genome.fa.s667.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  66  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13432588--13432638	25	2.0	27	92	7	88	0	0	15	84	0.63
13433248--13433304	23	2.5	23	83	8	64	42	7	3	47	1.47
13443363--13443398	18	1.9	19	94	5	65	11	5	5	77	1.10
13448863--13448912	14	3.6	14	75	5	57	62	0	0	38	0.96
13449064--13449098	16	2.2	17	90	10	56	65	0	5	28	1.15
13451115--13451407	157	1.8	158	86	5	430	29	19	15	35	1.93
13462374--13462399	2	13.0	2	100	0	52	50	0	0	50	1.00
13470100--13470140	22	1.9	21	90	5	64	41	0	0	58	0.98
13470880--13470913	13	2.6	13	90	0	50	70	0	0	29	0.87
13471823--13471914	30	3.1	29	78	12	105	38	5	2	54	1.36
13471958--13472004	22	2.1	22	84	7	60	59	2	2	36	1.21
13475301--13475514	75	2.9	75	86	0	266	28	14	22	33	1.94
13477245--13477302	28	2.1	28	90	0	89	34	10	10	44	1.73
13482128--13482180	15	3.3	15	73	14	52	43	3	0	52	1.19
13483316--13483361	23	2.0	22	84	12	58	36	0	2	60	1.09
13483542--13483603	21	3.1	21	79	6	58	56	1	0	41	1.09
13485079--13485126	15	3.6	14	71	23	50	64	0	8	27	1.22
13485079--13485126	24	1.9	26	87	8	73	64	0	8	27	1.22
13485114--13485155	22	1.9	22	85	9	59	64	2	0	33	1.07
13491348--13491524	69	2.6	69	90	0	273	18	14	35	31	1.91
13495374--13495413	18	2.3	18	86	4	55	72	5	22	0	1.04
13500900--13500947	20	2.5	20	76	10	55	35	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13501054--13501104	21	2.5	21	84	9	61	45	1	1	50	1.24
13502703--13502758	22	2.6	21	78	10	60	46	0	0	53	1.00
13502948--13502976	6	4.8	6	100	0	58	17	34	17	31	1.93
13503944--13503968	13	1.9	13	100	0	50	0	8	0	92	0.40
13505725--13505779	2	28.0	2	88	3	67	49	5	1	43	1.36
13514398--13514433	15	2.4	15	90	0	54	66	0	2	30	1.06
13514978--13515024	24	2.0	24	88	8	71	70	2	10	17	1.26
13514978--13515038	22	2.8	22	81	13	72	70	1	11	16	1.24
13520764--13520887	42	3.0	41	79	10	108	50	1	0	46	1.16
13521541--13521583	17	2.4	18	76	7	52	46	2	0	51	1.13
13521567--13521680	42	2.7	41	82	15	119	50	0	2	46	1.21
13524616--13524653	2	19.0	2	94	0	67	0	47	0	52	1.00
13524653--13524683	2	15.5	2	100	0	62	48	0	0	51	1.00
13525917--13525958	21	2.0	21	100	0	84	19	23	4	52	1.65
13527021--13527050	2	15.0	2	100	0	60	50	0	0	50	1.00
13527029--13527089	25	2.3	26	83	5	79	42	3	0	54	1.17
13533585--13533655	32	2.2	32	85	2	90	52	0	0	47	1.00
13535886--13535911	13	2.0	13	100	0	52	69	0	0	30	0.89
13535957--13536012	22	2.5	22	75	13	60	50	0	0	50	1.00
13545529--13545554	2	13.0	2	100	0	52	50	0	0	50	1.00
13554970--13555012	12	3.7	12	78	6	52	53	0	0	46	1.00
13555473--13555526	18	3.1	18	72	20	51	64	3	0	31	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13557304--13557530	116	1.9	117	91	2	368	54	9	3	32	1.51
13557351--13557532	58	3.1	56	65	20	131	56	9	4	30	1.51
13558003--13558381	196	1.9	194	95	1	677	37	7	11	44	1.68
13562084--13562108	9	2.8	9	100	0	50	36	0	0	64	0.94
13563133--13563175	10	4.4	9	80	13	50	34	0	0	65	0.93
13563133--13563175	20	2.2	19	91	4	68	34	0	0	65	0.93
13566323--13566371	22	2.2	23	81	3	55	48	2	4	44	1.33
13569846--13569953	11	9.5	11	65	17	51	43	0	0	55	1.06
13569905--13569953	5	8.8	6	82	13	61	34	0	0	65	0.93
13569846--13569963	27	4.2	27	72	12	94	44	0	0	54	1.12
13570277--13570307	11	2.8	11	100	0	62	51	0	0	48	1.00
13570616--13570659	20	2.3	19	92	4	70	31	0	0	68	0.90
13570616--13570661	10	4.7	10	81	5	58	34	0	0	65	0.93
13570785--13570828	20	2.2	20	92	4	72	56	4	0	38	1.20
13572314--13572384	23	3.0	23	80	10	81	60	0	0	39	0.97
13572325--13572373	19	2.5	20	74	12	57	63	0	0	36	0.95
13572348--13572427	14	5.4	14	72	20	56	66	3	1	28	1.17
13572319--13572427	10	10.5	10	69	17	62	64	2	0	32	1.14
13572378--13572437	21	2.9	21	80	12	61	65	5	1	28	1.23
13578497--13578531	2	17.5	2	100	0	70	51	0	0	48	1.00
13578764--13578807	21	2.1	20	84	16	54	47	0	2	50	1.13
13579444--13579536	31	3.0	31	83	7	102	47	1	1	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13579465--13579546	31	2.7	31	75	7	80	53	0	0	46	1.00
13579507--13579582	20	4.0	20	70	16	63	53	0	0	46	1.00
13579507--13579596	29	3.2	28	73	17	71	52	1	0	46	1.07
13583265--13583342	28	2.9	28	79	5	81	46	3	1	48	1.28
13585044--13585080	13	2.8	13	91	0	56	70	2	2	24	1.14
13585435--13585466	2	16.0	2	100	0	64	50	0	0	50	1.00
13586287--13586316	15	2.0	15	100	0	60	33	26	0	40	1.57
13586320--13586347	2	14.0	2	100	0	56	50	0	0	50	1.00
13591684--13591752	36	1.9	36	85	5	95	43	2	0	53	1.15
13609133--13609182	21	2.4	21	96	0	91	32	14	20	34	1.92
13625421--13625503	45	1.9	42	82	7	103	39	2	6	51	1.39
13625518--13625560	22	1.9	23	90	4	70	39	2	0	58	1.11
13626588--13626623	18	1.9	18	88	5	54	41	0	5	52	1.24
13626646--13626693	18	2.8	17	81	9	55	43	4	2	50	1.33
13630378--13630407	2	15.0	2	100	0	60	50	0	0	50	1.00
13631696--13631731	2	18.0	2	100	0	72	50	0	0	50	1.00
13632152--13632193	22	1.9	22	85	9	59	21	2	2	73	1.06
13632525--13632565	20	2.0	20	90	0	64	53	21	7	17	1.67
13633247--13633279	16	2.1	16	88	5	50	69	0	6	24	1.10
13635183--13635251	32	2.2	32	86	2	95	52	0	0	47	1.00
13635180--13635250	18	3.8	19	71	14	67	50	0	0	49	1.00
13637961--13638015	24	2.5	21	80	16	58	41	1	1	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13638008--13638076	24	2.9	24	78	6	79	31	2	1	63	1.18
13638012--13638067	13	4.5	13	73	13	55	28	3	1	66	1.19
13638453--13638507	22	2.3	23	81	15	67	67	3	0	29	1.08
13640010--13640069	25	2.5	24	71	15	59	38	0	1	60	1.07
13647553--13647583	15	2.1	15	100	0	62	61	25	12	0	1.32
13657070--13657112	2	21.5	2	100	0	86	51	0	0	48	1.00
13659522--13659643	63	2.0	63	90	3	194	40	9	13	36	1.77
13661789--13661852	7	8.0	7	76	23	56	76	0	0	23	0.79
13661791--13661849	17	3.4	17	71	23	52	76	0	0	23	0.79
13661787--13661852	25	2.7	25	86	6	91	75	0	0	24	0.80
13661909--13661975	2	35.5	2	80	16	81	50	1	0	47	1.10
13663996--13664051	24	2.3	23	85	11	69	32	0	0	67	0.91
13664049--13664099	18	3.1	17	80	8	61	45	0	0	54	0.99
13664042--13664093	17	3.1	17	83	10	72	46	0	0	53	1.00
13663989--13664087	39	2.5	39	79	6	112	40	0	0	59	0.97
13664047--13664099	15	3.3	15	78	17	54	43	0	0	56	0.99
13664047--13664102	17	3.7	15	80	19	55	44	0	0	55	0.99
13667577--13667613	18	2.1	18	89	0	56	21	13	13	51	1.75
13680728--13680758	2	15.5	2	100	0	62	51	0	0	48	1.00
13683015--13683136	63	2.0	63	90	3	194	40	9	13	36	1.77
13685275--13685346	26	2.7	26	87	12	94	69	0	0	30	0.89
13691032--13691068	18	2.1	18	94	0	65	24	13	10	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13694094--13694131	2	19.0	2	94	0	67	47	0	2	50	1.15
13694415--13694449	18	1.9	18	94	0	61	25	5	5	62	1.40
13695659--13695714	22	2.5	22	85	5	69	41	12	3	42	1.60
13695679--13695770	22	4.2	22	78	0	94	36	10	2	50	1.50
13695649--13695783	44	3.1	44	78	4	121	37	10	4	48	1.58
13695806--13695866	11	5.5	10	78	19	50	36	0	4	59	1.19
13695888--13695944	22	2.6	22	88	0	87	40	8	0	50	1.33
13695893--13695944	11	4.7	11	78	0	59	40	5	0	53	1.25
13696131--13696363	47	4.8	47	72	8	153	35	9	17	37	1.82
13696194--13696371	51	3.6	50	76	6	182	36	10	15	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126