genome.fa.s667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  1  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358--431	11	7.0	10	72	20	53	72	2	6	17	1.18
358--431	5	14.0	5	75	18	53	72	2	6	17	1.18
1573--1792	43	5.1	43	82	2	217	41	15	14	28	1.86
3592--3913	162	2.0	160	90	2	502	33	12	16	37	1.87
11727--11799	33	2.2	33	90	0	110	30	16	13	39	1.87
15999--16103	5	19.4	5	69	19	52	67	4	5	21	1.31
16052--16103	11	5.0	10	80	15	52	71	3	3	21	1.18
16937--16970	3	11.3	3	100	0	68	67	0	0	32	0.91
17862--17904	22	2.0	22	95	0	77	55	4	0	39	1.20
18881--18913	16	2.1	16	88	11	50	66	9	24	0	1.20
21410--21476	35	1.9	34	84	3	89	22	4	7	65	1.36
28485--28531	20	2.3	20	85	3	58	36	6	6	51	1.53
34621--34645	5	5.0	5	100	0	50	40	40	20	0	1.52
35460--35518	28	2.1	29	87	9	86	10	5	3	81	0.96
36666--36710	21	2.1	22	87	4	65	75	4	2	17	1.07
48854--49233	48	7.8	48	81	5	406	29	12	17	40	1.86
49151--49414	44	5.9	44	75	6	192	30	15	15	39	1.88
49531--49581	3	17.0	3	100	0	102	33	0	0	66	0.92
49583--49631	12	3.9	12	81	7	62	0	20	2	77	0.87
49746--49798	23	2.3	23	93	0	88	49	7	9	33	1.64
50731--50775	21	2.1	22	83	4	56	75	4	0	20	0.97
52995--53042	20	2.4	20	80	13	55	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52995--53066	14	5.2	14	73	14	51	43	0	1	55	1.08
53025--53081	29	2.0	29	85	0	78	47	0	1	50	1.11
53053--53104	22	2.5	22	93	6	90	50	0	0	50	1.00
53140--53222	32	2.4	33	80	13	96	21	10	39	27	1.87
53560--53607	2	24.5	2	80	4	53	50	4	2	43	1.33
55946--55972	2	13.5	2	100	0	54	51	0	0	48	1.00
56106--56152	22	2.2	21	88	3	67	48	4	4	42	1.42
56474--56528	24	2.3	25	75	18	62	54	1	1	41	1.21
72873--73439	281	2.0	281	97	0	1082	49	17	8	24	1.75
80066--80118	23	2.2	24	83	3	72	41	26	5	26	1.78
82521--82561	2	21.0	2	90	5	66	51	0	0	48	1.00
82951--82992	20	2.0	20	86	4	57	2	9	11	76	1.12
98603--98645	20	2.2	20	88	8	63	32	2	6	58	1.38
100616--100663	22	2.2	22	96	3	89	52	0	0	47	1.00
107681--107717	18	2.1	18	100	0	74	35	21	5	37	1.77
117879--117929	17	3.1	16	77	11	59	58	0	0	41	0.98
125224--125264	17	2.3	18	80	12	50	70	0	4	24	1.06
129435--129487	6	8.8	6	95	0	79	56	0	43	0	0.99
129435--129487	8	6.4	8	79	16	54	56	0	43	0	0.99
138451--138545	49	2.0	48	91	4	156	58	6	15	18	1.58
142933--142971	21	1.9	20	94	5	69	43	2	5	48	1.38
144437--144468	2	16.5	2	93	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148788--148849	27	2.2	28	80	2	81	69	1	0	29	0.98
149617--149642	12	2.2	12	100	0	52	23	0	7	69	1.14
158083--158112	2	15.0	2	100	0	60	50	0	0	50	1.00
171330--171356	8	3.4	8	100	0	54	25	11	0	62	1.28
172637--172666	8	3.8	8	100	0	60	36	0	0	63	0.95
175178--175208	16	1.9	16	93	0	53	45	29	6	19	1.75
186839--186871	2	16.5	2	100	0	66	48	0	0	51	1.00
187398--187486	45	1.9	47	88	4	137	37	10	7	44	1.67
192124--192280	52	3.0	52	87	3	210	37	9	27	25	1.87
193647--193685	3	13.0	3	94	0	60	38	0	28	33	1.57
195775--195803	2	14.5	2	100	0	58	51	0	0	48	1.00
198059--198096	19	2.1	18	90	5	58	50	0	0	50	1.00
200640--201881	315	4.0	315	95	3	2135	41	5	7	45	1.54
201692--201728	19	1.9	19	88	0	56	43	0	0	56	0.99
200640--201881	628	2.0	618	92	5	2095	41	5	7	45	1.54
201881--201940	21	2.8	22	73	12	63	53	0	0	46	1.00
201919--201989	32	2.3	30	80	4	79	54	5	1	38	1.33
217651--217676	13	2.0	13	100	0	52	30	7	0	61	1.24
218052--218086	3	11.7	3	87	0	52	28	2	2	65	1.21
218459--218488	2	15.0	2	92	0	51	46	0	0	53	1.00
238375--238582	103	2.0	103	92	1	346	45	12	12	29	1.79
245290--245320	10	3.0	10	95	4	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245651--245696	24	1.9	24	82	8	58	60	4	10	23	1.47
254313--254495	64	2.9	64	100	0	366	36	4	37	21	1.74
256924--256952	13	2.1	14	93	6	51	75	0	24	0	0.80
258020--258049	15	1.9	16	93	6	53	13	10	6	70	1.34
258262--258301	16	2.7	14	82	14	53	57	0	0	42	0.98
263352--263407	23	2.7	21	79	20	64	26	5	3	64	1.32
266059--266129	31	2.3	31	82	0	88	46	1	4	47	1.30
267109--267201	30	3.0	31	80	12	95	50	1	0	48	1.07
274224--274253	3	10.0	3	100	0	60	33	0	0	66	0.92
275592--275638	18	2.7	18	80	9	53	63	0	4	31	1.13
275894--276279	192	2.0	193	92	2	641	37	11	13	37	1.82
276731--276776	13	3.7	12	83	11	56	84	6	2	6	0.84
287833--288393	45	12.0	47	89	5	747	26	14	24	34	1.93
287841--288395	48	11.9	45	89	6	727	26	14	25	34	1.93
296098--296147	2	25.0	2	95	0	91	48	0	52	0	1.00
308395--308433	12	3.1	12	82	13	51	53	0	0	46	1.00
309940--309997	29	2.0	29	86	6	82	41	0	3	55	1.17
313123--313166	19	2.2	19	84	8	52	61	9	27	2	1.38
326413--326815	45	8.9	45	96	3	720	25	13	26	34	1.92
326406--326816	136	3.0	137	94	3	740	26	12	26	34	1.92
344167--344211	19	2.4	19	81	7	56	35	8	2	53	1.45
348122--348179	29	2.0	29	83	6	73	39	0	5	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351307--351350	19	2.2	19	84	8	52	61	9	27	2	1.38
374987--375016	2	15.0	2	100	0	60	50	0	0	50	1.00
384337--384375	16	2.3	18	86	8	55	51	5	0	43	1.24
387205--387257	23	2.2	25	80	12	67	54	0	0	45	0.99
387308--387357	12	4.1	12	84	2	64	58	2	0	40	1.10
387305--387357	24	2.3	23	93	3	88	58	1	0	39	1.09
392772--392806	9	3.9	9	88	0	52	37	0	0	62	0.95
392772--392815	18	2.3	19	84	7	54	40	0	0	59	0.98
392818--392853	15	2.3	16	90	4	56	33	0	0	66	0.92
393202--393244	14	3.1	14	77	9	52	60	0	0	39	0.97
395352--395394	21	2.0	23	86	9	63	62	0	4	32	1.15
395845--395876	15	2.1	15	94	5	55	75	0	0	25	0.81
396261--396307	24	2.0	24	86	0	67	63	2	4	29	1.25
396389--396454	32	2.1	31	88	2	96	51	0	1	46	1.10
400260--400338	40	2.0	40	89	0	122	26	11	17	44	1.83
401896--401933	13	2.8	14	84	8	60	63	7	5	23	1.42
404278--404334	29	2.0	29	89	0	87	49	1	15	33	1.55
404996--405041	21	2.2	21	84	7	58	78	0	21	0	0.76
410399--410435	17	2.1	18	90	5	58	8	16	5	70	1.30
411114--411144	2	15.5	2	93	0	53	51	3	0	45	1.17
412739--412783	23	1.9	24	81	4	56	26	11	0	62	1.29
415182--415227	21	2.2	21	84	0	56	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424393--424459	33	2.0	33	85	5	89	52	0	1	46	1.09
441225--441268	18	2.5	18	75	17	56	54	0	0	45	0.99
443628--443668	20	2.0	21	86	13	59	53	0	2	43	1.13
451703--451730	2	14.0	2	100	0	56	50	0	0	50	1.00
454573--454627	24	2.2	24	81	12	76	30	0	1	67	1.01
454604--454634	15	2.0	16	93	6	55	35	0	0	64	0.94
461007--461050	23	1.9	23	85	0	61	31	0	6	61	1.22
463924--463962	20	2.0	20	94	0	69	25	7	7	58	1.52
463961--464005	14	3.1	14	87	6	63	35	0	2	62	1.08
465077--465488	204	2.0	204	100	0	824	36	20	13	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126