genome.fa.s13.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  129  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23638341--23638394	11	4.9	11	80	14	67	55	0	0	44	0.99
23638324--23638394	22	3.1	22	78	13	65	54	0	1	43	1.08
23638485--23638549	29	2.2	29	89	5	96	36	9	3	50	1.50
23640543--23640617	22	3.3	25	67	28	69	41	1	0	57	1.07
23640883--23640928	23	2.0	23	83	8	58	32	0	2	65	1.05
23647776--23648026	60	4.1	59	79	13	281	35	9	5	49	1.60
23647887--23648021	69	2.0	68	94	1	234	33	10	4	51	1.56
23648961--23648998	4	9.5	4	83	11	51	71	2	0	26	1.00
23649282--23649457	42	4.1	43	80	3	176	42	19	14	23	1.88
23649249--23649457	44	4.8	44	77	2	208	44	19	12	23	1.85
23649427--23649483	29	2.0	29	89	0	87	35	29	14	21	1.92
23649298--23649614	158	2.0	160	85	2	424	41	22	13	22	1.89
23649456--23649696	44	5.5	44	85	1	331	42	21	12	22	1.87
23649347--23649570	116	1.9	114	87	3	324	39	23	13	23	1.90
23649462--23649696	87	2.7	88	90	1	355	42	22	12	22	1.87
23650753--23650815	24	2.7	24	83	16	87	3	6	6	84	0.87
23661136--23661503	59	6.1	60	82	8	451	35	10	6	46	1.65
23661368--23661499	64	2.0	67	88	5	198	32	10	6	50	1.61
23662592--23662622	15	2.1	15	93	0	53	41	22	12	22	1.88
23667510--23667562	4	12.5	4	76	11	52	39	1	3	54	1.29
23668892--23668916	2	12.5	2	100	0	50	48	0	0	52	1.00
23669154--23669577	229	1.8	231	89	3	669	43	7	3	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23669466--23669532	31	2.1	33	83	10	86	34	4	0	61	1.16
23683414--23683754	55	6.3	55	71	9	162	28	13	11	46	1.78
23683352--23683733	160	2.4	160	80	5	412	28	13	12	45	1.81
23698173--23698218	24	1.9	24	86	8	67	43	0	10	45	1.39
23698503--23698527	9	2.8	9	100	0	50	56	0	0	44	0.99
23698473--23698534	17	3.7	17	76	4	56	58	0	1	40	1.08
23698742--23698787	21	2.1	22	92	4	76	28	8	10	52	1.66
23699248--23699297	25	2.0	25	84	0	64	24	8	16	52	1.70
23699587--23699639	26	2.2	23	83	10	61	60	0	0	39	0.97
23699677--23699749	26	2.9	25	83	4	85	52	0	1	46	1.09
23700809--23700870	32	2.0	30	84	12	81	30	8	0	61	1.25
23701490--23701541	25	2.1	25	92	0	86	28	13	15	42	1.85
23702025--23702054	15	2.0	15	93	0	51	43	26	6	23	1.78
23707866--23707904	19	2.2	17	86	9	51	28	0	0	71	0.86
23708118--23708166	12	3.6	14	74	23	50	16	4	28	51	1.63
23708118--23708211	25	3.6	27	78	9	104	19	7	22	51	1.71
23708118--23708184	26	2.5	26	83	9	82	17	5	23	52	1.67
23708465--23708495	15	2.1	14	94	5	53	25	0	0	74	0.82
23708736--23708816	38	2.1	39	78	15	89	50	8	7	33	1.61
23708753--23708827	38	2.0	38	92	5	125	48	10	12	29	1.74
23711021--23711463	32	13.5	33	72	13	202	32	15	16	35	1.90
23711119--23711551	66	6.6	66	76	11	247	31	15	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23711258--23711397	34	4.2	34	75	13	114	32	16	15	35	1.90
23711021--23711551	165	3.2	160	74	13	393	32	15	16	35	1.91
23711054--23711683	32	19.3	33	69	15	197	31	15	17	35	1.91
23713287--23713313	10	2.7	10	100	0	54	7	0	7	85	0.75
23713493--23713526	17	2.0	17	100	0	68	52	11	11	23	1.70
23714002--23714036	10	3.5	10	92	7	54	0	8	2	88	0.61
23715700--23715735	16	2.2	16	90	0	54	58	5	13	22	1.56
23719157--23719218	14	4.6	14	72	22	51	16	4	25	53	1.62
23719159--23719211	27	2.0	26	88	3	79	13	5	26	54	1.60
23719372--23719490	51	2.3	52	81	9	145	37	5	6	50	1.51
23720543--23720584	11	3.8	11	87	0	66	23	0	26	50	1.50
23720542--23720584	22	2.0	22	95	0	77	25	0	25	48	1.51
23720619--23720754	52	2.6	52	87	2	193	43	8	22	25	1.81
23725393--23725441	23	2.3	23	86	10	68	42	0	2	55	1.11
23727059--23727090	2	16.0	2	100	0	64	50	0	0	50	1.00
23736963--23737292	8	41.5	8	70	7	116	48	25	3	21	1.67
23736964--23737292	16	20.2	16	69	12	154	48	25	3	21	1.67
23745572--23745637	22	2.8	25	79	13	84	43	15	21	19	1.87
23751602--23751953	185	1.9	185	79	5	397	44	3	6	45	1.45
23751390--23754335	180	16.4	178	73	11	1249	42	5	7	43	1.57
23752319--23754190	359	5.2	359	75	8	1071	41	6	7	43	1.60
23751931--23754189	897	2.5	892	77	7	2019	42	6	7	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23752577--23754350	717	2.5	721	78	7	1731	41	6	8	43	1.61
23757587--23757633	19	2.5	19	100	0	94	34	21	10	34	1.88
23762423--23763484	181	5.9	180	76	6	790	41	7	8	42	1.64
23763051--23763083	15	2.3	15	89	5	50	21	0	0	78	0.75
23762581--23764212	359	4.5	356	74	11	959	41	6	8	42	1.62
23763143--23763470	177	1.8	182	83	5	436	43	7	6	42	1.58
23763737--23763769	18	1.9	17	88	11	50	42	3	12	42	1.57
23763496--23764288	181	4.4	179	77	10	660	41	6	9	42	1.61
23763736--23764066	170	1.9	170	84	3	443	41	5	8	44	1.58
23764348--23771737	181	41.3	180	74	9	4327	41	7	8	42	1.64
23764336--23772766	359	23.7	360	74	10	4479	41	7	8	42	1.64
23767334--23767735	174	2.2	180	78	8	428	39	6	8	44	1.62
23769394--23769722	168	2.0	166	82	5	405	41	6	6	44	1.56
23769563--23772369	181	15.7	177	74	9	1457	41	7	8	42	1.64
23771743--23772439	179	3.9	179	76	7	584	43	8	7	40	1.63
23771736--23772439	182	4.0	179	75	8	591	43	8	7	40	1.64
23772626--23772900	134	2.1	134	92	1	453	42	5	8	43	1.57
23772448--23773039	315	1.9	314	83	2	765	40	6	9	44	1.62
23772891--23773177	135	2.1	135	98	0	549	35	7	12	43	1.71
23773725--23773772	17	2.7	18	81	12	55	47	2	8	41	1.45
23773530--23774591	181	6.0	179	76	8	805	41	7	8	42	1.63
23773906--23773938	16	2.0	17	88	5	50	48	3	9	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23774602--23775115	180	2.9	181	79	4	522	41	9	8	39	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129

The End!