genome.fa.s13.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  35  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7232856--7232880	10	2.5	10	100	0	50	24	0	0	76	0.80
7232854--7232900	18	2.6	17	78	15	51	23	2	2	72	1.06
7233040--7233106	8	8.2	8	70	20	50	73	1	2	22	1.06
7233214--7233261	23	2.0	23	84	11	62	77	6	2	14	1.06
7237312--7237360	22	2.2	22	92	0	80	30	26	8	34	1.86
7246343--7246382	19	2.2	17	86	8	53	17	2	5	75	1.10
7246489--7246523	10	3.5	10	88	0	52	60	5	5	28	1.43
7246519--7246573	9	6.4	8	78	12	56	72	3	1	21	1.09
7246675--7246733	19	3.2	18	73	20	50	74	3	3	18	1.10
7247038--7247064	14	1.9	14	100	0	54	59	0	0	40	0.98
7247346--7247393	22	2.3	21	89	7	71	64	0	2	33	1.05
7254935--7255011	17	4.4	17	80	15	77	80	2	6	10	0.98
7254949--7255010	19	3.4	18	80	6	72	83	1	8	6	0.86
7254959--7255014	28	2.0	28	85	0	76	80	1	10	7	0.97
7255921--7256507	134	4.4	129	79	9	560	38	7	7	46	1.61
7258851--7259693	262	3.2	259	82	6	850	39	7	7	45	1.60
7258848--7259693	133	6.5	130	81	5	818	39	7	7	45	1.60
7258844--7259692	392	2.2	394	81	5	986	39	7	7	45	1.61
7273063--7273243	101	1.8	100	85	3	256	43	1	15	40	1.54
7273931--7273963	17	2.0	17	88	5	50	66	6	9	18	1.40
7275485--7275542	6	11.4	5	82	14	50	58	0	0	41	0.98
7275487--7275575	20	4.9	18	81	10	74	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7275485--7275575	28	3.1	28	81	10	92	54	0	0	45	0.99
7275491--7275578	6	14.5	6	86	4	99	54	0	0	45	0.99
7276111--7276152	21	2.0	22	90	4	68	50	4	21	23	1.68
7276189--7276246	19	3.1	19	78	14	66	56	0	0	43	0.99
7276185--7276250	19	3.5	20	73	19	54	60	0	0	39	0.97
7276221--7276294	29	2.4	32	78	17	93	52	0	0	47	1.00
7276245--7276347	31	3.4	30	78	14	95	50	0	0	48	1.07
7276251--7276353	32	3.3	31	80	10	97	48	0	0	50	1.07
7276149--7276315	13	13.2	13	65	17	59	55	0	1	43	1.07
7276686--7276723	19	2.0	19	89	0	58	36	0	0	63	0.95
7277082--7277114	2	17.0	2	87	6	50	45	0	0	54	0.99
7277092--7277151	15	3.9	15	80	2	57	45	1	5	48	1.34
7277736--7277790	28	1.9	29	85	3	76	58	7	1	32	1.36
7281291--7281325	2	17.5	2	93	0	61	48	0	0	51	1.00
7282398--7282432	18	1.9	18	94	0	61	0	31	0	68	0.90
7284713--7284739	6	4.5	6	100	0	54	48	0	33	18	1.49
7286754--7287029	100	2.7	101	80	9	276	43	9	8	38	1.68
7286754--7287048	103	2.9	98	79	8	279	43	8	9	38	1.68
7291955--7292000	23	2.0	23	82	0	56	28	19	8	43	1.80
7292316--7292489	83	2.1	82	81	7	192	33	12	15	37	1.85
7293339--7293630	144	2.0	147	93	4	509	52	17	7	22	1.70
7293952--7294233	101	2.7	103	78	6	304	46	9	8	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7295531--7295634	51	2.0	53	86	3	149	29	20	3	46	1.68
7298523--7298547	13	1.9	13	100	0	50	88	4	0	8	0.64
7298939--7299024	45	1.9	45	95	0	154	29	10	24	36	1.89
7304688--7304730	23	1.9	22	90	0	59	76	6	2	13	1.08
7308047--7308091	19	2.2	20	88	7	65	35	11	6	46	1.66
7314894--7314939	22	2.1	21	88	4	65	63	0	0	36	0.95
7318505--7318534	15	1.9	15	93	6	51	66	0	0	33	0.92
7323424--7323460	17	2.2	16	90	4	56	37	0	0	62	0.96
7325593--7325622	12	2.6	12	94	5	53	40	0	0	60	0.97
7325674--7325720	15	3.1	15	81	6	51	40	2	2	55	1.24
7331931--7331988	24	2.4	24	97	0	107	37	10	13	37	1.79
7332494--7334005	187	8.2	184	78	7	1377	41	10	11	36	1.76
7333358--7333862	166	2.9	167	76	10	383	41	10	11	36	1.76
7338724--7338782	31	1.9	30	83	13	75	42	10	13	33	1.78
7346350--7346418	33	2.1	33	83	5	86	18	14	24	42	1.88
7348626--7348655	2	15.0	2	100	0	60	50	0	0	50	1.00
7356060--7356136	33	2.4	32	80	6	84	50	0	1	48	1.09
7356146--7356195	24	2.1	24	82	10	59	44	4	8	44	1.52
7356537--7356570	10	3.3	10	88	8	50	32	0	5	61	1.20
7357003--7357039	14	2.7	14	95	4	67	67	5	0	27	1.12
7361390--7361480	45	2.0	45	82	8	112	34	7	6	51	1.56
7361886--7361916	16	2.0	16	93	6	55	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7362494--7362529	15	2.6	13	84	16	54	41	0	5	52	1.24
7362495--7362526	15	2.1	15	100	0	64	37	0	6	56	1.25
7368861--7368888	10	2.8	10	100	0	56	42	0	0	57	0.99
7374036--7374084	24	2.0	24	100	0	98	26	28	12	32	1.92
7377118--7377184	7	8.7	7	75	18	62	80	2	2	13	0.94
7377483--7377548	7	8.9	7	76	12	51	81	3	4	10	0.94
7377509--7377548	21	1.9	21	94	0	71	82	5	0	12	0.82
7378296--7378328	16	2.1	16	94	5	59	42	6	0	51	1.26
7378872--7378905	16	2.1	16	89	10	52	85	8	0	5	0.75
7378971--7379021	19	2.6	20	81	3	68	78	1	11	7	1.04
7383395--7383423	8	3.8	8	95	4	51	37	0	0	62	0.96
7383855--7383926	14	4.8	15	75	21	55	76	2	18	2	1.03
7384196--7384247	22	2.3	23	83	9	63	73	1	11	13	1.19
7385077--7385112	17	2.1	17	89	0	54	83	0	11	5	0.80
7385077--7385112	16	2.2	16	90	5	54	83	0	11	5	0.80
7385574--7385608	10	3.5	10	84	0	52	85	0	11	2	0.69
7387597--7387641	23	2.0	23	95	0	81	46	4	2	46	1.35
7392032--7392062	2	15.5	2	100	0	62	51	0	0	48	1.00
7404345--7404372	9	3.1	9	100	0	56	21	14	32	32	1.93
7412887--7412946	12	4.8	13	80	13	65	31	0	0	68	0.90
7415893--7415922	2	15.0	2	100	0	60	50	0	50	0	1.00
7418815--7418855	21	2.0	21	90	4	66	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7419689--7419738	25	2.0	25	92	0	82	32	2	18	48	1.59
7419772--7419813	12	3.5	12	80	9	50	38	0	2	59	1.10
7419771--7419813	18	2.4	18	80	0	50	39	0	2	58	1.11
7425484--7425589	51	2.1	51	85	3	142	59	6	8	25	1.51
7427782--7427819	2	19.0	2	100	0	76	50	0	50	0	1.00
7428079--7428113	18	1.9	18	88	11	54	31	2	5	60	1.35
7435242--7435477	112	2.1	113	98	0	456	52	7	6	33	1.54
7439998--7440045	19	2.4	21	83	13	66	58	0	0	41	0.98
7440052--7440113	11	5.2	12	86	9	83	37	0	0	62	0.95
7445216--7445449	116	2.0	116	88	3	346	36	8	17	37	1.80
7446934--7446963	16	1.9	16	93	6	53	46	3	0	50	1.18
7453588--7454906	186	7.1	182	82	5	1326	40	10	15	34	1.81
7453592--7454906	372	3.5	371	81	4	1501	39	10	14	34	1.81
7465187--7465249	11	5.6	11	72	10	56	33	1	19	46	1.59
7473234--7473268	18	2.0	17	88	5	52	40	2	5	51	1.40
7473443--7473486	21	2.0	22	95	4	81	36	15	9	38	1.80
7478061--7478090	16	1.9	15	93	6	51	83	0	0	16	0.65
7480691--7480718	14	2.0	14	100	0	56	21	0	42	35	1.53
7484527--7484567	19	2.1	20	82	13	50	65	4	2	26	1.25
7486197--7486227	13	2.4	13	94	0	53	35	0	9	54	1.33
7496379--7496409	12	2.6	12	94	0	53	32	38	0	29	1.57
7496391--7496689	63	4.7	64	73	11	184	34	14	9	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7496424--7496723	128	2.4	125	79	5	336	36	13	9	41	1.77
7496523--7496718	62	3.1	61	78	6	196	35	13	7	44	1.71
7498445--7498492	26	1.9	25	84	16	64	14	10	2	72	1.19
7498967--7499158	34	5.8	33	68	13	108	46	8	17	26	1.77
7498971--7499157	99	1.9	99	82	8	238	47	9	17	26	1.77
7498986--7499171	65	2.9	65	76	7	189	47	9	16	25	1.77
7499198--7499477	65	4.3	66	76	4	230	46	11	19	22	1.81
7499022--7499342	178	1.8	178	81	1	401	46	9	19	24	1.79
7506825--7506943	60	2.0	60	84	12	156	26	8	7	57	1.55
7507270--7507332	25	2.4	26	76	10	65	41	4	3	50	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129