genome.fa.s667.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  49  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9623830--9623980	30	5.1	28	69	13	88	37	2	5	53	1.39
9623830--9623979	60	2.5	58	76	7	142	37	2	6	54	1.39
9626324--9626368	22	2.1	21	83	4	54	17	8	4	68	1.32
9627901--9627948	16	2.9	17	76	17	55	29	10	8	52	1.65
9628102--9628136	18	2.0	18	88	5	54	54	0	8	37	1.31
9634827--9634864	15	2.4	16	86	4	60	68	7	0	23	1.16
9648945--9649039	31	2.9	32	70	19	88	44	14	20	21	1.87
9648946--9649097	65	2.3	65	81	2	171	45	14	20	19	1.85
9649049--9649170	65	1.9	65	84	0	163	48	13	16	22	1.80
9649078--9649213	65	2.1	65	83	0	164	47	13	17	22	1.82
9658199--9658231	16	2.1	16	94	0	57	33	18	18	30	1.94
9659208--9659297	29	3.1	29	80	1	99	54	4	8	32	1.51
9659410--9659451	11	3.9	11	87	3	59	40	0	2	57	1.12
9659539--9659577	6	6.3	6	83	16	53	46	0	0	53	1.00
9659543--9659599	25	2.3	24	82	8	62	50	0	0	49	1.00
9659735--9659768	18	2.0	17	88	11	52	47	2	8	41	1.50
9661112--9661141	2	15.0	2	92	0	51	50	3	0	46	1.18
9668950--9669046	45	2.2	45	90	0	158	35	22	8	34	1.84
9674383--9674434	17	2.9	17	82	5	50	26	3	0	69	1.06
9674414--9674452	13	3.0	13	80	0	51	41	0	0	58	0.98
9676270--9676345	30	2.5	30	86	0	116	44	7	2	44	1.47
9676329--9676362	12	2.8	12	100	0	68	52	8	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9676375--9676447	29	2.5	30	80	10	80	52	2	9	35	1.49
9677367--9677407	21	1.9	22	85	5	57	43	12	2	41	1.55
9677480--9678126	217	3.0	213	81	6	680	25	10	10	53	1.68
9681215--9681246	2	16.0	2	93	0	55	50	3	0	46	1.17
9681428--9682660	609	2.0	614	90	3	1942	39	11	9	39	1.74
9682753--9682779	12	2.2	12	100	0	54	22	14	0	62	1.31
9683542--9683732	78	2.4	77	76	15	194	59	7	7	24	1.52
9683661--9683799	66	2.1	67	82	7	169	55	8	10	25	1.62
9683817--9683846	13	2.4	13	94	5	53	46	0	0	53	1.00
9692829--9692967	66	2.1	67	90	1	226	22	10	21	46	1.81
9693006--9693053	25	2.0	24	88	8	71	27	8	18	45	1.78
9696407--9696542	66	2.0	67	92	1	229	22	8	20	48	1.77
9701448--9701558	24	4.8	21	71	24	64	50	3	5	40	1.43
9701473--9701766	112	2.6	112	90	5	448	51	3	8	37	1.47
9701473--9701678	21	9.1	23	68	23	84	51	2	8	37	1.45
9701582--9701723	24	6.2	22	67	22	78	54	2	7	35	1.41
9704167--9704196	7	4.3	7	95	0	51	26	3	0	70	1.03
9705474--9705526	3	17.7	3	96	0	97	33	0	1	64	1.05
9705914--9705938	7	3.6	7	100	0	50	84	0	0	16	0.63
9706669--9706709	3	13.7	3	94	0	73	68	2	0	29	1.03
9708303--9708363	31	2.0	31	90	3	97	59	4	6	29	1.44
9710494--9710650	52	3.0	51	87	3	215	25	27	8	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9710677--9710705	11	2.6	11	100	0	58	51	27	0	20	1.47
9711312--9711342	15	2.0	16	93	6	55	38	0	9	51	1.35
9720051--9720089	11	3.6	11	86	6	53	76	5	7	10	1.13
9721594--9721638	23	2.0	23	83	8	58	37	8	17	35	1.81
9724185--9724222	19	2.1	18	90	5	58	28	13	2	55	1.51
9725914--9726039	61	2.0	62	90	4	202	29	14	13	42	1.83
9730413--9730698	63	4.7	60	69	11	172	31	16	11	40	1.84
9730429--9730541	57	1.9	59	82	7	142	29	15	13	42	1.84
9730230--9730559	177	1.9	180	81	7	413	32	15	13	38	1.87
9730428--9730763	187	1.8	183	83	6	444	32	16	12	39	1.85
9739024--9739189	56	3.0	55	80	11	171	51	9	5	33	1.58
9744694--9744745	27	1.9	27	88	0	77	34	0	17	48	1.48
9745954--9746018	18	3.6	18	76	12	69	50	0	0	49	1.00
9749649--9749690	19	2.2	20	83	12	52	59	2	2	35	1.23
9755584--9755619	12	3.0	12	91	0	63	38	25	11	25	1.88
9758256--9758381	61	2.0	62	90	4	202	29	14	13	42	1.83
9762385--9762429	23	2.0	23	82	8	56	55	11	15	17	1.68
9762758--9763072	60	5.2	61	71	10	180	32	16	11	39	1.85
9762575--9762906	179	1.9	180	80	6	397	32	15	13	38	1.86
9762758--9763138	184	2.1	182	80	6	441	33	16	12	38	1.86
9771029--9771067	20	1.9	21	89	5	62	64	2	33	0	1.08
9771295--9771360	29	2.3	29	79	10	73	24	1	4	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9771363--9771521	56	2.9	55	80	7	164	51	9	5	33	1.58
9772256--9772421	83	2.0	83	92	2	280	37	15	13	33	1.86
9777077--9777128	27	1.9	27	88	0	77	34	0	17	48	1.48
9778251--9778304	18	2.9	18	81	10	65	50	0	0	50	1.00
9781953--9781995	20	2.1	21	84	16	56	60	2	2	34	1.22
9783043--9783095	23	2.3	23	100	0	106	18	37	7	35	1.80
9786874--9787337	246	1.9	246	87	3	684	27	18	10	43	1.82
9787842--9787877	12	3.0	12	91	0	63	38	25	11	25	1.88
9788859--9788897	20	2.0	20	89	0	60	38	0	7	53	1.30
9799226--9799271	18	2.6	17	80	6	56	73	6	2	17	1.14
9801779--9801808	15	2.0	15	100	0	60	26	13	6	53	1.64
9804634--9804685	27	1.9	27	84	0	68	23	21	13	42	1.88
9805253--9805324	35	2.1	35	84	10	94	25	5	25	44	1.75
9806594--9806630	2	19.0	2	88	5	58	51	2	0	45	1.15
9806911--9806940	8	3.8	8	95	0	51	0	0	13	86	0.57
9822106--9822428	160	2.0	160	99	0	637	22	17	22	36	1.95
9831645--9831682	17	2.2	17	90	0	58	78	0	15	5	0.91
9835214--9835254	13	3.2	13	86	10	50	36	9	7	46	1.65
9838606--9838659	20	2.6	21	79	8	65	27	22	5	44	1.75
9838619--9838657	20	1.9	21	94	5	71	33	20	5	41	1.74
9842855--9842881	2	13.5	2	100	0	54	51	0	0	48	1.00
9848792--9848843	18	2.8	18	77	13	61	19	13	28	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9849842--9849876	3	11.7	3	87	0	52	34	2	2	60	1.26
9853856--9853969	38	3.0	39	79	7	119	23	10	21	43	1.84
9861154--9861417	143	1.8	143	80	3	316	42	12	14	31	1.81
9862218--9862249	6	5.7	6	96	3	50	0	0	9	90	0.45
9862440--9862557	60	2.0	60	98	0	227	55	4	4	36	1.39
9863083--9863227	52	2.8	51	78	6	150	37	20	7	35	1.81
9882572--9882610	17	2.3	17	86	8	53	30	7	23	38	1.83
9884977--9885042	34	1.9	35	87	9	100	34	16	12	36	1.86
9884975--9885051	35	2.2	35	81	9	95	33	14	14	37	1.86
9885131--9885173	18	2.4	18	88	7	61	20	20	11	46	1.82
9885221--9885249	9	3.3	9	90	9	51	72	0	0	27	0.85
9885614--9885757	69	2.1	70	84	3	184	34	15	17	32	1.91
9885927--9886034	54	2.0	55	83	5	139	34	10	17	37	1.84
9886060--9886110	5	10.0	5	85	12	52	82	15	0	1	0.76
9886058--9886109	11	4.6	11	81	9	52	84	13	0	1	0.70
9889314--9889344	2	15.5	2	100	0	62	48	0	0	51	1.00
9889556--9889608	28	1.9	27	85	11	72	47	5	5	41	1.51
9891184--9891226	18	2.4	18	84	3	61	18	0	4	76	0.95
9896094--9896492	143	2.8	144	78	7	377	43	12	12	32	1.78
9898247--9898325	38	2.1	38	88	4	117	31	16	8	43	1.79
9913892--9913942	26	2.0	26	88	0	75	54	7	15	21	1.66
9914077--9914288	106	2.0	104	88	3	311	33	9	8	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9915421--9915566	34	4.3	34	74	3	123	39	7	10	43	1.67
9940526--9940551	13	2.0	13	100	0	52	53	7	7	30	1.57
9942154--9942200	25	2.0	23	87	8	67	4	10	6	78	1.06
9942841--9942880	20	2.0	20	85	9	55	55	2	10	32	1.47
9946133--9946335	106	1.9	106	83	2	264	29	18	17	33	1.94
9963266--9963321	27	2.1	27	93	0	94	48	26	5	19	1.70
9963764--9963805	22	1.9	22	90	9	68	47	7	9	35	1.64
9967677--9967719	22	2.0	22	90	0	68	48	11	6	32	1.66
9971249--9971283	17	2.1	17	89	5	54	60	5	2	31	1.35
9973011--9973549	143	3.8	141	80	8	518	33	12	11	42	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126