genome.fa.s13.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  53  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10430597--10430648	21	2.5	21	90	0	86	21	7	23	48	1.75
10431002--10431053	24	2.2	24	82	6	61	11	11	0	76	1.01
10432975--10433017	10	4.1	11	79	11	54	46	0	2	51	1.13
10433583--10433671	44	2.0	44	86	0	124	49	16	7	25	1.73
10436336--10436381	18	2.5	18	86	10	58	13	2	39	45	1.55
10437432--10437876	143	3.1	139	73	9	367	42	13	12	31	1.81
10446803--10446843	19	2.0	21	90	9	68	70	9	0	19	1.14
10446776--10446859	35	2.5	36	81	11	99	70	9	1	19	1.21
10446789--10446852	16	4.1	15	73	18	51	70	9	0	20	1.14
10446829--10446879	22	2.3	22	80	6	59	78	5	1	13	1.02
10446914--10446975	29	2.2	29	85	8	83	22	58	4	14	1.56
10447162--10447208	23	2.0	23	91	0	76	72	10	6	10	1.28
10447169--10447210	10	3.8	11	78	9	50	78	4	4	11	1.06
10447255--10447306	21	2.4	21	81	12	61	67	5	11	15	1.40
10449214--10449257	23	2.0	22	86	4	61	81	4	4	9	0.96
10459487--10459528	8	5.4	8	88	2	59	83	0	7	9	0.81
10459501--10459531	7	4.3	7	92	8	53	83	0	3	12	0.75
10459492--10459528	15	2.4	16	95	4	67	83	0	5	10	0.79
10460306--10460932	50	12.8	50	79	7	581	27	12	22	37	1.90
10460259--10460924	243	2.8	242	81	6	757	28	12	22	37	1.90
10460742--10460964	102	2.2	101	80	4	254	27	11	21	39	1.87
10461141--10461178	14	2.7	14	88	8	51	81	2	0	15	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10461182--10461222	19	2.2	19	91	8	66	68	14	2	14	1.32
10461292--10461364	29	2.5	29	80	4	85	19	52	8	20	1.71
10464994--10465027	13	2.4	15	90	9	54	35	0	0	64	0.94
10466235--10466324	31	2.9	31	88	0	135	43	17	5	33	1.73
10466721--10466891	74	2.3	74	79	4	184	47	7	10	35	1.65
10466898--10467039	74	1.9	73	80	8	162	49	9	7	33	1.63
10467335--10468252	464	2.0	466	98	0	1768	35	11	8	43	1.72
10468404--10468433	15	2.0	15	93	0	51	43	6	23	26	1.78
10471036--10471105	33	2.1	34	97	2	133	57	5	21	15	1.59
10471824--10471885	32	1.9	32	84	12	83	54	1	4	38	1.31
10471875--10471930	27	2.0	29	86	6	80	48	7	5	39	1.54
10481564--10481622	31	1.9	31	82	6	75	42	8	16	32	1.79
10491559--10491609	23	2.3	22	87	12	70	52	0	0	47	1.00
10491568--10491601	17	1.9	18	94	5	61	47	0	0	52	1.00
10491595--10491642	18	2.8	17	84	6	62	66	0	0	33	0.92
10492655--10492723	30	2.3	30	85	5	86	42	8	1	47	1.43
10493405--10493513	2	54.5	2	82	0	128	46	3	2	46	1.34
10497325--10497358	15	2.2	16	89	5	52	35	2	0	61	1.11
10497735--10497777	17	2.5	17	80	0	50	51	9	2	37	1.47
10499147--10499190	24	1.9	22	81	9	52	45	2	0	52	1.13
10501445--10501494	6	8.3	6	82	12	59	48	2	0	50	1.12
10501665--10501726	18	3.5	17	78	10	63	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507551--10507612	3	20.3	3	77	21	58	25	0	4	69	1.08
10507667--10507714	18	2.5	20	77	19	57	35	2	2	60	1.20
10508749--10508905	18	8.3	18	65	17	61	16	6	2	74	1.13
10508832--10508906	26	2.9	25	83	13	98	14	6	0	78	0.94
10508832--10508906	18	4.3	17	75	18	66	14	6	0	78	0.94
10508909--10509025	57	2.0	59	91	6	193	47	9	9	33	1.68
10512184--10512230	15	3.1	15	90	3	67	21	23	4	51	1.65
10512189--10512233	15	3.0	15	93	0	72	24	24	2	48	1.62
10514539--10514572	15	2.2	16	89	5	52	50	5	38	5	1.51
10515728--10515752	8	3.1	8	100	0	50	12	0	0	88	0.53
10516240--10516305	24	2.8	23	80	11	73	43	1	0	54	1.09
10516240--10516305	23	2.8	22	77	11	69	43	1	0	54	1.09
10518042--10518294	108	2.3	108	82	1	310	32	13	12	42	1.81
10523970--10524012	22	1.9	23	81	13	54	39	6	9	44	1.64
10524783--10524839	26	2.3	25	78	6	62	63	19	5	12	1.47
10526357--10526385	13	2.2	13	100	0	58	82	0	6	10	0.83
10526700--10527027	179	1.8	179	88	1	496	46	11	11	31	1.75
10528061--10528113	26	2.0	26	82	7	63	43	16	13	26	1.85
10531836--10531889	25	2.2	25	93	0	90	35	9	16	38	1.81
10532084--10532157	32	2.3	32	95	0	139	18	16	32	32	1.93
10532132--10532247	46	2.4	47	91	4	180	25	18	26	29	1.98
10532228--10532275	24	2.0	24	95	0	87	22	14	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10532179--10532320	73	1.9	73	94	0	248	24	16	27	30	1.97
10532300--10532464	57	3.0	57	82	12	209	27	19	26	27	1.99
10532428--10532502	19	3.9	19	91	0	114	28	21	24	26	1.99
10532477--10532568	26	3.3	26	69	19	87	27	21	26	25	2.00
10532478--10532666	57	3.4	57	83	11	268	26	20	24	28	1.99
10532336--10532619	146	1.9	149	89	5	448	27	20	25	26	1.99
10532300--10532668	203	1.8	202	92	1	623	26	20	25	27	1.99
10532581--10532619	19	2.1	19	85	0	51	28	25	17	28	1.98
10532358--10532685	50	6.5	50	75	14	307	26	19	25	28	1.99
10532649--10532717	32	2.2	32	94	0	120	26	17	26	30	1.97
10532938--10532973	17	2.1	17	89	5	54	75	0	0	25	0.81
10539026--10539056	2	15.5	2	100	0	62	48	0	51	0	1.00
10539815--10539873	16	3.6	16	75	13	57	64	1	0	33	1.04
10542058--10542115	19	2.8	21	80	12	66	58	3	0	37	1.15
10542152--10542248	23	4.2	23	72	14	67	43	4	6	46	1.47
10543523--10543562	21	2.0	20	85	5	53	25	5	17	52	1.64
10546144--10546197	24	2.2	24	83	6	65	29	1	18	50	1.58
10546154--10546207	24	2.3	23	87	6	81	25	0	22	51	1.48
10552220--10552284	28	2.2	28	81	5	76	73	0	15	10	1.08
10553433--10553496	22	2.9	21	73	17	58	29	6	15	48	1.70
10553433--10553498	21	3.0	21	75	12	60	28	6	16	48	1.70
10553432--10553530	45	2.2	45	79	0	117	30	8	15	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10553510--10553605	46	2.1	46	79	9	108	31	6	14	47	1.69
10553664--10553807	48	3.0	46	76	11	141	38	9	11	40	1.72
10554017--10554116	18	5.6	17	76	5	65	28	11	14	47	1.77
10554029--10554119	18	5.1	18	78	0	74	29	10	13	46	1.77
10554196--10554265	22	3.2	21	75	15	70	32	14	11	41	1.81
10554183--10554265	44	1.9	42	85	9	114	33	14	9	42	1.78
10559451--10559626	94	1.9	95	89	1	273	27	18	10	42	1.84
10570466--10570499	16	2.1	17	88	5	52	64	14	2	17	1.40
10572504--10572568	7	8.9	7	75	9	58	20	1	0	78	0.83
10572520--10572568	22	2.2	22	92	3	80	24	0	0	75	0.80
10573217--10573253	18	2.1	18	100	0	74	27	10	27	35	1.90
10575695--10575739	19	2.3	19	85	14	56	44	0	2	53	1.13
10575796--10575827	2	16.0	2	93	0	55	46	0	0	53	1.00
10583783--10584334	282	2.0	279	87	4	790	46	12	8	33	1.72
10587292--10587334	4	10.8	4	80	9	52	76	0	0	23	0.78
10587292--10587340	16	3.0	16	84	3	71	75	2	0	22	0.90
10587270--10587340	26	2.6	28	84	6	83	71	1	1	25	1.02
10588387--10588430	5	8.8	5	89	0	61	59	0	0	40	0.98
10599704--10599744	19	2.1	20	90	4	66	51	4	26	17	1.65
10600009--10600050	15	2.9	14	86	13	50	76	0	0	23	0.79
10600417--10600467	24	2.0	26	81	11	61	43	1	11	43	1.52
10600587--10600782	52	3.7	50	73	11	144	54	9	7	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10600585--10600783	104	1.9	106	85	4	278	53	9	7	29	1.60
10600609--10600819	106	2.0	104	83	7	266	54	7	7	30	1.57
10601330--10601378	19	2.4	21	80	10	66	53	2	0	44	1.12
10601425--10601498	24	3.1	23	83	11	96	35	4	1	59	1.25
10601422--10601498	23	3.3	21	80	20	75	36	3	1	58	1.25
10601552--10601581	15	2.0	15	93	0	51	23	0	0	76	0.78
10601652--10601683	15	2.1	16	94	5	57	15	0	3	81	0.82
10602048--10602115	21	3.3	20	74	10	66	63	0	1	35	1.04
10602920--10602959	17	2.4	17	87	4	55	72	5	0	22	1.04
10611381--10611445	32	2.0	33	96	3	123	40	7	6	46	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129