genome.fa.s13.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  95  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17099948--17100017	3	23.3	3	94	0	122	65	2	0	31	1.07
17100032--17100436	220	1.8	221	91	1	679	55	7	5	31	1.51
17101328--17101381	20	2.7	20	76	2	54	53	5	1	38	1.35
17103402--17103662	7	39.0	7	69	14	131	21	2	37	39	1.66
17103511--17103582	13	5.5	13	70	18	51	22	1	31	44	1.61
17103487--17103563	40	1.9	41	84	12	106	20	2	33	42	1.66
17103398--17103598	20	9.9	20	69	15	87	22	1	36	39	1.63
17103552--17103594	19	2.3	19	88	4	61	23	0	32	44	1.54
17108351--17108750	84	4.8	84	73	6	321	40	14	17	28	1.89
17108311--17108761	126	3.6	126	76	6	303	40	14	16	28	1.88
17108203--17108816	41	14.9	41	76	4	394	39	13	17	28	1.88
17108311--17108819	84	6.2	82	72	7	267	39	14	17	28	1.89
17109136--17109450	71	4.5	71	79	5	290	44	9	14	31	1.77
17109912--17109952	21	2.0	21	90	0	64	51	26	7	14	1.69
17109918--17109951	14	2.4	14	85	0	50	50	29	5	14	1.67
17111368--17111426	10	5.9	10	80	5	66	11	16	1	69	1.26
17112035--17112094	11	5.5	11	88	7	95	6	13	0	80	0.91
17115293--17115785	246	2.0	246	98	0	959	37	15	16	31	1.89
17115847--17115912	35	1.9	33	84	6	87	37	9	0	53	1.33
17116310--17116372	27	2.3	27	81	7	74	17	0	33	49	1.47
17116377--17116566	13	14.5	13	68	13	52	17	1	33	47	1.55
17116382--17116587	7	31.3	7	70	13	116	18	0	33	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17116382--17116587	20	10.1	20	71	16	120	18	0	33	47	1.55
17116544--17116572	13	2.1	14	93	6	51	24	0	31	44	1.54
17117949--17118184	128	1.8	129	83	4	316	38	16	11	33	1.85
17123486--17123911	213	2.0	213	99	0	834	33	17	15	34	1.91
17130506--17130606	51	2.0	52	92	2	168	31	15	14	37	1.89
17134108--17134138	12	2.5	13	94	5	55	25	0	9	64	1.24
17134660--17134693	15	2.3	15	89	0	50	61	26	0	11	1.30
17136433--17136481	20	2.4	20	79	3	53	30	14	22	32	1.93
17137287--17137343	30	1.9	30	100	0	114	50	10	10	28	1.69
17145453--17145490	16	2.3	17	86	4	51	15	0	10	73	1.09
17145453--17145490	17	2.2	17	86	9	51	15	0	10	73	1.09
17146127--17146184	30	2.0	30	86	10	84	27	6	13	51	1.66
17150727--17150762	4	9.0	4	88	11	56	0	22	2	75	0.94
17151517--17151555	13	2.9	13	88	3	60	71	0	0	28	0.86
17151517--17151556	6	5.9	7	83	16	57	72	0	0	27	0.85
17151760--17151805	24	1.9	24	82	8	58	39	2	2	56	1.24
17157186--17157221	2	18.0	2	94	0	63	0	52	0	47	1.00
17160010--17160077	27	2.5	27	87	0	91	33	4	10	51	1.56
17160108--17160164	22	2.7	21	81	10	64	35	7	12	45	1.69
17160467--17160520	22	2.5	22	84	0	72	31	0	11	57	1.34
17160534--17160749	22	10.0	21	67	20	92	40	8	6	44	1.60
17160660--17160693	15	2.3	15	89	0	50	38	5	0	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17160733--17160798	22	3.0	22	78	10	80	28	9	7	54	1.59
17160902--17161009	22	4.8	21	68	20	67	34	4	8	52	1.52
17160931--17161114	22	8.4	22	69	11	81	37	7	5	48	1.56
17161785--17161844	30	2.0	30	93	0	102	41	5	8	45	1.56
17161934--17162005	22	3.3	22	78	0	81	40	8	4	47	1.53
17162258--17162341	21	4.0	21	83	10	100	34	14	5	45	1.69
17162259--17162341	43	1.9	43	83	9	107	33	14	6	45	1.69
17165438--17165482	17	2.6	17	75	0	54	37	17	11	33	1.85
17165563--17165639	17	4.5	17	73	18	54	35	19	14	31	1.92
17165710--17165893	18	10.3	18	69	13	80	32	13	14	39	1.85
17165967--17166035	36	1.9	36	84	0	93	30	13	14	42	1.84
17165950--17166054	54	1.9	54	83	11	135	32	12	13	41	1.81
17166018--17166066	17	2.6	19	78	15	66	28	6	16	48	1.69
17166081--17166120	19	2.1	19	86	9	55	22	7	12	57	1.60
17166650--17166701	15	3.5	15	81	5	61	63	11	1	23	1.37
17166639--17166699	30	2.0	30	87	0	86	57	11	3	27	1.49
17168201--17168255	5	10.8	5	79	16	60	78	1	3	16	0.98
17168221--17168263	19	2.2	20	83	4	52	76	2	9	11	1.10
17168645--17168682	19	2.0	20	89	5	60	73	7	2	15	1.17
17169114--17169189	3	25.7	3	84	5	93	63	0	5	31	1.17
17169614--17170024	116	3.5	116	81	6	422	40	13	22	23	1.89
17169584--17170133	117	4.7	117	78	5	353	39	12	22	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17170630--17170678	20	2.5	20	83	3	64	59	6	18	16	1.57
17174974--17175015	5	8.2	5	94	5	75	78	0	0	21	0.75
17175859--17175947	3	30.7	3	80	8	96	64	0	4	31	1.14
17176003--17176063	26	2.3	26	85	0	77	26	29	24	19	1.99
17176413--17176454	20	2.2	20	91	4	68	35	4	7	52	1.50
17176461--17176492	14	2.3	14	94	0	55	25	3	18	53	1.59
17177793--17177830	20	1.9	20	88	0	58	15	2	10	71	1.25
17181030--17181066	9	4.1	9	90	10	58	91	0	8	0	0.41
17181033--17181066	10	3.5	10	92	8	61	91	0	8	0	0.43
17181064--17181103	12	3.3	12	96	0	71	57	0	42	0	0.98
17181064--17181103	6	6.7	6	88	0	62	57	0	42	0	0.98
17182569--17182720	46	3.3	47	79	5	168	36	9	15	39	1.79
17183047--17183110	18	3.6	18	76	4	58	35	17	14	32	1.89
17183083--17183121	18	2.2	18	90	0	60	41	5	12	41	1.65
17183233--17183267	18	1.9	18	88	0	52	25	17	8	48	1.75
17183400--17183486	44	2.0	43	82	6	104	34	10	10	44	1.73
17184023--17184083	30	2.0	30	81	6	70	55	13	4	26	1.57
17186179--17186252	21	3.5	20	82	10	87	33	9	12	44	1.74
17186178--17186308	42	3.2	40	76	16	126	32	7	11	48	1.68
17186599--17186714	22	5.3	22	70	10	85	39	10	5	44	1.61
17186650--17186783	22	6.1	22	74	10	103	35	11	5	47	1.64
17186543--17186782	66	3.6	66	76	8	186	36	9	6	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17186543--17187126	44	13.2	43	69	10	214	37	10	5	46	1.61
17186829--17187126	22	13.4	22	71	9	140	37	9	5	47	1.59
17187575--17187625	22	2.3	21	86	6	66	45	13	5	35	1.68
17187691--17187730	19	2.1	19	90	0	62	40	12	2	45	1.56
17187623--17187764	22	6.6	22	73	12	80	38	7	4	50	1.51
17187624--17187794	85	2.0	85	80	6	195	36	8	5	49	1.58
17187837--17187953	22	5.4	21	72	13	78	32	7	9	50	1.63
17187980--17188048	22	3.1	22	77	4	59	36	11	7	44	1.68
17188276--17188334	22	2.7	22	84	10	68	33	6	5	54	1.49
17189352--17189410	16	3.6	16	84	10	75	45	1	0	52	1.10
17189353--17189410	15	3.6	16	84	11	73	46	1	0	51	1.11
17189353--17189417	16	4.0	15	77	18	60	49	3	0	47	1.17
17194405--17194476	38	2.0	37	89	8	112	36	6	20	36	1.80
17198845--17199339	160	3.1	157	79	9	524	41	18	9	31	1.82
17202946--17203001	27	2.0	27	83	16	71	55	7	12	25	1.62
17202946--17203001	26	2.0	27	83	16	71	55	7	12	25	1.62
17202971--17203036	18	3.8	18	75	11	66	51	6	15	27	1.66
17203102--17203190	40	2.2	40	84	4	108	21	2	29	47	1.63
17205444--17205502	4	14.8	4	77	19	61	74	1	3	20	1.05
17205439--17205540	31	3.4	31	75	16	99	73	1	2	21	1.06
17205439--17205540	17	5.7	18	76	15	79	73	1	2	21	1.06
17205439--17205541	27	3.7	26	73	15	89	73	1	2	21	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17206344--17206436	3	31.7	3	80	8	93	65	1	2	31	1.11
17206393--17206464	32	2.2	33	82	4	85	58	5	2	33	1.36
17206478--17206537	15	4.1	15	74	4	52	46	0	8	45	1.33
17206546--17206586	19	2.2	18	82	4	55	68	12	0	19	1.21
17218468--17218528	27	2.2	27	85	2	77	75	3	3	18	1.08
17218472--17218531	19	3.1	19	77	22	63	75	3	3	18	1.09
17218493--17218563	31	2.4	31	79	11	85	76	4	0	19	0.96
17219032--17219082	22	2.3	22	82	0	57	52	23	5	17	1.66
17219422--17219495	32	2.2	33	86	9	98	56	8	5	29	1.51
17219509--17219557	15	3.3	15	82	0	62	42	2	10	44	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129