genome.fa.s13.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  51  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10098531--10098892	75	4.8	74	78	10	335	29	12	19	39	1.87
10098570--10098892	112	2.9	111	78	10	304	28	12	19	39	1.88
10098985--10099066	43	1.9	43	87	5	121	28	14	17	40	1.88
10099817--10099870	20	2.8	19	86	5	65	35	5	12	46	1.66
10099896--10100072	21	7.8	24	75	17	157	32	2	10	54	1.48
10099895--10100068	66	2.6	66	82	11	214	32	2	10	54	1.49
10100060--10100084	2	12.5	2	100	0	50	48	0	0	52	1.00
10100280--10100339	18	3.4	18	73	13	70	26	5	15	53	1.62
10100249--10100512	35	7.5	35	87	3	363	28	5	13	52	1.63
10100249--10100512	69	3.8	69	89	3	377	28	5	13	52	1.63
10100271--10100512	104	2.3	104	91	2	387	28	5	14	52	1.63
10100913--10101017	53	1.9	54	88	3	158	46	8	5	39	1.58
10102100--10102135	2	18.0	2	100	0	72	50	0	0	50	1.00
10103832--10103868	12	3.1	12	96	0	65	27	18	16	37	1.92
10103834--10103871	18	2.1	18	85	9	51	23	15	15	44	1.85
10113795--10113829	18	1.9	18	88	0	52	48	0	2	48	1.16
10124457--10124733	43	6.5	43	74	10	239	26	12	12	47	1.78
10124457--10124773	86	3.7	86	76	7	213	26	12	12	47	1.78
10124457--10124780	43	7.7	43	75	9	185	26	13	13	47	1.79
10125741--10125795	4	14.2	4	78	14	62	23	0	0	76	0.79
10126012--10126053	21	2.0	21	81	9	50	52	4	0	42	1.22
10126775--10126815	21	2.0	21	95	0	73	46	19	9	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10131132--10131160	15	1.9	15	100	0	58	65	6	0	27	1.18
10131188--10131214	3	9.0	3	100	0	54	33	0	33	33	1.58
10132679--10132711	8	4.1	8	88	11	50	0	12	12	75	1.04
10132679--10132711	17	2.0	16	94	5	57	0	12	12	75	1.04
10137405--10137476	31	2.4	30	82	13	101	41	5	4	48	1.45
10137503--10137575	29	2.5	30	77	2	85	53	4	8	34	1.50
10146185--10146281	42	2.3	42	83	0	113	21	9	13	55	1.66
10151021--10151473	225	2.0	225	92	1	757	35	13	14	35	1.86
10153115--10153171	13	4.4	14	80	12	59	24	0	29	45	1.53
10153112--10153160	13	3.8	13	86	0	62	28	0	26	44	1.54
10154379--10154455	35	2.2	35	85	0	100	9	9	18	63	1.49
10155033--10155065	7	4.7	7	100	0	66	30	0	12	57	1.35
10155014--10155064	21	2.4	21	83	0	57	29	7	7	54	1.57
10155063--10155099	3	12.3	3	100	0	74	35	0	0	64	0.94
10155479--10155734	36	7.1	36	71	11	118	50	18	16	14	1.79
10155762--10155857	33	2.9	32	80	6	102	29	17	19	33	1.95
10155777--10155982	33	6.3	32	77	4	135	30	13	18	37	1.89
10156262--10156346	34	2.5	34	74	12	95	29	10	16	43	1.81
10156238--10156539	65	4.5	66	73	13	224	32	13	16	37	1.89
10156367--10156676	34	9.3	34	75	8	199	31	16	15	35	1.91
10156233--10156771	133	4.0	135	77	6	445	32	14	16	36	1.89
10156607--10156809	33	6.1	33	71	13	128	34	14	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10157830--10157872	19	2.3	18	84	4	50	4	13	2	79	1.00
10159219--10159260	12	3.4	12	86	3	57	4	19	0	76	0.96
10163305--10163329	12	2.1	12	100	0	50	44	0	0	56	0.99
10165971--10166003	3	11.0	3	93	0	57	36	0	30	33	1.58
10166759--10166832	34	2.2	34	90	4	116	8	16	18	56	1.64
10166679--10166827	82	1.8	80	81	8	185	10	14	18	57	1.64
10167264--10167288	7	3.6	7	100	0	50	32	24	0	44	1.54
10170994--10171027	11	3.1	11	82	0	50	67	26	2	2	1.19
10172305--10172407	29	3.5	28	84	6	100	48	0	0	50	1.07
10172311--10172363	12	4.0	12	75	20	52	52	0	0	47	1.00
10172747--10172777	16	1.9	16	93	0	53	48	3	0	48	1.17
10173000--10173037	2	19.0	2	100	0	76	50	0	0	50	1.00
10173324--10173361	17	2.4	16	86	8	51	57	2	5	34	1.35
10173191--10173422	77	3.0	77	81	9	283	52	4	7	35	1.50
10173924--10173977	19	2.9	19	81	8	58	72	3	5	18	1.20
10186718--10186798	33	2.5	33	81	0	90	16	16	18	49	1.80
10189766--10189808	22	2.0	22	90	9	70	72	2	0	25	0.97
10191010--10191133	42	3.0	42	82	4	126	43	14	13	28	1.83
10194176--10194249	18	4.1	18	94	0	130	31	20	12	36	1.89
10201912--10201942	13	2.3	14	94	5	55	70	12	0	16	1.16
10201911--10201943	7	4.7	7	88	11	50	72	12	0	15	1.12
10204670--10204741	37	2.0	36	91	2	117	31	20	18	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10206941--10206984	21	2.1	21	86	0	61	29	0	4	65	1.12
10207045--10207089	22	2.0	23	82	4	56	42	2	2	53	1.25
10207164--10207205	21	2.0	21	81	9	50	57	7	14	21	1.61
10207871--10207907	10	3.8	10	89	3	58	0	0	8	91	0.41
10212407--10212458	24	2.2	24	89	6	79	57	9	19	13	1.63
10215804--10215851	24	2.0	24	87	4	69	27	6	6	60	1.45
10215964--10216007	18	2.4	18	88	3	61	45	0	2	52	1.13
10218942--10218973	16	2.0	16	100	0	64	37	6	12	43	1.68
10219065--10219125	32	1.9	32	93	0	104	26	8	27	37	1.85
10219277--10219302	2	13.0	2	100	0	52	50	0	0	50	1.00
10220714--10220768	26	2.1	27	83	16	71	27	5	3	63	1.33
10220797--10220865	36	1.9	36	85	5	95	39	10	8	42	1.70
10220880--10220918	8	4.9	8	83	0	51	61	0	0	38	0.96
10222735--10222785	19	2.5	21	78	12	61	29	0	7	62	1.23
10227160--10227199	7	5.7	7	96	0	71	55	12	0	32	1.38
10229534--10229566	12	2.8	12	86	13	50	84	0	15	0	0.61
10229534--10229567	11	3.0	11	91	4	50	85	0	14	0	0.60
10229862--10229897	16	2.2	16	90	9	56	63	0	0	36	0.94
10234590--10234677	46	1.9	46	95	0	158	40	5	9	44	1.60
10235937--10235986	26	1.9	26	84	8	66	42	0	0	58	0.98
10235975--10236034	25	2.5	24	83	5	68	45	3	0	51	1.17
10236847--10236890	22	1.9	22	86	9	61	84	0	9	6	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10236846--10236885	17	2.4	17	91	0	62	82	0	10	7	0.84
10237147--10237200	19	2.8	19	83	8	56	66	0	1	31	1.02
10238953--10238998	18	2.5	19	82	13	60	23	8	21	45	1.80
10239198--10239222	12	2.1	12	100	0	50	44	0	16	40	1.47
10243495--10243536	17	2.3	19	80	8	52	35	7	14	42	1.73
10246787--10246822	19	1.9	19	88	5	56	19	5	8	66	1.38
10247025--10247072	18	2.8	17	84	6	60	70	4	4	20	1.21
10247028--10247062	18	1.9	18	94	0	61	74	0	5	20	1.02
10247239--10247293	26	2.1	26	89	0	83	50	18	14	16	1.77
10249020--10249075	22	2.5	22	82	2	67	32	19	19	28	1.97
10250156--10250184	2	14.5	2	100	0	58	51	0	48	0	1.00
10256941--10256979	7	5.4	7	85	14	53	82	0	15	2	0.79
10256941--10256979	13	2.7	14	88	11	53	82	0	15	2	0.79
10260509--10260563	25	2.2	24	84	6	74	41	14	20	23	1.89
10260517--10260567	25	2.0	25	92	0	84	39	11	19	29	1.87
10262484--10262566	27	3.1	28	82	6	109	21	8	38	31	1.83
10263841--10263910	35	2.0	35	97	0	131	34	12	25	27	1.92
10264433--10264487	25	2.2	24	87	6	83	40	10	20	29	1.86
10264444--10264491	25	1.9	25	95	0	87	39	10	18	31	1.85
10270118--10270356	125	1.9	125	98	0	460	29	21	15	33	1.94
10270332--10270390	29	2.0	29	100	0	118	37	33	13	15	1.86
10277838--10277874	18	2.1	18	100	0	74	37	5	16	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10282068--10282147	34	2.4	34	82	4	90	40	6	11	42	1.66
10282816--10282898	34	2.4	35	80	11	93	36	13	12	38	1.82
10283749--10283806	26	2.3	24	77	11	62	36	17	13	32	1.89
10283781--10283877	34	2.9	33	74	10	97	36	16	9	38	1.81
10287370--10287421	21	2.5	21	90	6	79	50	0	0	50	1.00
10287370--10287421	22	2.5	22	93	6	90	50	0	0	50	1.00
10287394--10287450	30	1.9	30	85	0	78	52	1	0	45	1.11
10287411--10287475	24	2.7	23	75	13	60	60	1	0	38	1.07
10287413--10287481	12	5.8	12	75	14	54	59	1	0	39	1.06
10291479--10291522	17	2.6	17	79	13	54	68	2	2	27	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129