genome.fa.s13.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  81  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14955277--14955313	11	3.6	11	79	20	53	45	0	0	54	1.00
14955441--14955498	20	2.9	21	77	12	59	46	0	1	51	1.11
14955708--14955739	16	1.9	17	93	6	57	50	6	3	40	1.43
14955811--14955849	14	2.8	13	82	14	51	53	0	2	43	1.14
14956036--14956102	15	4.7	15	73	21	56	47	1	0	50	1.10
14956170--14956222	19	2.6	21	80	20	67	60	0	0	39	0.97
14956307--14956391	24	3.6	23	76	22	70	49	1	2	47	1.22
14956342--14956388	23	2.0	24	84	16	62	48	2	0	48	1.13
14956674--14956715	19	2.3	18	91	4	66	45	0	2	52	1.13
14956672--14956719	16	2.9	16	77	19	53	45	0	2	52	1.12
14957621--14957719	28	3.5	28	77	13	89	49	4	2	44	1.32
14957929--14957960	12	2.7	12	90	0	55	59	0	0	40	0.97
14957953--14958012	17	3.7	17	78	6	54	38	3	0	58	1.15
14958115--14958153	10	3.7	10	86	6	51	46	0	0	53	1.00
14958564--14958616	17	2.8	20	77	16	67	50	0	1	47	1.12
14958563--14958632	20	3.7	20	75	9	65	50	0	2	47	1.16
14958956--14959004	12	4.2	12	75	17	50	57	0	0	42	0.99
14958957--14959011	14	3.9	14	78	19	51	54	0	0	45	0.99
14959083--14959169	16	5.2	16	77	14	70	45	2	1	50	1.21
14959236--14959270	17	2.2	17	90	10	56	51	2	0	45	1.16
14959257--14959331	38	2.0	38	82	10	91	42	1	4	52	1.28
14959263--14959331	37	1.9	34	85	8	84	42	0	4	53	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14959307--14959363	23	2.5	23	76	18	64	36	1	3	57	1.26
14959582--14959655	24	3.1	24	81	11	82	47	2	2	47	1.30
14959588--14959716	46	2.8	45	77	15	115	49	2	1	46	1.23
14960224--14960312	22	3.8	24	77	17	75	48	2	1	48	1.21
14960296--14960362	17	4.0	15	72	22	53	47	0	1	50	1.10
14960287--14960358	24	2.9	24	78	15	60	47	1	1	50	1.18
14963830--14964258	182	2.4	180	79	6	460	36	7	10	46	1.66
14965428--14965466	6	6.7	6	82	5	53	46	2	2	48	1.29
14965427--14965466	17	2.3	17	86	4	53	45	2	2	50	1.28
14965883--14966506	182	3.5	181	87	4	764	39	7	11	41	1.69
14965883--14966580	182	3.9	182	85	3	754	39	7	11	41	1.69
14967039--14967086	14	3.6	14	78	13	57	66	4	0	29	1.10
14967042--14967102	26	2.3	27	83	11	81	65	3	1	29	1.18
14967665--14967732	30	2.3	30	79	5	75	47	0	1	51	1.09
14967665--14967732	15	4.5	16	68	18	56	47	0	1	51	1.09
14967644--14967740	38	2.6	38	74	12	92	47	0	1	51	1.07
14968201--14968251	21	2.5	21	96	3	95	50	0	0	49	1.00
14969127--14969163	17	2.3	16	90	9	58	48	0	5	45	1.25
14969227--14969264	10	3.7	10	86	13	51	55	0	0	44	0.99
14969598--14969659	20	3.3	20	67	24	55	53	0	4	41	1.22
14969941--14969980	20	2.0	20	85	9	55	42	5	0	52	1.23
14970288--14970331	18	2.4	18	92	0	70	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14971073--14971134	31	2.0	31	81	12	74	43	6	0	50	1.28
14971778--14971806	7	4.1	7	100	0	58	44	0	0	55	0.99
14971833--14971872	21	2.0	21	85	14	57	50	0	2	47	1.14
14972585--14972673	29	2.9	29	70	21	74	56	1	0	42	1.06
14972574--14972638	18	3.4	19	75	12	62	55	0	0	44	0.99
14972654--14972697	19	2.4	18	82	14	54	61	0	2	36	1.09
14972711--14972762	21	2.4	21	83	3	59	38	0	0	61	0.96
14972731--14972811	37	2.1	40	84	6	105	43	3	0	53	1.18
14972851--14972891	21	2.0	21	85	0	55	58	0	0	41	0.98
14973205--14973283	14	5.6	14	74	17	56	48	0	1	50	1.08
14973253--14973293	18	2.1	18	86	13	55	46	0	2	51	1.14
14973615--14973662	23	2.0	24	88	11	73	47	4	4	43	1.41
14973752--14973786	18	2.0	18	88	5	54	57	0	0	42	0.99
14974648--14974697	23	2.1	25	85	7	68	52	0	2	46	1.12
14974768--14974805	19	1.9	19	89	5	58	44	5	2	47	1.39
14974970--14975054	6	13.0	6	74	17	55	52	1	0	45	1.08
14974978--14975030	19	2.7	20	82	8	65	54	1	0	43	1.11
14975001--14975056	20	2.8	21	79	12	57	57	0	0	42	0.99
14974976--14975092	14	8.6	14	69	20	56	53	0	0	45	1.06
14975461--14976247	180	4.4	180	72	10	523	42	9	8	39	1.68
14975494--14976158	359	1.9	360	79	7	780	44	9	8	38	1.67
14975512--14976272	182	4.2	182	74	6	607	43	9	8	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14976596--14976641	23	2.0	22	84	16	58	34	2	8	54	1.43
14976552--14976985	181	2.4	182	81	3	518	41	7	7	43	1.61
14976652--14977248	324	1.8	324	83	5	796	43	8	8	40	1.64
14977956--14979027	181	6.0	181	80	5	1059	42	9	7	40	1.66
14978394--14978448	18	3.1	19	77	17	64	38	9	5	47	1.58
14978394--14978441	17	2.8	17	81	12	53	39	8	4	47	1.53
14977935--14979017	540	2.0	536	82	3	1300	42	9	7	40	1.67
14979106--14979139	14	2.5	14	90	4	52	41	5	0	52	1.25
14979232--14979348	13	8.8	13	70	20	57	47	1	0	49	1.17
14979219--14979280	16	3.9	16	71	22	51	40	1	1	56	1.19
14979252--14979314	15	4.1	15	80	8	54	50	0	1	47	1.10
14980044--14980113	25	2.8	26	81	14	76	51	2	0	45	1.16
14980050--14980114	13	5.3	12	74	15	53	52	3	0	44	1.16
14980443--14980510	22	3.2	21	78	12	59	55	1	0	42	1.08
14980476--14980556	15	5.3	15	70	20	53	50	2	0	46	1.14
14980509--14980556	19	2.6	18	83	9	53	47	2	0	50	1.12
14980867--14980908	7	6.1	7	83	5	50	21	0	0	78	0.75
14983491--14983788	58	5.0	59	75	12	259	44	5	12	37	1.66
14983503--14983788	122	2.4	116	79	10	310	43	5	12	37	1.68
14984917--14984969	21	2.5	21	96	0	97	35	16	7	39	1.78
14987699--14987738	17	2.4	16	84	15	55	80	0	12	7	0.91
14987700--14987745	13	3.2	14	82	17	51	78	0	15	6	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14987713--14987756	23	1.9	23	86	9	63	77	0	18	4	0.94
14987710--14987766	23	2.5	23	73	21	57	73	0	19	7	1.05
14989618--14989807	42	4.6	41	88	2	265	24	16	23	35	1.95
14989590--14989836	41	6.0	41	84	6	281	23	15	23	37	1.93
14989596--14989811	83	2.6	83	88	5	296	24	15	21	38	1.92
14992915--14993039	18	6.9	18	73	13	114	27	4	36	32	1.78
14992993--14993035	21	2.0	21	95	0	77	27	2	44	25	1.66
14996816--14996864	25	1.9	26	91	4	82	40	10	2	46	1.49
14997087--14997123	20	1.9	20	88	5	58	56	5	2	35	1.36
14997360--14997391	13	2.5	13	100	0	64	6	62	0	31	1.20
14997373--14997459	40	2.2	40	87	2	122	19	63	1	16	1.38
14998551--14998596	24	1.9	24	81	0	56	15	0	6	78	0.95
14998667--14998824	63	2.6	62	79	11	186	41	10	15	33	1.80
14999689--14999727	18	2.2	18	86	9	53	58	0	2	38	1.12
15000185--15000225	18	2.4	17	87	4	55	43	0	4	51	1.23
15000772--15000859	46	2.0	44	82	8	106	27	12	11	48	1.75
15001455--15001517	30	2.1	31	85	8	85	55	1	0	42	1.09
15002392--15002443	21	2.4	23	81	12	65	46	1	0	51	1.12
15002855--15002899	24	2.0	22	83	16	56	57	2	2	37	1.23
15003783--15003813	14	2.3	13	94	5	53	51	0	0	48	1.00
15004124--15004189	7	8.9	7	73	18	53	39	0	3	57	1.14
15004288--15004342	21	2.4	22	82	14	67	54	1	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004307--15004352	24	1.9	24	86	0	65	52	4	2	41	1.33
15004589--15005164	180	3.2	176	80	7	541	39	7	9	43	1.65
15005212--15005240	9	3.3	9	95	4	51	58	0	0	41	0.98
15005567--15005614	22	2.2	22	85	7	62	41	0	0	58	0.98
15005587--15005613	8	3.4	8	100	0	54	37	0	0	62	0.95
15006498--15006562	21	3.1	21	75	0	67	30	24	24	20	1.98
15011251--15011298	21	2.3	21	88	0	69	31	27	20	20	1.98
15012064--15012147	12	6.9	12	76	15	66	47	1	0	51	1.08
15012074--15012147	22	3.2	23	75	19	66	47	1	0	51	1.09
15012066--15012163	46	2.1	47	83	10	123	52	1	0	46	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129