Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  11  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1399570--1399616
3
15.7
3
86
0
67
61
2
4
31
1.27
1402762--1402921
88
1.8
88
85
6
227
30
13
17
39
1.88
1404910--1404943
13
2.5
14
85
9
52
38
14
17
29
1.90
1408020--1408044
6
4.2
6
100
0
50
64
0
36
0
0.94
1408808--1408837
2
15.0
2
100
0
60
0
50
0
50
1.00
1410894--1410959
33
2.0
33
87
0
96
33
18
9
39
1.82
1414125--1414151
7
3.9
7
100
0
54
88
0
0
11
0.50
1418763--1418825
20
3.2
19
84
8
83
80
0
9
9
0.89
1418756--1418850
46
2.1
46
84
11
124
80
0
11
8
0.92
1418755--1418859
9
12.0
8
74
17
68
79
0
12
8
0.95
1418774--1418876
18
5.9
17
76
18
88
76
0
13
9
1.01
1418763--1418867
35
2.9
35
81
14
115
78
0
12
9
0.97
1418756--1418867
8
12.4
9
76
22
80
78
0
11
9
0.96
1419283--1419509
117
2.0
115
92
5
377
49
8
17
25
1.74
1420156--1420225
33
2.1
33
83
0
86
27
11
24
37
1.89
1420421--1420706
45
6.5
43
73
9
179
27
11
13
46
1.78
1420420--1420657
134
1.8
130
82
5
307
28
10
14
47
1.77
1420421--1420862
89
5.0
87
72
9
286
27
12
15
44
1.82
1420414--1420706
134
2.2
131
78
6
297
27
12
13
46
1.79
1420414--1420849
44
9.8
44
72
11
183
27
12
14
44
1.82
1421121--1421166
4
11.8
4
86
4
67
23
4
0
71
1.03
1421580--1421618
20
2.0
20
89
0
60
28
10
12
48
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1422042--1422088
17
2.7
17
83
9
51
14
0
6
78
0.93
1422830--1422883
20
2.7
19
75
8
54
38
14
12
33
1.85
1423294--1424035
60
12.3
59
82
6
753
49
4
9
35
1.58
1423346--1424035
180
3.8
178
87
3
902
48
5
10
35
1.60
1427311--1427347
15
2.5
15
90
0
56
24
16
5
54
1.63
1433855--1433901
20
2.3
20
78
10
51
42
0
17
40
1.49
1451454--1451490
8
4.6
8
93
0
56
32
0
0
67
0.91
1451458--1451488
4
7.8
4
92
0
53
29
0
0
70
0.87
1451453--1451490
12
3.2
12
88
0
58
34
0
0
65
0.93
1453544--1453573
2
15.0
2
100
0
60
50
0
0
50
1.00
1453746--1453793
2
23.5
2
82
4
60
47
0
6
45
1.27
1453936--1453966
15
2.0
16
93
6
55
0
22
0
77
0.77
1457907--1457961
2
28.0
2
88
3
85
45
0
0
54
0.99
1458851--1458892
21
2.0
21
100
0
84
28
9
14
47
1.75
1463392--1463509
61
1.9
61
91
0
191
48
29
16
5
1.68
1476154--1476201
22
2.1
24
84
7
64
31
0
4
64
1.12
1476163--1476207
22
2.0
22
82
0
54
37
0
4
57
1.19
1476191--1476244
20
2.7
20
73
21
51
53
0
1
44
1.11
1492351--1492376
7
3.7
7
100
0
52
84
15
0
0
0.62
1499166--1499209
13
3.5
12
82
17
54
31
0
2
65
1.05
1501788--1501815
5
5.6
5
100
0
56
82
0
0
17
0.68
1501787--1501825
15
2.6
15
84
8
53
79
0
5
15
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1502149--1502178
13
2.3
13
94
0
51
83
6
0
10
0.81
1502589--1502654
3
22.0
3
100
0
132
66
0
0
33
0.92
1502659--1502729
26
2.7
25
82
8
79
33
18
26
21
1.96
1503115--1503516
119
3.4
117
76
4
360
43
13
21
21
1.87
1503216--1503432
117
1.8
118
80
7
262
45
12
20
22
1.84
1504412--1504445
10
3.0
12
83
16
54
0
8
0
91
0.43
1504418--1504445
10
2.8
10
100
0
56
0
7
0
92
0.37
1504936--1505001
22
3.0
22
90
0
114
36
6
12
45
1.66
1508989--1509031
22
2.0
22
95
0
77
39
4
9
46
1.57
1514979--1515015
16
2.3
16
100
0
74
37
0
21
40
1.54
1519649--1519680
5
6.8
5
86
13
50
81
0
0
18
0.70
1519623--1519681
28
2.1
28
83
3
73
74
0
5
20
1.00
1519967--1520008
11
3.9
11
81
6
59
73
11
0
14
1.09
1519965--1520005
21
2.0
21
100
0
82
75
14
0
9
1.04
1519961--1520004
10
4.3
10
80
5
52
75
13
0
11
1.06
1520467--1520576
26
4.3
25
73
5
85
29
17
30
22
1.97
1522004--1522042
13
2.9
14
80
7
53
30
0
2
66
1.05
1522262--1522310
3
16.3
3
100
0
98
65
0
0
34
0.93
1526916--1526967
23
2.3
23
79
0
59
55
5
7
30
1.52
1534760--1534793
8
4.2
8
96
0
59
0
14
0
85
0.60
1541366--1541407
12
3.4
12
78
18
50
21
21
2
54
1.56
1545788--1545823
3
11.7
3
94
5
63
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1547868--1547901
2
17.0
2
100
0
68
50
0
0
50
1.00
1549402--1549430
3
9.7
3
100
0
58
34
0
0
65
0.93
1556593--1556621
14
2.1
14
100
0
58
37
0
20
41
1.53
1558408--1558434
2
13.5
2
100
0
54
48
0
0
51
1.00
1570970--1570994
2
12.5
2
100
0
50
48
0
0
52
1.00
1572255--1572288
3
11.3
3
100
0
68
67
0
32
0
0.91
1578524--1578554
2
15.5
2
100
0
62
48
0
0
51
1.00
1581538--1581583
23
2.0
23
100
0
92
56
0
30
13
1.37
1584596--1584632
2
18.5
2
100
0
74
51
0
0
48
1.00
1584564--1584695
68
1.9
68
100
0
264
48
6
12
33
1.65
1584664--1584695
2
16.0
2
100
0
64
50
0
0
50
1.00
1587478--1587505
2
14.0
2
100
0
56
50
0
0
50
1.00
1594699--1594725
14
1.9
14
100
0
54
70
0
0
29
0.88
1594849--1594890
11
3.7
11
81
6
57
59
0
0
40
0.97
1599235--1599311
39
2.0
39
94
0
136
46
1
2
49
1.23
1619350--1619394
2
22.5
2
100
0
90
0
0
48
51
1.00
1630200--1630253
20
2.7
20
75
11
56
46
0
0
53
1.00
1630189--1630266
23
3.5
22
70
18
63
44
1
0
53
1.08
1630893--1630937
20
2.2
20
84
4
54
57
0
6
35
1.25
1644235--1644290
28
2.0
27
82
3
67
67
1
0
30
1.01
1644271--1644306
15
2.4
15
100
0
72
55
0
0
44
0.99
1644266--1644303
20
1.9
20
88
0
58
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1644833--1644888
16
3.3
17
75
7
60
39
0
0
60
0.97
1644833--1644919
34
2.6
36
82
12
96
40
0
0
59
0.97
1644864--1644919
20
2.8
22
71
20
59
41
0
0
58
0.98
1644640--1644909
143
1.9
143
83
0
353
37
3
4
54
1.37
1645808--1645834
12
2.2
12
100
0
54
37
0
0
62
0.95
1650647--1650675
2
14.5
2
100
0
58
51
0
48
0
1.00
1664761--1664831
20
3.7
20
78
16
78
38
0
0
61
0.96
1664765--1664835
10
8.0
9
70
23
53
38
0
0
61
0.96
1664790--1664833
16
2.8
16
83
10
54
38
0
0
61
0.96
1664785--1664832
14
3.3
15
80
11
55
41
0
0
58
0.98
1672489--1672546
21
2.8
21
71
5
55
25
25
12
36
1.91
1687678--1687741
29
2.2
28
78
13
76
64
3
1
31
1.19
1691307--1691335
2
14.5
2
100
0
58
0
51
0
48
1.00
1694108--1694139
16
2.0
16
100
0
64
31
18
6
43
1.75
1695456--1695490
12
2.8
13
83
16
56
45
0
0
54
0.99
1696346--1696388
21
2.0
21
90
9
68
79
4
9
6
1.06
1696337--1696388
21
2.5
21
81
9
63
78
3
11
5
1.05
1703847--1703910
32
2.0
32
93
0
110
39
17
14
29
1.88
1707723--1707763
21
2.0
21
85
9
57
43
0
2
53
1.13
1709193--1709236
19
2.4
18
88
7
70
47
0
2
50
1.13
1710077--1710120
3
14.7
3
100
0
88
34
0
0
65
0.93
1711664--1711723
18
3.3
18
84
15
79
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1711706--1711749
23
2.0
22
82
13
54
47
0
0
52
1.00
1716369--1716723
182
2.0
180
93
1
602
43
18
10
28
1.82
1726932--1727014
41
2.0
41
92
0
139
26
18
10
44
1.82
1728194--1728221
12
2.3
12
100
0
56
32
39
14
14
1.86
1729685--1729715
16
1.9
16
93
0
53
48
0
0
51
1.00
1729927--1729962
18
2.0
18
88
0
54
52
2
2
41
1.30
1734424--1734504
35
2.3
35
100
0
162
12
32
23
32
1.92
1736383--1736409
13
2.1
13
100
0
54
37
7
7
48
1.59
1751877--1751911
6
5.8
6
89
0
52
34
0
14
51
1.42
1752422--1752475
27
2.0
27
100
0
108
48
11
22
18
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129