genome.fa.s13.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  26  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5266042--5267228	356	3.3	354	85	2	1511	36	12	12	37	1.82
5268002--5268030	11	2.6	11	100	0	58	27	17	20	34	1.95
5272955--5273004	14	3.5	14	72	5	55	44	0	0	56	0.99
5273243--5273310	34	2.0	34	97	0	127	47	1	11	39	1.49
5273522--5273565	21	2.1	21	87	8	63	18	15	2	63	1.41
5278472--5278497	2	13.0	2	100	0	52	50	0	0	50	1.00
5279259--5279287	15	1.9	15	100	0	58	37	6	0	55	1.27
5280048--5280444	198	2.0	198	96	0	731	48	6	11	33	1.65
5282267--5282303	2	19.5	2	86	10	51	48	2	0	48	1.15
5282800--5282842	17	2.4	19	88	7	63	69	0	16	13	1.19
5283270--5283344	29	2.5	30	81	12	75	48	0	1	50	1.09
5284152--5284197	7	6.9	7	82	9	60	76	0	0	23	0.79
5284460--5284496	18	2.2	17	90	9	58	56	0	0	43	0.99
5284565--5284622	27	2.2	26	84	3	71	36	6	0	56	1.26
5292654--5292758	52	2.0	52	88	3	158	45	4	18	31	1.70
5293936--5293999	31	2.1	30	85	8	85	32	3	7	56	1.44
5295974--5296019	24	1.9	24	95	0	83	36	2	13	47	1.54
5297753--5297791	20	2.0	20	85	10	53	69	2	5	23	1.21
5297842--5297890	26	1.9	26	83	4	64	36	20	20	22	1.95
5298461--5298653	107	1.8	107	88	2	298	34	9	16	40	1.80
5298461--5298676	107	2.0	107	85	5	294	33	8	17	40	1.80
5298593--5298713	62	2.0	62	85	3	163	30	9	15	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5298599--5298738	62	2.3	62	81	7	160	32	8	12	45	1.73
5299064--5299295	125	1.9	124	80	10	276	33	17	12	37	1.86
5299064--5299295	62	3.7	63	79	10	230	33	17	12	37	1.86
5299240--5299352	60	1.9	59	80	12	133	27	15	12	44	1.83
5299574--5299715	62	2.3	63	81	3	162	38	13	10	37	1.79
5300108--5300147	22	1.9	20	90	10	62	50	20	5	25	1.68
5302996--5303051	24	2.4	24	84	3	69	66	8	1	23	1.30
5306688--5306736	20	2.6	19	81	15	57	75	4	4	16	1.11
5306694--5306739	20	2.3	20	81	7	58	76	4	6	13	1.14
5307137--5307185	22	2.2	22	81	0	62	24	12	32	30	1.92
5307150--5307192	22	2.0	22	81	9	52	25	11	32	30	1.91
5307172--5307452	84	3.3	84	76	8	286	35	17	17	29	1.93
5307775--5307812	14	2.8	14	88	4	51	47	10	15	26	1.78
5311400--5311549	65	2.3	66	89	4	232	49	10	14	26	1.74
5314116--5314309	68	2.8	68	90	2	298	37	6	12	43	1.68
5315115--5315250	55	2.5	54	83	4	157	47	12	11	29	1.76
5315227--5315520	159	1.8	158	82	5	376	45	12	13	27	1.80
5318435--5318484	14	3.4	14	79	15	55	68	0	2	30	1.01
5318444--5318485	6	6.8	6	84	15	59	64	0	2	33	1.07
5318540--5318570	16	2.0	16	93	6	55	51	3	0	45	1.17
5318628--5318706	36	2.4	31	78	19	81	34	1	3	60	1.23
5322816--5322868	10	5.5	10	88	2	74	90	1	0	7	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5322815--5322868	25	2.2	24	90	6	83	88	1	0	9	0.58
5322816--5322868	1	53.0	1	80	0	61	90	1	0	7	0.52
5324168--5324725	33	16.7	33	79	9	551	29	20	14	34	1.93
5324160--5324778	65	9.3	66	78	11	570	30	20	14	34	1.93
5324427--5324741	110	3.0	110	81	9	349	30	20	14	34	1.93
5324397--5324678	143	2.0	143	87	5	410	30	20	14	34	1.93
5324298--5324741	241	1.8	239	85	6	619	30	20	14	35	1.92
5324540--5324778	33	7.4	31	81	10	148	30	20	15	34	1.93
5325349--5325639	86	3.4	87	82	4	304	23	18	17	40	1.91
5325460--5325528	36	1.9	36	85	5	95	23	20	14	42	1.89
5325908--5325945	20	1.9	19	94	5	67	55	0	0	44	0.99
5325934--5325973	3	13.3	3	100	0	80	67	0	0	32	0.91
5327336--5327566	43	5.2	44	78	9	238	44	14	13	27	1.83
5327327--5327566	88	2.7	89	83	5	301	43	15	13	27	1.84
5327530--5327650	60	2.0	64	83	9	162	50	10	10	28	1.70
5327589--5327736	43	3.5	42	85	3	197	45	14	13	26	1.81
5327442--5327734	148	2.0	146	85	6	396	46	14	12	26	1.81
5327484--5327692	105	2.0	106	82	8	257	47	14	11	26	1.78
5329097--5329148	17	3.1	16	73	15	52	11	11	0	76	1.01
5329124--5329168	20	2.4	19	85	7	56	8	8	2	80	1.00
5336318--5336352	15	2.4	14	90	9	61	37	2	0	60	1.12
5337395--5337432	14	2.7	15	84	8	53	10	7	2	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5345170--5345312	14	9.9	14	69	8	90	20	0	30	48	1.49
5345231--5345312	30	2.9	28	76	7	56	19	0	34	46	1.50
5345548--5345587	3	13.3	3	84	10	55	32	0	2	65	1.06
5346781--5346828	25	2.0	23	88	8	69	43	2	2	52	1.24
5346771--5346829	25	2.3	24	77	11	64	47	1	1	49	1.21
5347044--5347300	88	2.9	87	81	4	293	43	17	17	21	1.88
5347424--5347513	41	2.2	42	82	9	114	31	15	16	36	1.90
5349760--5349784	9	2.8	9	100	0	50	8	0	8	84	0.79
5355163--5355202	20	2.1	20	86	9	57	37	0	2	60	1.11
5355644--5355720	30	2.7	28	82	6	91	22	0	27	50	1.49
5355709--5355771	14	4.4	14	76	7	54	19	0	33	47	1.49
5357102--5357144	21	2.0	21	82	8	52	16	11	48	23	1.78
5361841--5362019	43	4.2	43	82	2	207	31	13	13	40	1.84
5361849--5362018	86	2.0	86	85	2	234	30	14	14	40	1.86
5361977--5362076	36	2.8	36	75	4	105	28	12	19	41	1.86
5363235--5363299	34	1.9	34	81	12	80	21	4	3	70	1.19
5363371--5363406	18	2.0	18	89	10	56	66	2	5	25	1.27
5363421--5363743	122	2.7	122	83	6	397	45	4	9	40	1.56
5363751--5363804	17	3.3	16	76	19	58	74	1	0	24	0.92
5364109--5364153	17	2.6	17	89	0	72	57	22	4	15	1.56
5365727--5365778	23	2.4	21	83	6	59	53	3	13	28	1.57
5365727--5365785	21	2.7	23	86	5	77	54	3	15	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5365825--5365958	41	3.3	40	80	5	144	36	17	11	34	1.86
5366061--5366915	104	8.2	104	78	7	621	34	14	14	36	1.86
5367641--5367690	25	2.0	25	84	7	66	76	16	0	8	1.02
5369744--5369803	3	20.0	3	100	0	120	66	0	0	33	0.92
5378863--5378966	30	3.5	29	78	5	118	41	8	0	49	1.40
5378844--5379000	60	2.6	60	77	9	149	40	5	1	51	1.37
5388668--5388709	20	2.0	23	86	13	63	57	2	2	38	1.25
5392142--5392184	16	2.6	16	77	3	50	34	6	0	58	1.25
5392170--5392210	20	2.1	19	86	4	55	39	7	0	53	1.29
5393178--5393236	26	2.3	26	83	11	70	44	1	5	49	1.34
5393260--5393292	17	1.9	17	93	0	57	51	9	21	18	1.73
5395128--5395174	4	11.2	4	82	13	51	19	0	2	78	0.85
5395133--5395174	13	3.2	13	90	6	59	19	0	2	78	0.86
5397501--5397560	22	2.8	22	80	5	70	26	5	0	68	1.10
5397701--5397746	21	2.2	21	84	7	58	23	4	2	69	1.17
5397730--5397805	13	5.8	13	71	4	55	36	1	0	61	1.04
5399059--5399551	142	3.5	140	80	7	475	40	17	11	30	1.84
5399067--5399551	49	10.3	48	80	7	417	41	17	10	30	1.84
5399346--5399548	45	4.4	45	80	7	221	39	19	11	30	1.86
5399067--5399548	92	5.1	92	79	9	320	41	17	10	30	1.84
5408974--5409006	16	2.1	16	88	5	50	36	30	12	21	1.90
5411643--5411687	22	2.0	22	82	0	54	33	4	0	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5417969--5419386	471	3.0	469	90	2	2194	33	25	13	26	1.94
5437573--5437632	25	2.3	26	75	11	61	48	0	1	50	1.11
5438629--5438668	21	1.9	21	90	10	64	60	0	2	37	1.11
5438629--5438675	22	2.1	22	84	7	60	55	0	2	42	1.12
5445231--5445269	4	9.8	4	100	0	78	51	23	0	25	1.49
5455625--5455657	11	3.3	10	88	12	50	0	9	0	90	0.44
5460745--5460778	16	2.1	16	94	0	59	20	5	5	67	1.33
5463018--5463066	18	2.5	21	81	15	61	24	4	2	69	1.17
5463093--5463132	10	4.0	10	83	9	55	77	0	2	20	0.88
5463093--5463148	21	2.7	21	84	13	64	76	3	1	17	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129