genome.fa.s13.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  4  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573905--574132	127	1.8	126	80	4	280	35	9	9	44	1.70
574664--574716	20	2.6	20	87	3	70	56	11	5	26	1.56
574685--580091	181	30.3	181	76	6	3996	40	8	10	41	1.69
574694--580001	361	14.8	359	75	8	3732	40	8	10	41	1.69
580022--580159	67	2.0	68	84	1	179	45	7	10	36	1.67
580184--580678	181	2.8	179	79	8	490	38	9	9	42	1.69
580887--583851	181	16.7	180	76	8	2108	39	7	10	41	1.68
580403--581277	480	1.8	479	83	6	1171	38	8	10	42	1.70
581645--581960	168	1.9	169	84	2	429	38	8	11	41	1.72
581830--583510	718	2.3	713	80	4	1835	40	8	10	40	1.70
580897--595583	899	16.4	892	69	13	5130	40	8	9	41	1.69
583859--586474	181	14.6	176	74	9	1659	40	9	9	40	1.70
583867--586452	358	7.2	355	73	8	1701	39	9	9	41	1.70
583888--586450	540	4.8	531	77	8	1980	40	9	9	40	1.70
586480--586506	14	1.9	14	100	0	54	25	0	0	74	0.83
586495--592041	181	30.9	179	74	9	3406	39	8	9	41	1.69
586550--592041	180	30.6	178	73	9	1265	40	8	9	41	1.69
587665--587715	18	2.8	20	72	27	60	41	3	13	41	1.63
586495--595526	900	10.1	881	73	10	3423	40	8	9	41	1.69
591330--591378	25	2.0	23	84	7	62	38	4	2	55	1.31
592118--595666	181	19.7	181	77	5	2779	40	8	9	41	1.68
596238--598309	181	11.6	177	74	9	1178	41	11	8	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596238--600624	358	12.3	353	73	10	1993	42	10	8	38	1.70
597816--597848	18	1.9	17	88	11	50	42	6	3	48	1.43
598377--600624	181	12.6	181	75	7	1392	42	10	8	38	1.70
598417--600613	355	6.1	354	75	8	1357	42	10	8	38	1.69
598530--600352	531	3.4	527	77	7	1505	42	10	8	38	1.70
600036--600612	174	3.2	173	77	7	460	42	8	7	41	1.64
600656--600995	182	1.9	180	84	4	452	42	7	10	40	1.66
600917--600964	16	2.7	18	75	12	55	45	8	8	37	1.64
601093--603548	181	13.7	181	73	7	1372	40	8	9	40	1.70
602389--603550	180	6.5	177	73	8	541	38	8	10	41	1.71
603431--603693	145	1.8	146	85	4	379	38	7	9	44	1.67
603559--604103	174	3.1	178	81	5	584	39	8	9	41	1.69
603873--603905	17	2.0	17	88	5	50	48	0	12	39	1.40
603103--604048	500	1.9	498	81	6	1151	39	8	9	42	1.68
603657--604581	481	1.9	474	81	5	1087	41	9	10	38	1.73
604125--605618	180	8.3	180	73	7	961	39	8	10	40	1.71
604152--605413	537	2.3	538	78	8	1173	39	8	10	41	1.71
604423--605458	540	1.9	538	79	8	1162	39	8	10	41	1.69
604423--605599	540	2.2	535	78	8	1153	39	8	10	41	1.69
605546--605675	68	1.9	68	92	1	217	40	6	13	38	1.72
605814--605855	19	2.1	21	86	8	61	47	9	9	33	1.68
605741--607928	181	12.2	180	76	7	1473	38	8	9	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605614--607864	539	4.2	540	77	7	1942	39	8	9	42	1.69
605614--607928	360	6.4	361	76	6	1699	38	8	9	42	1.69
607794--608086	146	2.0	146	90	1	462	39	11	12	35	1.81
608410--608441	15	2.1	15	94	0	55	40	6	0	53	1.26
609079--611996	182	16.5	178	71	13	549	39	8	10	41	1.70
609805--613008	177	18.1	175	71	11	1191	39	8	9	42	1.69
609998--611019	523	1.9	526	82	5	1282	39	9	9	42	1.68
610714--611993	181	7.2	178	74	9	567	40	8	10	41	1.69
610695--611655	361	2.7	359	77	6	826	40	8	9	41	1.68
610779--612987	358	6.2	350	72	12	1154	39	8	10	41	1.69
612122--613008	179	5.0	178	73	9	590	38	8	9	42	1.69
613020--613489	180	2.6	177	79	7	470	41	8	10	39	1.68
613234--613776	286	1.9	285	82	3	680	42	8	11	37	1.71
613519--615419	181	10.4	180	76	8	1500	40	8	10	40	1.70
614281--614639	193	1.9	189	80	4	416	39	7	9	43	1.65
613508--615425	551	3.5	539	76	10	1395	40	8	10	40	1.70
615006--615038	16	2.0	17	88	5	50	48	3	9	39	1.50
617501--617565	34	2.0	33	82	8	80	29	12	10	47	1.75
617352--626439	350	25.4	360	71	11	1252	41	10	9	39	1.71
618034--618076	20	2.2	20	91	0	68	44	16	11	27	1.82
617012--636676	181	109.2	180	69	12	6122	40	10	9	39	1.71
616980--636677	361	55.2	347	70	12	6079	40	10	9	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617012--636675	711	27.6	711	71	11	6029	40	10	9	39	1.71
617012--636554	530	36.5	525	70	12	4411	41	10	9	39	1.71
625578--626677	180	6.1	177	74	10	658	40	11	9	38	1.73
630007--636707	180	37.5	179	74	9	4031	41	10	8	40	1.70
633756--634079	170	1.9	168	83	9	417	41	9	8	40	1.68
626792--637944	361	31.0	361	72	9	6168	41	10	8	39	1.70
627511--636707	717	12.9	712	71	11	1750	40	10	9	39	1.70
636887--637944	181	5.9	181	76	8	866	41	9	8	40	1.67
636887--637876	359	2.7	359	79	8	1060	41	9	8	40	1.66
637969--638001	16	2.1	16	88	11	50	51	6	9	33	1.58
638011--638567	178	3.1	180	78	5	468	41	9	9	40	1.69
639639--639671	18	1.9	17	88	11	50	42	6	3	48	1.43
637990--648732	719	15.1	718	75	8	7249	41	9	8	40	1.68
638575--648061	181	53.0	180	72	9	2984	41	9	8	40	1.68
642125--642157	18	1.9	17	88	11	50	42	6	3	48	1.43
641399--648069	181	37.1	181	75	7	4282	41	9	8	40	1.68
646608--646949	168	2.0	169	80	8	378	42	9	6	41	1.62
647331--647363	18	1.9	17	88	11	50	39	6	6	48	1.53
648750--649880	181	6.3	180	76	7	833	40	9	9	40	1.71
648871--649819	355	2.6	359	78	6	900	40	9	9	39	1.71
648882--649925	536	1.9	535	79	6	1169	39	10	9	40	1.72
650541--652976	181	13.6	180	75	8	1700	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650541--652973	902	2.7	896	84	5	2663	40	8	9	41	1.68
652910--653194	145	2.0	146	90	1	457	40	12	11	34	1.80
653054--654100	180	5.8	179	76	8	852	40	8	10	40	1.70
653335--653676	186	1.8	187	86	5	494	40	7	11	40	1.69
653216--654054	366	2.3	358	79	6	845	41	7	10	40	1.69
653960--654255	155	1.9	155	81	4	357	41	6	11	41	1.65
654164--654561	180	2.2	180	78	8	432	41	9	10	38	1.72
654694--655574	181	4.9	179	77	4	596	38	7	10	42	1.69
655755--656134	182	2.1	180	81	4	426	43	7	10	38	1.66
655635--656565	180	5.2	179	76	6	634	40	7	11	40	1.68
656390--656422	18	1.9	17	88	11	50	48	3	6	42	1.43
657297--661822	181	25.2	179	75	7	2897	41	8	9	40	1.68
657311--661822	539	8.4	534	76	8	3187	41	8	9	40	1.68
658598--658645	18	2.7	18	81	12	55	47	0	10	41	1.37
660921--660974	18	3.1	18	76	13	58	46	11	7	35	1.67
662709--662752	14	3.0	14	81	12	52	79	2	2	15	0.93
662714--662782	20	3.4	18	77	15	57	75	2	2	18	1.06
664261--664476	114	1.9	114	80	1	254	36	12	25	26	1.91
665081--665295	114	1.9	113	79	2	245	37	11	28	22	1.89
666003--666049	15	3.3	14	80	11	51	2	14	2	80	0.89
666003--666049	7	6.6	7	81	11	51	2	14	2	80	0.89
666383--666420	18	2.2	18	95	4	69	0	5	2	92	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670102--670147	19	2.3	21	85	7	60	73	2	2	21	1.04
670136--670160	13	1.9	13	100	0	50	64	8	4	24	1.38
671278--671423	51	2.9	52	87	5	219	39	17	10	33	1.83
671484--674828	179	18.8	180	76	8	2361	40	8	9	42	1.67
671484--674828	359	9.4	360	76	8	2365	40	8	9	42	1.67
673875--674180	167	1.8	168	85	4	431	40	6	9	43	1.63
674604--674639	17	2.1	17	94	0	63	33	0	2	63	1.08
674867--687187	181	67.9	180	70	12	3954	40	8	10	41	1.69
674867--687187	363	34.0	359	70	12	4608	40	8	10	41	1.69
679887--680321	182	2.4	179	73	11	298	37	8	11	42	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129