genome.fa.s13.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  69  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13120336--13120373	20	1.9	20	88	0	58	15	10	0	73	1.09
13120820--13120899	30	2.6	31	82	11	94	11	3	3	81	0.95
13127948--13128076	64	2.0	66	83	8	167	31	20	6	42	1.76
13135392--13135421	3	10.0	3	100	0	60	33	0	0	66	0.92
13135451--13135493	13	3.1	14	83	6	52	0	30	0	69	0.88
13135719--13135763	19	2.3	20	88	3	65	55	6	13	24	1.62
13135718--13135764	20	2.3	21	82	10	62	57	6	12	23	1.58
13135718--13135770	19	2.7	19	75	16	54	52	7	11	28	1.64
13137194--13137231	19	2.0	20	84	5	51	78	2	2	15	0.97
13144092--13144146	21	2.7	21	94	2	94	52	5	9	32	1.56
13148588--13149062	49	9.5	50	76	11	332	27	12	21	39	1.88
13148579--13149079	153	3.3	147	80	8	501	27	11	21	38	1.89
13148767--13149033	104	2.6	104	89	2	403	26	11	21	40	1.87
13148639--13149063	104	4.2	103	80	7	385	27	12	21	39	1.88
13149250--13149279	3	10.0	3	100	0	60	33	0	0	66	0.92
13149280--13149322	15	2.9	15	86	10	54	4	9	2	83	0.87
13149276--13149324	19	2.6	18	81	15	55	6	8	2	83	0.87
13149285--13149351	9	6.9	9	73	20	55	1	16	1	80	0.86
13149282--13149364	15	5.7	14	70	17	53	1	16	2	79	0.90
13150599--13150634	19	1.9	19	88	5	56	63	0	2	33	1.08
13150803--13150833	11	2.7	12	90	10	55	70	0	0	29	0.87
13155950--13155992	16	2.6	16	88	3	59	81	2	2	13	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13156437--13156481	20	2.2	20	84	0	63	77	2	6	13	1.05
13156559--13156588	16	1.9	15	93	6	51	83	3	0	13	0.77
13156645--13156677	9	3.8	9	88	8	50	84	0	0	15	0.61
13165068--13165132	16	3.8	16	73	16	51	81	0	10	7	0.87
13165295--13165354	12	4.9	12	75	16	61	75	0	13	11	1.06
13165301--13165355	25	2.2	26	90	6	87	76	0	12	10	1.02
13165313--13165364	24	2.1	25	85	3	70	75	0	15	9	1.05
13167748--13167787	20	2.0	20	85	0	53	72	0	27	0	0.85
13167730--13167776	22	2.1	22	84	4	58	74	0	25	0	0.82
13167759--13167801	20	2.2	20	86	0	59	65	0	34	0	0.93
13171738--13171807	20	3.7	18	83	11	77	11	4	2	81	0.94
13171739--13171807	27	2.6	26	88	4	93	11	4	2	81	0.95
13171753--13171813	26	2.4	24	81	10	68	11	3	4	80	0.99
13178848--13178978	66	2.0	66	86	5	185	31	19	6	42	1.76
13186285--13186314	3	10.0	3	100	0	60	33	0	0	66	0.92
13186321--13186378	12	4.9	11	79	12	53	3	17	0	79	0.87
13186338--13186381	19	2.3	20	84	11	65	0	22	0	77	0.77
13186354--13186397	13	3.1	14	83	6	54	0	29	0	70	0.88
13186623--13186667	19	2.3	20	88	3	65	55	6	13	24	1.62
13186622--13186668	20	2.3	21	82	10	62	57	6	12	23	1.58
13186622--13186674	19	2.7	19	75	16	54	52	7	11	28	1.64
13188088--13188125	19	2.0	20	84	5	51	78	2	2	15	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13188552--13188595	18	2.2	21	84	11	58	86	6	2	4	0.77
13199270--13199312	22	2.0	22	85	0	59	53	2	18	25	1.56
13199587--13200077	49	9.8	49	77	8	364	27	12	21	39	1.89
13199576--13200077	153	3.3	147	81	8	528	27	11	21	38	1.89
13199637--13200031	104	3.9	104	84	6	418	26	12	22	39	1.89
13200248--13200274	3	9.0	3	100	0	54	33	0	0	66	0.92
13200282--13200367	9	8.9	9	72	19	50	1	17	2	79	0.91
13200322--13200371	15	3.5	15	81	5	50	0	24	2	74	0.93
13200293--13200353	26	2.5	23	84	10	77	1	19	0	78	0.83
13200292--13200340	11	4.4	11	87	10	64	2	20	0	77	0.87
13200298--13200368	24	2.9	24	80	12	81	0	21	1	77	0.85
13201598--13201633	19	1.9	19	88	5	56	63	0	2	33	1.08
13201804--13201835	12	2.7	12	90	0	55	71	0	0	28	0.86
13211099--13211171	12	5.9	12	79	6	65	43	23	9	23	1.83
13211091--13211167	25	3.1	25	80	0	100	44	22	10	23	1.83
13211962--13212581	317	2.0	318	85	3	847	39	13	10	36	1.79
13212722--13212951	127	1.8	128	79	2	275	42	11	12	33	1.79
13220853--13220911	30	2.0	30	96	0	109	32	22	13	32	1.92
13222872--13222899	2	14.0	2	100	0	56	50	0	0	50	1.00
13226211--13226293	21	4.0	21	93	3	134	55	20	8	15	1.66
13228334--13228391	30	2.0	28	83	12	73	37	8	22	31	1.84
13231253--13231414	79	2.0	82	83	13	248	41	17	8	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13234200--13234271	31	2.3	31	97	0	135	40	18	19	22	1.92
13236095--13236146	25	2.1	25	100	0	104	44	13	19	23	1.86
13238260--13238317	24	2.4	25	85	2	73	34	0	10	55	1.34
13238625--13238672	24	2.0	23	88	4	69	62	4	0	33	1.14
13239522--13239598	24	3.0	27	75	14	72	32	2	1	63	1.16
13239552--13239604	24	2.2	24	96	0	97	35	5	3	54	1.42
13242531--13242565	1	35.0	1	88	0	52	94	2	0	2	0.37
13242944--13243459	255	2.0	255	97	0	987	41	12	16	30	1.85
13247471--13248675	97	12.5	96	79	8	1058	30	12	21	35	1.90
13247474--13248670	49	24.8	49	81	5	1183	30	12	21	35	1.91
13248690--13248738	24	2.1	23	84	3	62	79	4	4	12	1.01
13248878--13248926	3	16.3	3	82	0	62	57	0	0	42	0.99
13248878--13248926	12	4.1	12	91	0	80	57	0	0	42	0.99
13250018--13250073	16	3.2	17	73	12	51	64	1	3	30	1.21
13250244--13250294	19	2.6	20	78	12	61	68	0	1	29	1.00
13251458--13251509	27	1.9	27	100	0	104	57	13	11	17	1.64
13253368--13253413	21	2.2	20	84	3	56	17	4	6	71	1.24
13253607--13253663	27	2.1	28	86	3	80	57	1	0	40	1.09
13253953--13253995	17	2.5	18	81	7	54	37	2	6	53	1.41
13255469--13255517	20	2.5	20	93	0	80	40	10	6	42	1.63
13265689--13265736	15	3.3	14	80	8	51	81	2	10	6	0.95
13268140--13268197	22	2.6	22	88	0	89	15	12	18	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13268656--13268818	86	1.9	86	89	0	254	42	9	10	37	1.71
13269064--13269095	6	5.7	6	96	3	50	90	0	9	0	0.45
13269844--13269885	2	21.0	2	100	0	84	50	0	0	50	1.00
13273680--13273963	62	4.5	63	73	11	190	39	13	14	33	1.84
13273735--13273952	63	3.5	60	71	11	170	36	13	15	34	1.87
13273675--13273963	126	2.3	126	81	5	336	39	13	13	33	1.84
13274051--13274122	35	2.1	35	86	5	101	33	6	18	41	1.77
13274521--13274952	216	2.0	216	98	0	828	40	11	14	33	1.82
13277516--13277590	25	3.0	25	80	0	96	49	28	5	17	1.68
13277516--13277588	13	5.7	13	70	8	51	49	27	5	17	1.69
13277868--13279767	367	5.2	365	85	4	2352	41	11	12	34	1.79
13277868--13279767	366	5.2	366	84	6	2314	41	11	12	34	1.79
13277868--13279764	733	2.6	731	85	5	2533	41	11	12	34	1.79
13279873--13280167	62	4.6	63	70	12	185	39	10	15	34	1.82
13279467--13280038	306	1.9	306	88	0	867	41	10	12	34	1.78
13279844--13280147	128	2.4	127	85	7	393	39	9	15	35	1.80
13279454--13280106	306	2.1	304	82	4	812	41	10	13	34	1.78
13279971--13281298	365	3.6	363	83	6	1601	41	11	12	34	1.79
13281011--13281571	305	1.8	305	88	0	863	41	10	13	34	1.79
13281407--13281609	65	3.2	63	71	10	189	39	8	16	34	1.80
13281378--13281680	127	2.4	127	86	6	409	39	9	14	35	1.79
13282506--13283449	305	3.1	304	87	2	1304	39	11	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13289249--13289507	140	1.9	140	83	3	342	30	8	15	44	1.77
13290220--13293469	671	4.8	675	95	1	5736	35	11	11	41	1.77
13309472--13309501	3	10.0	3	100	0	60	33	0	0	66	0.92
13310436--13310468	16	2.1	16	94	0	57	75	0	3	21	0.93
13318835--13319044	65	3.3	64	76	7	210	23	19	10	46	1.81
13319366--13319457	9	10.2	9	80	0	58	31	11	2	54	1.49
13319424--13319457	3	11.3	3	100	0	68	32	0	0	67	0.91
13319498--13319596	51	1.9	52	83	2	128	43	8	16	32	1.77
13324498--13324564	7	9.6	7	88	0	98	43	0	26	29	1.55
13328460--13328500	15	2.6	16	88	3	57	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129