genome.fa.s13.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  62  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11946696--11946740	3	15.0	3	100	0	90	66	0	0	33	0.92
11946739--11946767	3	9.7	3	100	0	58	34	31	0	34	1.58
11947411--11947480	9	7.6	9	70	10	52	55	2	2	38	1.29
11947447--11947485	18	2.1	19	86	13	55	51	2	0	46	1.14
11947444--11947494	18	2.9	17	75	11	50	54	1	0	43	1.11
11947583--11947621	15	2.6	15	87	0	51	58	5	0	35	1.20
11950621--11950662	2	21.5	2	85	4	59	47	2	0	50	1.14
11958452--11958477	6	4.3	6	100	0	52	34	0	15	50	1.45
11960697--11960747	17	3.1	16	70	29	52	43	0	5	50	1.26
11963170--11963295	62	2.0	62	93	0	216	22	20	15	41	1.90
11967857--11967900	17	2.6	16	82	10	52	18	4	2	75	1.09
11971640--11971687	21	2.1	21	85	11	60	64	0	35	0	0.94
11974235--11974267	16	2.1	16	94	0	57	36	6	15	42	1.71
11976749--11976846	21	4.7	19	79	12	88	80	0	11	8	0.90
11976754--11976851	32	3.1	32	80	12	121	78	0	12	9	0.96
11976770--11976837	23	3.0	23	81	10	68	80	0	10	8	0.89
11976753--11976853	31	3.2	31	77	9	114	79	0	11	8	0.94
11977960--11978043	44	2.0	42	83	4	105	27	10	20	41	1.85
11977951--11978161	108	2.0	109	82	7	261	32	12	17	37	1.87
11977987--11978207	108	2.1	108	80	10	240	34	10	18	36	1.85
11978635--11979059	44	9.8	43	80	4	334	26	12	15	44	1.83
11978635--11979046	87	4.7	86	79	3	369	26	12	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11979286--11979320	12	2.7	13	91	8	54	22	0	0	77	0.78
11979286--11979320	17	1.9	19	88	11	56	22	0	0	77	0.78
11983388--11983423	17	2.1	17	94	0	63	72	13	5	8	1.27
11985596--11985642	20	2.3	20	85	7	60	34	14	17	34	1.90
11997043--11997293	129	1.9	129	97	0	475	31	17	15	34	1.92
12001848--12001892	12	3.8	12	87	0	63	51	4	0	44	1.21
12002102--12002143	20	2.1	20	95	0	75	45	11	14	28	1.80
12003912--12004071	62	2.6	63	79	11	152	36	14	18	30	1.90
12004287--12004430	62	2.3	62	84	7	186	38	16	15	29	1.89
12007761--12007812	25	2.1	25	96	0	95	44	26	5	23	1.76
12007770--12007859	12	7.1	12	73	12	72	46	27	4	21	1.70
12007815--12007882	28	2.5	28	92	2	111	48	26	2	22	1.64
12009181--12009411	126	1.8	126	81	3	286	43	13	9	33	1.77
12008430--12009869	749	1.9	749	82	5	1809	41	11	12	34	1.79
12011721--12011967	118	2.1	118	97	0	467	35	17	16	31	1.92
12014004--12014060	8	7.0	8	79	13	55	21	0	1	77	0.86
12014013--12014070	11	5.3	11	74	15	57	18	0	1	79	0.82
12014004--12014069	19	3.3	20	83	12	82	21	0	1	77	0.85
12014007--12014069	33	1.9	33	90	6	101	20	0	1	77	0.85
12014005--12014070	21	3.3	19	80	17	71	19	0	1	78	0.82
12014651--12014689	20	2.0	20	89	0	60	51	15	17	15	1.77
12015330--12015598	41	6.5	41	84	5	319	44	20	10	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12015332--12015598	83	3.2	80	82	9	322	44	19	10	25	1.82
12015691--12015724	17	2.0	17	94	0	59	50	5	11	32	1.63
12015840--12015909	33	2.1	33	86	0	95	31	18	18	31	1.95
12016593--12016638	9	4.8	9	80	15	56	6	10	0	82	0.83
12016592--12016641	10	5.0	10	80	9	66	8	12	0	80	0.92
12016590--12016639	21	2.4	21	93	3	84	6	10	0	84	0.79
12025921--12026024	45	2.3	45	84	0	145	49	5	18	26	1.70
12027596--12027626	16	1.9	16	100	0	62	12	0	3	83	0.75
12027579--12027631	18	2.8	18	85	5	61	13	0	5	81	0.86
12027718--12027774	25	2.2	25	84	9	71	40	7	5	47	1.53
12027844--12027883	18	2.2	18	86	8	55	82	7	2	7	0.92
12031146--12031902	236	3.2	237	82	2	865	33	12	12	41	1.81
12031736--12032074	174	1.9	174	81	4	407	33	14	12	40	1.83
12033180--12033272	37	2.5	37	85	0	114	20	11	20	47	1.81
12036410--12036486	35	2.2	35	85	0	109	35	20	10	33	1.87
12036586--12036858	126	2.2	127	80	7	304	33	17	12	36	1.87
12037093--12037223	63	2.1	63	81	8	151	31	16	12	39	1.86
12039954--12040017	4	15.8	4	73	20	53	53	1	0	45	1.10
12039954--12040016	19	3.6	18	83	14	78	52	1	0	46	1.10
12040556--12040666	34	3.3	34	79	9	104	36	16	9	37	1.82
12043752--12043890	66	2.1	65	80	5	156	37	12	12	37	1.81
12043873--12044012	61	2.3	62	76	8	144	42	13	12	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12044934--12045010	3	27.7	3	75	15	67	35	0	3	61	1.15
12044936--12045031	5	18.8	5	80	13	74	36	0	4	59	1.17
12044936--12045031	13	6.3	15	72	18	74	36	0	4	59	1.17
12044963--12045029	18	3.7	19	81	15	79	38	0	4	56	1.19
12044958--12045028	37	1.9	39	86	11	105	38	0	4	57	1.18
12044934--12045028	12	8.2	11	77	14	77	36	0	4	58	1.17
12045894--12045935	17	2.4	18	88	4	59	23	0	0	76	0.79
12046136--12046180	19	2.3	20	77	11	58	75	0	4	20	0.97
12046135--12046177	23	1.9	22	85	4	59	74	0	4	20	1.00
12052570--12052682	3	41.0	3	78	16	111	30	2	0	65	1.12
12052589--12052686	40	2.6	39	83	15	127	30	2	1	66	1.10
12053442--12053523	24	3.5	22	77	14	85	23	1	1	74	0.96
12053457--12053522	18	3.8	17	72	18	55	24	1	0	74	0.91
12053459--12053534	17	4.4	17	75	15	57	27	2	0	69	1.01
12053442--12053524	23	3.6	21	76	15	76	24	1	1	73	0.97
12053662--12053708	8	5.6	8	78	16	51	80	0	4	14	0.85
12053662--12053709	9	5.3	9	80	5	53	81	0	4	14	0.84
12053668--12053711	9	4.6	10	82	5	56	79	0	4	15	0.89
12059311--12059384	26	2.7	27	78	12	80	54	6	0	39	1.27
12059427--12059469	21	2.0	21	86	0	59	37	2	4	55	1.33
12062614--12062663	25	2.0	24	81	11	57	34	2	2	62	1.18
12066212--12066245	13	2.6	14	86	13	54	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12066212--12066248	17	2.2	17	90	9	58	18	0	0	81	0.70
12066281--12066369	8	11.5	8	71	21	57	32	6	0	60	1.23
12066236--12066334	41	2.3	44	80	14	109	36	5	0	58	1.20
12066297--12066362	31	2.2	30	86	10	98	31	4	0	63	1.14
12066301--12066370	14	5.2	14	70	16	58	32	5	0	61	1.20
12066330--12066386	22	2.5	22	91	5	87	33	5	0	61	1.18
12067166--12067219	21	2.4	23	76	14	60	22	27	14	35	1.93
12067306--12067347	22	2.0	22	90	4	68	16	4	0	78	0.91
12067306--12067349	23	2.0	22	86	4	61	15	4	0	79	0.89
12067307--12067350	18	2.5	17	78	7	52	15	2	0	81	0.78
12067378--12067558	58	3.1	58	92	0	308	44	5	12	38	1.65
12067539--12067596	17	3.4	17	71	20	57	51	8	5	34	1.55
12067461--12067652	94	2.1	94	93	1	332	43	7	10	37	1.69
12067525--12067594	35	2.0	35	100	0	140	45	11	5	37	1.64
12067560--12067803	59	4.2	59	92	2	384	41	7	12	38	1.71
12067409--12067709	152	2.0	151	94	0	530	42	7	11	38	1.69
12067560--12067803	117	2.1	118	91	2	393	41	7	12	38	1.71
12067377--12067771	210	1.9	211	92	1	668	43	6	12	37	1.68
12072953--12073542	295	2.0	296	90	1	925	40	15	19	24	1.91
12078365--12078434	22	3.3	22	78	13	83	74	0	15	10	1.07
12078364--12078416	12	4.5	12	77	11	56	77	0	13	9	0.99
12078394--12078427	18	1.9	18	88	5	52	76	0	17	5	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12079418--12079743	41	7.8	41	83	4	332	27	16	19	37	1.92
12079418--12079684	125	2.2	124	86	1	356	28	16	18	36	1.93
12079774--12079811	20	1.9	20	89	10	60	84	2	13	0	0.73
12079959--12079988	13	2.2	14	94	5	53	16	0	0	83	0.65
12079956--12080203	4	63.5	4	66	17	62	32	3	0	63	1.12
12079970--12080205	28	8.7	28	79	14	255	33	4	0	62	1.15
12080025--12080205	14	12.9	14	72	10	129	32	4	0	62	1.15
12080534--12080600	31	2.2	31	83	2	82	25	11	14	47	1.79
12081094--12081133	5	8.4	5	83	10	57	17	2	0	80	0.83
12081097--12081135	9	4.2	9	80	6	51	15	2	0	82	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129