genome.fa.s13.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  116  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20825674--20825746	30	2.4	30	79	4	85	53	5	10	30	1.58
20825730--20825755	7	3.7	7	100	0	52	69	0	0	30	0.89
20830834--20830898	30	2.2	30	82	0	76	33	4	6	55	1.45
20830857--20830920	30	2.1	30	85	0	83	37	10	1	50	1.47
20835024--20835064	8	5.2	8	85	2	57	58	0	0	41	0.98
20840494--20840560	31	2.2	31	94	0	116	28	13	16	41	1.86
20840921--20840945	10	2.5	10	100	0	50	36	0	0	64	0.94
20841076--20841110	17	2.1	16	89	5	52	28	0	0	71	0.86
20841928--20841954	3	9.0	3	100	0	54	66	0	0	33	0.92
20842903--20842957	22	2.3	25	90	9	89	54	0	0	45	0.99
20842941--20842985	6	8.3	6	81	18	55	73	0	0	26	0.84
20842941--20842986	15	2.9	16	90	6	76	73	0	0	26	0.83
20842941--20843008	31	2.1	33	89	5	104	70	0	0	29	0.87
20842941--20842993	13	3.8	13	76	23	54	71	0	0	28	0.86
20842941--20842994	10	5.0	11	77	22	53	72	0	0	27	0.85
20842940--20842987	16	3.1	16	87	6	80	70	0	0	29	0.87
20845725--20845765	20	2.0	21	85	4	57	19	2	17	60	1.46
20846360--20846403	19	2.2	20	80	4	54	38	4	9	47	1.56
20846656--20846697	13	3.3	13	80	6	50	19	2	9	69	1.28
20847300--20847350	25	2.0	25	92	0	84	47	5	1	45	1.38
20847938--20847980	19	2.4	19	80	7	54	32	0	2	65	1.06
20848374--20848423	25	1.9	27	84	8	68	62	8	2	28	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20851820--20851851	15	2.1	15	94	0	55	53	9	0	37	1.34
20860849--20860993	52	2.8	52	83	6	186	28	20	5	44	1.74
20863747--20863786	3	13.0	3	94	5	71	65	0	2	32	1.06
20868831--20868886	29	1.9	29	82	7	69	33	8	1	55	1.42
20874968--20875001	13	2.6	13	85	0	50	50	11	8	29	1.69
20875072--20875970	187	4.9	185	80	9	933	40	10	12	35	1.78
20875630--20875970	170	2.0	169	86	4	472	42	10	11	35	1.76
20875891--20876124	125	1.9	123	82	1	297	39	11	13	35	1.80
20885928--20885974	18	2.3	21	86	13	64	40	4	4	51	1.41
20889510--20889534	11	2.3	11	100	0	50	16	0	0	84	0.63
20897515--20897683	89	1.9	89	85	0	230	21	19	13	45	1.84
20897628--20897746	63	1.9	63	84	3	159	20	19	12	47	1.81
20897672--20897978	89	3.4	89	82	3	350	19	20	13	46	1.83
20897539--20897835	152	2.0	152	87	1	434	21	20	12	45	1.83
20897910--20898042	64	2.1	64	86	0	185	21	21	15	42	1.88
20897821--20898132	153	2.0	153	81	2	358	19	19	15	44	1.86
20897974--20898172	89	2.2	89	79	5	242	19	21	16	42	1.89
20898433--20898543	52	2.1	52	81	3	134	24	27	19	27	1.99
20899554--20899599	14	3.3	14	80	14	51	17	0	0	82	0.67
20899553--20899599	22	2.2	21	85	14	62	19	0	0	80	0.70
20899573--20899631	30	1.9	31	89	3	93	20	3	3	72	1.13
20899679--20899726	24	1.9	26	87	8	73	70	6	6	16	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20899748--20899784	19	1.9	19	88	0	56	59	2	2	35	1.26
20900645--20900761	61	1.9	61	87	3	173	32	2	11	53	1.50
20902265--20902351	46	1.9	45	80	2	102	47	5	17	29	1.71
20904622--20904654	17	1.9	17	93	0	57	78	0	3	18	0.87
20905163--20905201	15	2.4	17	87	12	64	58	0	41	0	0.98
20905163--20905201	16	2.4	16	91	8	62	58	0	41	0	0.98
20905561--20905743	62	3.1	60	85	8	227	46	7	10	36	1.65
20908950--20908981	15	2.1	15	94	0	55	28	25	0	46	1.53
20916193--20916226	14	2.3	15	90	5	52	73	0	8	17	1.08
20916185--20916226	15	2.9	14	85	7	57	76	0	9	14	1.02
20917234--20917325	46	2.0	46	91	4	150	26	10	21	41	1.86
20917227--20917482	41	6.1	41	77	7	230	26	10	18	44	1.82
20917227--20917463	123	1.9	126	82	6	302	26	10	18	44	1.82
20918574--20918924	61	6.0	58	78	10	304	50	7	8	33	1.60
20920812--20921276	230	2.0	233	81	2	553	39	9	5	45	1.60
20923655--20923743	36	2.5	35	80	12	92	21	2	5	70	1.18
20923849--20923890	14	2.9	14	89	3	57	21	0	4	73	1.01
20928353--20928413	26	2.3	27	83	5	72	50	4	9	34	1.57
20931980--20932039	27	2.4	24	77	17	59	36	8	1	53	1.41
20931988--20932041	27	2.0	27	96	0	99	35	12	0	51	1.40
20936114--20936153	20	2.0	20	95	0	71	42	0	10	47	1.37
20939791--20939829	18	2.2	18	85	0	51	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20940734--20941089	194	1.8	193	82	9	458	47	6	10	35	1.64
20945403--20945436	16	2.1	16	88	0	50	70	0	17	11	1.16
20946017--20946063	22	2.2	21	82	17	53	44	4	14	36	1.65
20946069--20946197	63	2.0	63	86	2	179	32	11	27	27	1.92
20946069--20946220	63	2.4	63	83	2	171	32	11	27	28	1.91
20947065--20947155	42	2.2	42	82	4	112	25	13	21	39	1.90
20947747--20947781	12	2.6	14	82	17	56	34	0	5	60	1.21
20947753--20947781	12	2.4	12	100	0	58	27	0	6	65	1.18
20948321--20948361	12	3.5	12	78	15	50	24	0	7	68	1.15
20948299--20948362	21	3.0	20	80	13	67	18	0	7	73	1.07
20948799--20948851	27	2.0	25	85	7	70	43	5	9	41	1.61
20948927--20949113	59	3.0	59	78	10	196	58	5	11	24	1.55
20952038--20952105	18	3.8	18	75	22	72	33	25	17	23	1.96
20951888--20952318	233	1.8	233	96	0	808	36	12	25	25	1.91
20955634--20955732	34	3.0	34	85	11	161	36	10	17	36	1.83
20955634--20955729	30	3.1	30	90	6	147	37	9	17	35	1.82
20959659--20959706	11	4.5	11	74	10	55	27	2	14	56	1.50
20959667--20959704	20	2.0	20	89	5	60	34	2	13	50	1.55
20960221--20960283	23	2.9	22	77	20	69	15	0	6	77	0.96
20960237--20960263	12	2.2	12	100	0	54	14	0	0	85	0.61
20960234--20960275	20	2.1	20	86	8	59	19	0	2	78	0.86
20960299--20960323	13	1.9	13	100	0	50	88	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20960298--20960665	195	1.9	191	83	9	471	48	6	10	34	1.64
20965583--20965629	22	2.2	21	82	17	53	46	4	12	36	1.62
20965621--20965741	63	1.9	63	89	0	188	34	13	24	27	1.93
20965621--20965763	63	2.3	63	85	0	178	34	11	24	28	1.91
20966633--20966720	42	2.1	42	82	4	106	22	14	21	40	1.90
20967643--20967683	12	3.5	12	78	15	50	24	0	7	68	1.15
20968258--20968435	60	2.9	59	75	14	164	55	6	12	24	1.61
20970889--20970936	18	2.7	18	83	0	60	56	0	0	43	0.99
20972450--20972547	41	2.3	42	77	11	101	38	10	9	41	1.71
20972696--20972749	4	13.0	4	82	5	63	70	1	5	22	1.18
20973692--20973732	18	2.3	18	83	8	57	41	21	7	29	1.80
20975826--20975879	27	2.0	28	85	3	74	70	0	20	9	1.14
20976461--20976507	22	2.2	21	82	17	53	44	4	14	36	1.65
20976513--20976641	63	2.0	63	86	2	179	32	11	27	27	1.92
20976513--20976664	63	2.4	63	83	2	171	32	11	27	28	1.91
20977507--20977595	41	2.2	41	81	4	108	25	13	22	38	1.91
20978751--20978791	12	3.5	12	78	15	50	24	0	7	68	1.15
20978983--20979011	12	2.3	13	94	5	51	89	10	0	0	0.48
20979232--20979285	27	2.0	27	85	3	74	44	5	9	40	1.60
20980530--20980605	30	2.5	31	76	4	82	35	7	9	47	1.65
20982002--20982048	18	2.7	18	83	3	60	55	0	0	44	0.99
20982018--20982061	15	2.8	17	86	10	58	56	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20983558--20983655	41	2.3	42	77	11	101	38	10	9	41	1.71
20983803--20983856	4	13.0	4	82	5	63	70	1	5	22	1.18
20984334--20984419	35	2.5	36	77	12	99	66	17	3	12	1.38
20996149--20996348	60	3.4	59	86	6	282	46	7	14	32	1.71
21000183--21000244	8	7.8	8	79	15	58	74	0	17	8	1.06
21001466--21002039	41	14.1	40	85	9	697	23	17	20	38	1.93
21001466--21002039	82	7.0	81	87	8	785	23	17	20	38	1.93
21002050--21002138	25	3.5	25	83	6	99	82	13	3	1	0.86
21002072--21002129	8	6.9	8	78	9	62	82	15	1	0	0.74
21002071--21002136	34	1.9	34	87	6	98	83	13	1	1	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129