17	50	1.47
5161631--5161670	20	2.0	20	100	0	80	30	10	15	45	1.78
5173600--5173641	17	2.5	17	84	0	57	33	7	11	47	1.68
5178490--5178797	155	2.0	155	90	1	492	36	20	13	28	1.92
5185237--5185262	2	13.0	2	100	0	52	50	0	0	50	1.00
5185616--5185668	17	3.0	17	78	10	61	79	0	3	16	0.88
5185620--5185663	19	2.4	18	81	7	52	84	0	4	11	0.77
5185711--5185772	22	2.9	22	76	7	56	61	8	0	30	1.25
5187933--5187964	14	2.3	14	94	0	55	43	0	0	56	0.99
5201308--5201369	30	2.1	29	88	5	90	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5201950--5202009	27	2.3	27	88	2	86	36	8	1	53	1.41
5202083--5202122	14	2.9	14	88	3	55	15	5	2	77	1.04
5204749--5204811	3	20.7	3	96	3	117	65	0	0	34	0.93
5205186--5205211	10	2.6	10	100	0	52	53	11	11	23	1.69
5205525--5205641	23	4.8	23	78	13	103	19	5	2	72	1.15
5205943--5205971	14	2.0	15	93	6	51	62	6	0	31	1.22
5211464--5211496	10	3.0	11	86	13	50	87	0	3	9	0.63
5216398--5216972	66	8.7	67	75	7	372	22	20	12	44	1.84
5216419--5216903	67	7.4	66	75	10	261	22	20	11	45	1.84
5216396--5217033	133	4.9	131	75	7	499	22	20	11	45	1.83
5217358--5217417	3	20.0	3	100	0	120	33	0	0	66	0.92
5218087--5218179	11	8.3	11	75	12	82	17	4	2	76	1.05
5218089--5218182	6	15.3	6	69	18	52	18	4	2	75	1.06
5218087--5218174	34	2.5	33	81	15	90	18	4	2	75	1.09
5218094--5218209	26	4.7	26	74	18	88	18	6	2	72	1.17
5218266--5218297	14	2.4	13	94	5	55	75	0	0	25	0.81
5218508--5218540	15	2.1	16	88	5	50	57	3	0	39	1.14
5218984--5219115	67	2.0	67	89	0	201	45	9	6	39	1.61
5232784--5232883	50	2.0	50	90	0	155	31	12	5	52	1.60
5237133--5237182	3	16.7	3	100	0	100	32	0	0	68	0.90
5237474--5237500	14	1.9	14	100	0	54	25	0	0	74	0.83
5237789--5237819	16	1.9	16	93	0	53	35	0	3	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5238344--5238446	46	2.2	45	87	3	143	36	15	7	39	1.76
5238989--5239028	3	13.3	3	83	0	53	40	2	27	30	1.70
5238989--5239028	12	3.3	12	92	0	62	40	2	27	30	1.70
5240783--5240814	2	16.0	2	100	0	64	50	0	0	50	1.00
5240828--5240876	15	2.9	18	85	11	52	69	6	8	16	1.33
5241936--5241977	20	2.1	20	100	0	84	42	0	4	52	1.22
5244532--5244843	154	2.0	154	100	0	624	32	16	22	29	1.95
5250652--5250676	10	2.5	10	100	0	50	64	8	20	8	1.46
5252103--5252313	116	1.8	116	89	2	334	31	20	16	31	1.94
5257738--5258648	303	3.0	303	95	0	1635	35	12	14	37	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129