genome.fa.s13.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  52  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10293982--10294025	23	2.0	23	81	4	54	56	2	2	38	1.24
10294444--10294667	111	2.0	111	99	0	439	35	11	8	44	1.72
10296620--10296701	43	1.9	43	85	5	112	20	9	18	51	1.74
10297916--10297972	19	2.9	18	82	15	60	75	3	5	15	1.12
10298904--10298933	3	10.0	3	100	0	60	33	0	33	33	1.58
10299425--10299493	32	2.1	33	83	2	86	43	13	8	34	1.74
10299584--10299660	33	2.4	33	84	2	102	41	15	7	35	1.76
10306155--10306609	229	2.0	229	95	0	820	31	12	14	40	1.84
10309145--10309187	19	2.2	20	80	12	54	6	25	9	58	1.54
10311978--10312076	26	3.8	25	76	5	90	22	2	33	42	1.65
10311993--10312041	19	2.5	20	78	15	57	24	0	36	38	1.56
10311978--10312129	13	11.8	13	73	17	72	21	1	32	43	1.64
10312002--10312111	19	5.7	19	68	19	68	22	1	32	42	1.64
10311985--10312149	7	25.3	6	72	16	91	21	1	32	43	1.63
10312083--10312143	33	1.9	31	87	12	88	19	1	31	47	1.59
10312106--10312158	20	2.7	18	77	13	52	18	3	32	45	1.68
10313159--10313205	13	3.6	13	77	11	51	4	23	0	72	1.02
10314242--10314279	19	2.0	20	84	5	51	26	7	15	50	1.72
10316616--10316659	19	2.4	18	82	10	54	27	6	18	47	1.73
10316658--10316713	24	2.3	24	87	3	76	35	7	7	50	1.57
10316673--10316780	56	1.9	56	86	3	155	30	3	11	54	1.53
10316673--10316831	25	6.2	25	72	22	116	30	3	10	55	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10316893--10316950	18	3.3	18	73	4	64	31	5	13	50	1.64
10316881--10316950	35	2.0	35	91	0	113	31	5	12	50	1.64
10316916--10316985	23	3.1	23	89	4	115	30	4	11	54	1.55
10316914--10316982	22	3.1	22	89	4	111	30	4	11	53	1.56
10320488--10320544	31	1.9	30	89	7	89	36	7	17	38	1.77
10320488--10320569	34	2.6	33	84	9	100	36	7	18	37	1.79
10320559--10320794	50	4.6	51	77	9	207	36	15	17	30	1.91
10321063--10321128	34	2.0	34	87	3	98	39	19	13	27	1.89
10322124--10322197	15	5.4	13	68	17	51	4	13	1	81	0.91
10322572--10322652	32	2.6	29	80	9	81	7	19	2	70	1.23
10325929--10325980	25	2.1	25	92	0	86	61	0	15	23	1.33
10326115--10326154	15	2.8	14	85	14	55	0	2	12	85	0.71
10326107--10326163	8	7.0	8	80	15	64	1	3	12	82	0.87
10326932--10327077	25	5.8	25	75	0	121	48	9	12	29	1.72
10326916--10327059	50	2.9	50	80	4	148	51	9	11	28	1.68
10327128--10327174	19	2.3	20	86	13	62	12	12	0	74	1.07
10327362--10327504	25	5.9	25	81	4	186	51	4	13	30	1.62
10327363--10327504	48	2.9	48	87	4	180	51	4	13	30	1.62
10327362--10327504	73	2.0	73	94	0	250	51	4	13	30	1.62
10328113--10328158	10	4.4	11	79	15	53	0	13	2	84	0.71
10328638--10328687	20	2.6	19	84	6	73	24	2	30	44	1.65
10328638--10328721	13	6.5	13	72	14	59	23	2	28	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10328627--10328721	39	2.4	39	77	18	99	23	3	29	44	1.69
10328638--10328721	6	13.0	6	72	13	60	23	2	28	45	1.66
10328636--10328726	19	4.7	21	78	11	72	24	3	27	45	1.69
10329623--10329662	21	1.9	21	85	10	55	60	10	15	15	1.60
10339280--10339325	15	3.1	15	76	14	51	21	0	4	73	1.00
10340599--10340651	4	14.5	4	81	15	62	75	1	22	0	0.90
10340601--10340635	7	4.9	7	96	3	61	74	0	25	0	0.82
10340600--10340651	18	2.8	18	77	8	52	76	1	21	0	0.87
10340666--10340696	3	10.7	3	93	6	55	67	0	0	32	0.91
10340670--10340696	14	1.9	14	100	0	54	66	0	0	33	0.92
10340658--10340713	9	5.8	9	82	15	51	69	0	3	26	1.04
10340665--10340710	11	4.6	10	82	17	60	69	0	2	28	1.00
10341604--10341657	22	2.6	21	80	8	65	61	3	0	35	1.14
10343072--10343138	32	2.1	32	82	0	80	49	19	2	28	1.63
10343092--10343171	16	5.0	16	74	17	76	52	18	1	27	1.53
10349213--10349261	23	2.1	23	100	0	98	32	22	24	20	1.98
10349270--10349791	173	3.0	174	86	3	750	36	18	14	31	1.91
10357981--10358009	13	2.1	14	93	6	51	68	0	0	31	0.89
10358172--10358237	28	2.2	32	76	17	79	31	6	1	60	1.30
10362240--10362282	18	2.4	18	84	0	50	20	13	18	46	1.83
10362978--10363187	102	2.0	102	80	11	234	35	7	12	44	1.69
10363378--10363436	18	3.2	18	79	13	66	47	10	6	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10363361--10363418	21	2.8	21	89	2	82	46	13	5	34	1.66
10363527--10363553	7	3.9	7	100	0	54	59	11	0	29	1.32
10364690--10364724	18	2.0	18	88	5	54	68	5	0	25	1.11
10365138--10365322	34	5.3	35	78	9	101	36	16	10	35	1.84
10365226--10365326	34	3.0	34	91	2	159	34	15	10	38	1.83
10365394--10365510	17	6.6	19	74	12	81	41	11	14	32	1.83
10365432--10365504	34	2.1	35	87	2	103	41	10	12	35	1.78
10365449--10365516	18	3.9	18	80	7	77	44	11	14	29	1.81
10365375--10365565	52	3.7	50	75	7	152	39	12	14	34	1.83
10365420--10365635	17	12.6	17	71	9	86	40	12	13	33	1.82
10365502--10365650	68	2.2	68	82	2	174	38	12	14	34	1.85
10365536--10365650	34	3.4	33	72	4	104	38	13	13	34	1.84
10365524--10365651	68	1.9	68	85	3	177	39	13	13	33	1.83
10365782--10365892	44	2.5	44	81	5	127	44	12	9	33	1.76
10365947--10365978	16	2.0	16	93	0	55	43	9	6	40	1.62
10367039--10367082	18	2.4	19	92	3	72	6	11	2	79	1.01
10370497--10370544	21	2.3	21	81	0	60	64	8	2	25	1.32
10371536--10371614	39	2.1	38	81	9	90	31	11	12	44	1.78
10371879--10371950	21	3.3	23	79	12	82	50	8	5	36	1.56
10372730--10372781	18	2.8	18	76	2	59	53	23	3	19	1.61
10373166--10373199	18	1.9	18	88	5	52	64	5	2	26	1.30
10375706--10376297	238	2.5	236	79	4	627	32	9	5	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10376162--10376197	18	1.9	18	88	5	54	19	0	5	75	1.00
10375705--10376269	236	2.4	234	80	5	596	33	9	5	51	1.58
10381775--10382002	125	1.8	124	82	3	296	45	6	7	40	1.58
10381892--10382016	62	2.0	62	84	9	166	49	6	3	40	1.44
10391705--10391847	63	2.3	61	82	8	155	36	12	18	32	1.89
10391966--10392004	19	2.1	19	95	0	69	43	10	12	33	1.77
10396135--10396191	22	2.6	22	83	5	71	28	21	22	28	1.99
10395946--10396289	126	2.7	126	81	4	408	33	14	15	37	1.87
10395908--10396300	126	3.1	127	78	8	403	34	15	14	35	1.87
10396274--10396314	22	1.9	22	90	5	66	41	26	4	26	1.76
10396513--10396552	20	2.0	20	100	0	80	35	10	10	45	1.71
10397058--10397389	145	2.3	146	84	3	411	33	13	10	42	1.78
10399447--10399487	21	1.9	22	85	5	57	43	2	9	43	1.50
10400936--10400970	17	2.1	17	100	0	70	34	5	0	60	1.21
10402845--10402870	4	6.5	4	100	0	52	76	0	0	23	0.78
10404434--10404524	46	2.0	46	89	6	141	41	10	3	43	1.56
10404740--10404799	29	2.0	29	83	3	75	28	6	3	61	1.37
10408093--10408171	37	2.1	37	81	11	99	44	1	1	53	1.16
10408113--10408170	18	3.2	18	76	11	64	48	1	1	48	1.22
10409162--10409196	2	17.5	2	93	0	61	48	2	0	48	1.16
10409196--10409238	2	21.5	2	95	0	77	2	0	46	51	1.13
10409733--10409762	2	15.0	2	100	0	60	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10410090--10410125	2	18.0	2	100	0	72	50	0	0	50	1.00
10410647--10411221	292	2.0	292	89	1	884	36	13	9	40	1.77
10414027--10414057	16	1.9	16	100	0	62	58	0	3	38	1.15
10416418--10416459	16	3.0	14	83	16	52	50	2	0	47	1.14
10416436--10416476	19	2.1	20	82	13	50	53	0	2	43	1.13
10417044--10417116	29	2.4	30	90	4	121	45	10	9	34	1.72
10417177--10417225	19	2.6	19	83	0	53	34	24	14	26	1.94
10417684--10417712	5	5.8	5	100	0	58	58	0	0	41	0.98
10427023--10427083	31	1.9	31	86	3	86	40	0	6	52	1.27
10428829--10428880	24	2.2	24	82	6	61	30	3	7	57	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129