genome.fa.s667.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  35  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7289995--7290041	25	1.9	24	82	4	58	55	10	10	23	1.65
7291064--7291175	20	5.9	19	66	23	58	47	10	5	36	1.61
7291108--7291173	22	3.1	22	75	12	66	50	10	4	34	1.58
7291057--7291159	53	2.0	50	85	9	136	49	9	4	35	1.57
7291277--7291318	15	2.7	16	77	7	50	54	9	4	30	1.53
7291516--7291612	24	3.7	24	71	19	77	54	11	4	29	1.54
7291526--7291644	36	3.8	32	69	21	92	53	11	4	30	1.56
7291608--7291669	24	2.6	24	94	0	106	56	11	4	27	1.54
7291516--7291678	60	2.8	59	84	7	210	54	12	4	28	1.58
7291579--7291648	36	1.9	36	94	0	122	55	10	5	28	1.55
7291764--7291806	21	2.0	21	86	0	59	74	9	2	13	1.16
7292304--7292354	25	2.0	25	88	0	75	47	23	3	25	1.69
7293015--7293054	13	3.2	13	82	3	55	65	10	0	25	1.24
7292993--7293038	21	2.1	21	84	4	56	65	10	2	21	1.35
7295252--7295330	41	1.9	41	94	5	142	34	15	18	31	1.92
7310457--7310509	24	2.2	25	83	6	65	52	1	3	41	1.30
7316199--7316229	3	10.3	3	100	0	62	67	0	0	32	0.91
7320635--7320664	16	1.9	16	93	6	53	10	3	20	66	1.35
7327430--7327474	23	2.0	23	83	16	58	68	11	4	15	1.34
7327847--7327900	23	2.3	23	84	9	65	24	0	9	66	1.20
7329642--7329708	12	4.8	13	76	20	57	56	1	0	41	1.08
7329660--7329863	31	6.1	31	70	21	114	54	2	0	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7329739--7329780	11	3.8	11	81	12	50	50	0	0	50	1.00
7329816--7329904	26	3.5	26	74	13	69	56	2	1	40	1.19
7329847--7329914	36	1.9	35	87	3	100	58	0	2	38	1.13
7329644--7329887	15	16.2	15	75	13	173	55	2	0	41	1.19
7329912--7330027	15	7.2	15	68	18	56	46	2	0	50	1.21
7329997--7330060	26	2.5	26	90	5	96	50	1	0	48	1.10
7329981--7330060	9	9.3	9	69	18	55	47	1	0	51	1.08
7332259--7332372	54	2.1	54	81	8	131	55	7	7	30	1.53
7332340--7332415	27	2.8	27	93	0	125	55	6	5	32	1.48
7334552--7334598	2	23.5	2	91	0	76	46	4	0	48	1.21
7334833--7334891	18	3.0	21	73	16	63	64	1	0	33	1.04
7334848--7334903	21	2.6	21	80	5	58	69	0	0	30	0.89
7336048--7336089	21	2.0	21	85	4	57	47	0	0	52	1.00
7336772--7336801	15	2.0	15	93	0	51	26	6	10	56	1.57
7344875--7344938	16	3.9	16	73	4	56	40	0	0	59	0.97
7346606--7346638	16	2.1	17	88	11	52	69	3	0	27	1.03
7347769--7347816	26	1.9	24	84	16	62	77	6	10	6	1.13
7352367--7352399	17	1.9	17	93	0	57	75	3	3	18	1.06
7353577--7353634	25	2.5	22	74	20	55	48	5	8	37	1.56
7357403--7357460	22	2.6	22	83	5	73	25	15	20	37	1.92
7357424--7357471	22	2.2	22	85	7	62	22	16	22	37	1.94
7357927--7357994	22	3.1	22	84	0	82	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7357906--7357999	44	2.1	44	82	3	109	28	22	18	30	1.97
7358156--7358334	95	1.9	95	81	2	216	35	14	16	33	1.89
7370796--7370841	18	2.6	18	86	10	60	82	0	2	15	0.76
7371784--7371854	21	3.4	21	84	9	83	35	7	15	42	1.74
7372197--7372451	42	6.1	42	90	1	361	23	10	18	46	1.81
7382585--7382635	16	3.1	16	71	15	50	50	5	3	39	1.45
7386518--7386554	2	18.5	2	100	0	74	0	48	0	51	1.00
7395232--7395291	14	4.3	14	86	0	75	43	1	3	51	1.28
7395232--7395291	6	10.0	6	90	0	75	43	1	3	51	1.28
7396228--7396258	15	2.1	15	93	0	53	41	19	6	32	1.77
7396240--7396310	31	2.3	31	82	4	90	45	15	4	35	1.66
7406519--7406554	15	2.4	15	95	0	63	2	13	44	38	1.59
7406519--7406558	5	8.0	5	82	0	53	2	15	42	40	1.60
7406678--7406778	53	1.9	52	95	2	184	27	31	10	29	1.91
7413217--7413248	16	2.1	16	94	5	57	78	6	0	15	0.95
7413645--7413691	23	2.0	23	100	0	94	38	17	12	31	1.87
7414207--7414234	3	9.3	3	100	0	56	67	0	0	32	0.91
7416229--7416322	39	2.4	40	82	5	102	54	21	3	21	1.59
7416266--7416322	13	4.2	13	81	4	69	56	22	3	17	1.56
7416272--7416330	26	2.3	26	82	5	66	52	28	3	15	1.58
7419985--7420055	33	2.2	33	86	0	97	35	19	16	28	1.94
7419996--7420166	33	5.2	33	74	9	154	32	16	19	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7420003--7420166	65	2.5	65	78	9	183	32	17	20	29	1.95
7420641--7420676	18	2.0	18	89	10	56	77	11	5	5	1.10
7420982--7421030	3	16.3	3	100	0	98	67	0	0	32	0.91
7422897--7422952	3	18.7	3	83	7	69	69	0	1	28	0.98
7423176--7423226	21	2.5	21	84	9	70	41	29	7	21	1.81
7423858--7423892	17	2.1	17	89	5	54	42	5	5	45	1.51
7427330--7427657	57	5.7	57	89	3	480	35	13	6	44	1.70
7427328--7427657	117	2.9	113	88	6	495	35	13	6	44	1.70
7428655--7428700	19	2.4	19	82	7	58	63	6	8	21	1.46
7428743--7428838	31	3.1	30	72	8	77	66	5	1	27	1.19
7428826--7428916	16	5.4	17	72	18	59	67	4	3	25	1.25
7428905--7428956	23	2.2	25	77	19	58	73	7	3	15	1.21
7428913--7428955	23	1.9	23	85	4	61	74	6	4	13	1.19
7429010--7429197	94	2.0	94	97	0	358	32	25	15	26	1.95
7429202--7429268	1	67.0	1	75	0	62	4	1	5	88	0.70
7429209--7429269	24	2.6	23	82	15	79	4	1	6	86	0.74
7429202--7429266	13	4.9	13	83	7	78	4	1	6	87	0.71
7429275--7429386	43	2.6	43	90	4	165	34	25	16	22	1.95
7429437--7429500	32	2.0	32	90	0	101	34	25	20	20	1.96
7429510--7429546	18	2.1	18	100	0	74	29	27	27	16	1.97
7429469--7429586	60	2.0	60	93	0	200	33	23	20	22	1.97
7429333--7429585	134	1.9	134	86	9	363	33	25	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7430856--7430901	24	1.9	24	86	8	67	8	15	0	76	1.02
7438137--7438177	22	1.9	21	85	5	55	48	2	0	48	1.14
7438666--7438699	3	11.7	3	93	6	61	64	0	0	35	0.94
7438666--7438706	11	3.6	12	87	9	59	65	0	0	34	0.93
7439304--7439374	30	2.5	27	78	17	74	57	1	0	40	1.07
7439320--7439387	16	4.3	16	81	10	70	57	0	0	42	0.98
7439302--7439363	13	4.5	13	75	16	54	56	1	0	41	1.09
7439374--7439431	21	2.9	21	78	14	68	53	1	0	44	1.10
7439327--7439445	26	4.7	26	68	23	76	54	0	0	44	1.05
7439421--7439543	18	6.9	18	67	25	75	54	3	1	40	1.26
7439424--7439521	16	6.1	16	80	8	83	53	4	2	40	1.32
7439451--7439518	31	2.2	31	91	0	109	54	5	1	38	1.34
7439469--7439574	31	3.3	31	77	14	83	57	1	1	38	1.20
7439314--7439560	23	10.8	23	65	21	103	53	2	1	42	1.21
7439505--7439570	34	1.9	35	87	9	100	57	0	3	39	1.14
7439504--7439552	26	1.9	26	91	4	82	57	0	0	42	0.99
7439609--7439675	16	4.1	17	70	16	61	47	0	0	52	1.00
7439645--7439715	25	2.8	24	84	16	90	49	1	0	49	1.09
7439652--7439715	26	2.5	26	90	5	96	50	1	0	48	1.10
7439564--7439707	15	9.2	16	66	24	67	47	2	0	49	1.18
7439637--7439715	7	9.3	9	69	21	55	48	1	0	50	1.08
7441884--7441910	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7441940--7442053	54	2.1	54	86	5	156	53	7	7	31	1.57
7442000--7442052	20	2.7	19	77	5	61	54	7	7	30	1.56
7442020--7442089	27	2.6	27	95	0	122	54	5	4	35	1.44
7444480--7444536	20	3.0	20	71	23	59	63	1	0	35	1.05
7444480--7444538	17	3.2	20	77	20	65	62	1	0	35	1.05
7445686--7445727	21	2.0	21	85	4	57	47	0	0	52	1.00
7456255--7456287	16	2.1	16	88	11	50	69	3	0	27	1.03
7457410--7457457	26	1.9	24	84	16	62	77	6	10	6	1.13
7461496--7461537	10	4.3	10	85	14	52	76	7	4	11	1.15
7461992--7462024	17	1.9	17	93	0	57	75	3	3	18	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126