genome.fa.s13.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  66  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12541952--12542313	130	2.7	129	81	6	406	40	8	4	45	1.57
12541957--12542393	133	3.4	126	78	10	316	41	9	5	44	1.58
12556143--12556285	63	2.3	63	81	8	166	35	9	20	33	1.86
12557317--12557401	25	3.4	25	80	1	107	45	22	7	24	1.77
12557317--12557401	13	6.7	13	73	18	72	45	22	7	24	1.77
12557328--12557403	37	2.1	37	82	5	91	46	23	6	23	1.76
12558451--12558597	63	2.3	63	80	6	156	41	13	9	35	1.77
12559175--12559209	13	2.7	13	86	0	52	48	20	2	28	1.63
12571568--12571602	7	4.7	7	89	10	52	68	0	0	31	0.90
12575220--12575248	14	2.0	15	93	6	51	62	10	0	27	1.28
12583372--12584045	49	13.8	49	83	4	808	29	11	22	36	1.90
12583379--12584052	99	6.9	100	83	4	806	29	12	21	36	1.90
12584237--12584286	3	16.7	3	100	0	100	34	32	0	34	1.58
12584285--12584323	3	13.0	3	94	0	69	33	2	0	64	1.08
12584322--12584365	10	4.4	10	83	11	54	0	18	2	79	0.83
12587662--12587710	23	2.2	22	85	3	62	28	10	2	59	1.41
12594870--12594929	31	1.9	31	86	0	84	35	11	21	31	1.90
12600124--12600167	20	2.2	20	88	8	63	45	15	9	29	1.77
12605138--12605170	9	3.7	9	88	11	50	90	0	0	9	0.44
12605140--12605167	10	2.8	10	100	0	56	92	0	0	7	0.37
12607674--12607859	75	2.8	63	75	18	187	42	9	6	41	1.64
12607680--12607828	75	2.0	75	97	0	280	41	10	5	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12611834--12611878	6	7.7	6	92	5	56	84	6	0	8	0.78
12611834--12611859	11	2.4	11	100	0	52	84	0	0	15	0.62
12614283--12614775	147	3.4	145	79	5	503	30	14	13	40	1.85
12617877--12617919	16	2.6	16	81	3	50	41	4	0	53	1.21
12618534--12618609	40	1.9	40	81	7	93	52	1	3	42	1.28
12619292--12619321	15	2.0	15	93	0	51	56	0	0	43	0.99
12619539--12619566	13	2.2	13	100	0	56	32	0	0	67	0.91
12619527--12619603	29	2.7	29	64	9	68	50	0	0	49	1.00
12619798--12619830	6	5.5	6	100	0	66	30	0	36	33	1.58
12621777--12621962	92	2.0	92	100	0	372	31	12	14	41	1.84
12621994--12622091	36	2.8	38	69	20	88	25	6	2	66	1.26
12622597--12622627	3	10.3	3	100	0	62	64	0	0	35	0.94
12622702--12622735	3	11.3	3	100	0	68	35	32	0	32	1.58
12622734--12622773	3	13.3	3	100	0	80	65	0	0	35	0.93
12624894--12625026	63	2.1	63	83	5	162	36	4	11	48	1.60
12624957--12625110	84	1.8	84	88	2	238	35	3	12	49	1.57
12624787--12625134	147	2.4	147	87	3	486	35	5	12	47	1.63
12627933--12627974	5	8.4	5	79	10	50	21	4	2	71	1.16
12627931--12627970	19	2.0	20	90	4	64	20	7	2	70	1.24
12640917--12640963	20	2.3	20	96	0	85	29	10	14	44	1.79
12641328--12641500	83	2.1	83	81	6	199	36	21	10	30	1.88
12641903--12641983	38	2.2	38	90	2	128	40	19	7	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12641858--12642157	164	1.8	165	83	5	399	36	21	10	31	1.88
12641941--12642380	126	3.5	125	80	6	442	34	20	12	31	1.90
12642371--12642420	26	1.9	26	91	0	82	42	18	16	24	1.89
12642368--12642432	26	2.5	25	80	9	76	38	16	13	30	1.88
12642545--12642593	18	2.7	18	80	0	53	20	20	14	44	1.86
12642951--12643141	96	2.0	96	87	4	278	37	18	10	34	1.85
12643139--12643291	83	1.8	83	85	2	218	35	14	11	38	1.82
12643554--12643664	6	17.5	6	77	17	84	79	17	0	2	0.90
12643556--12643632	37	2.1	37	90	9	122	83	14	0	2	0.76
12643555--12643645	7	13.3	7	77	16	66	81	15	1	2	0.85
12643668--12643783	36	3.2	37	86	3	146	25	17	20	36	1.94
12644185--12644235	21	2.4	21	80	6	59	43	13	15	27	1.85
12644331--12644733	146	2.8	144	80	9	451	32	13	11	42	1.80
12646095--12646189	47	2.0	47	93	0	163	49	10	10	29	1.71
12661155--12661185	16	1.9	16	93	0	53	35	6	6	51	1.53
12661552--12661751	102	2.0	102	90	0	319	35	7	14	44	1.72
12663761--12663809	20	2.5	19	83	3	62	79	8	6	6	1.05
12663760--12663807	19	2.4	21	86	6	64	81	8	4	6	0.98
12664848--12664880	17	1.9	17	100	0	66	30	15	12	42	1.83
12666476--12666579	32	3.0	36	81	8	117	27	10	14	47	1.77
12667318--12667507	103	1.8	104	80	5	233	40	14	8	36	1.78
12667788--12667850	19	3.3	19	78	10	58	74	7	0	17	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12671495--12671572	41	1.9	41	97	0	147	38	17	6	37	1.76
12674490--12674628	62	2.2	62	76	10	147	38	13	14	33	1.85
12674525--12674641	62	1.9	62	84	7	157	40	10	15	34	1.81
12674540--12674764	122	1.8	122	81	3	283	35	12	14	37	1.84
12675043--12675069	9	3.0	9	100	0	54	44	22	0	33	1.53
12675043--12675078	18	2.0	18	88	0	54	44	19	2	33	1.65
12678233--12678298	22	2.9	22	76	15	62	56	3	3	37	1.30
12678585--12678649	32	2.0	32	87	0	94	29	13	10	46	1.77
12679927--12680086	72	2.2	71	82	6	189	35	9	7	48	1.64
12680088--12680153	20	3.3	20	66	16	55	31	16	9	42	1.80
12680068--12680164	40	2.4	40	94	0	167	31	15	10	42	1.81
12680132--12680310	74	2.5	71	84	7	218	36	12	7	43	1.71
12691740--12691899	73	2.2	75	85	4	209	20	18	26	34	1.96
12693445--12693479	16	2.2	16	94	0	61	42	11	14	31	1.81
12697992--12698043	20	2.5	20	81	3	59	25	26	21	26	1.99
12701817--12701856	21	1.9	21	94	0	71	50	7	12	30	1.68
12705930--12706001	34	2.1	35	81	5	83	40	6	12	40	1.70
12706190--12706231	20	2.1	20	95	0	75	40	7	16	35	1.76
12707399--12707461	21	3.0	21	86	4	83	55	0	3	41	1.16
12707532--12707607	27	2.6	29	76	19	70	53	0	5	40	1.23
12707572--12707606	17	2.0	18	88	5	54	62	0	0	37	0.95
12707980--12708020	20	2.0	20	100	0	82	56	9	14	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12715533--12715562	15	2.0	15	93	0	51	56	13	13	16	1.67
12716019--12716044	12	2.2	12	100	0	52	80	0	19	0	0.71
12729005--12729234	124	1.9	123	80	5	277	35	15	14	34	1.88
12729066--12729308	123	2.0	124	79	7	271	39	13	15	31	1.86
12729191--12729318	61	2.1	61	85	1	166	43	12	14	28	1.82
12732351--12732408	22	2.6	22	97	0	107	46	3	15	34	1.63
12732479--12732546	32	2.2	32	83	2	84	29	16	10	44	1.80
12733029--12733185	72	2.2	73	88	1	235	36	8	5	48	1.58
12733065--12733211	72	2.0	72	88	0	213	38	7	6	46	1.59
12733205--12733301	40	2.4	40	84	0	140	34	16	8	41	1.78
12733277--12733440	75	2.2	71	82	6	193	33	10	8	47	1.68
12747269--12747323	26	2.1	26	80	12	60	12	25	0	61	1.31
12748826--12748865	21	1.9	21	94	0	71	50	7	12	30	1.68
12752929--12752999	34	2.1	35	81	7	83	40	7	12	39	1.70
12753189--12753230	20	2.1	20	100	0	84	40	4	16	38	1.70
12754943--12754983	20	2.0	20	100	0	82	56	9	14	19	1.66
12756748--12756789	15	2.7	15	85	10	50	50	11	0	38	1.40
12758245--12758674	122	3.5	123	81	4	431	35	15	15	33	1.89
12758431--12758614	62	3.0	60	71	12	160	36	16	17	29	1.92
12759180--12759290	53	2.0	56	87	5	165	43	9	15	31	1.79
12760401--12760486	33	2.6	34	78	5	97	34	10	11	43	1.76
12760996--12761033	19	2.0	20	84	5	51	18	7	0	73	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12762060--12762090	13	2.4	13	94	0	53	64	0	12	22	1.27
12762392--12762574	98	1.9	98	89	0	285	38	8	6	47	1.58
12765302--12765340	20	2.0	19	90	5	60	25	15	10	48	1.76
12778742--12778799	31	1.9	31	89	10	93	24	13	13	48	1.79
12780265--12780997	161	4.6	162	83	3	833	32	10	15	42	1.80
12788217--12788241	11	2.3	11	100	0	50	28	0	16	56	1.41
12788620--12788880	131	2.0	131	96	1	479	34	12	20	32	1.90
12791487--12791602	61	1.9	61	85	3	162	23	13	9	53	1.69
12792038--12792075	11	3.4	11	86	13	51	15	0	0	84	0.63
12792039--12792076	15	2.5	15	91	8	60	15	0	0	84	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129