genome.fa.s667.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  73  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14712953--14713023	28	2.7	26	83	14	83	47	2	2	46	1.31
14712983--14713229	124	2.0	123	96	0	458	38	5	1	54	1.32
14713991--14714034	22	2.0	22	86	0	61	40	0	2	56	1.11
14715250--14715288	19	2.0	20	85	5	53	48	0	5	46	1.24
14716926--14716969	10	4.5	10	81	13	56	65	2	0	31	1.05
14717284--14717315	17	2.0	17	88	11	50	28	0	0	71	0.86
14717432--14717459	2	14.0	2	100	0	56	50	0	0	50	1.00
14723505--14723556	24	2.2	24	77	19	56	61	0	0	38	0.96
14724273--14724309	19	1.9	19	88	0	56	29	2	0	67	1.04
14729067--14729173	33	3.2	33	76	10	108	33	25	17	23	1.96
14729079--14729191	33	3.3	33	88	3	154	34	27	15	22	1.95
14729461--14729595	33	4.1	33	78	7	112	31	30	16	22	1.95
14729623--14729698	33	2.3	33	81	0	80	34	27	17	21	1.95
14729707--14729799	33	2.8	33	79	9	109	30	22	22	24	1.99
14729835--14730041	66	3.1	65	81	2	243	32	24	20	22	1.98
14729829--14730041	99	2.2	99	84	3	268	31	23	21	23	1.98
14729829--14730043	33	6.5	33	80	4	202	31	24	20	23	1.98
14729829--14730083	33	7.8	32	74	12	153	31	23	20	24	1.98
14730519--14730547	14	2.1	14	100	0	58	31	13	20	34	1.92
14747793--14747857	29	2.3	29	75	2	69	49	3	4	43	1.39
14753306--14753336	3	10.7	3	93	6	55	32	0	0	67	0.91
14753298--14753335	14	2.7	14	92	8	60	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14754007--14754241	115	2.0	115	98	0	452	36	14	28	20	1.92
14754479--14754532	16	3.5	16	78	14	60	20	5	0	74	1.02
14754548--14755057	58	8.8	58	86	7	689	43	6	13	35	1.71
14755823--14755865	16	2.5	17	81	11	52	30	4	4	60	1.37
14757541--14757586	23	2.0	23	83	8	58	30	4	15	50	1.63
14759381--14759462	42	1.9	42	80	11	96	34	7	4	53	1.50
14759764--14759821	23	2.6	21	81	10	71	34	0	0	65	0.93
14759798--14759846	14	3.6	14	72	22	50	28	2	2	67	1.13
14759766--14759919	24	6.7	24	75	17	96	29	3	0	65	1.15
14759820--14759899	22	3.6	22	88	6	101	31	5	1	62	1.24
14759887--14759923	18	2.0	20	85	15	53	13	8	0	78	0.96
14760655--14760725	3	24.7	3	76	13	53	23	4	1	70	1.13
14760732--14761063	60	5.4	61	79	11	353	50	5	8	35	1.56
14762104--14762160	29	2.0	29	82	0	69	47	7	14	31	1.70
14763356--14763427	28	2.5	30	76	14	80	40	0	0	59	0.97
14763368--14763431	25	2.6	25	85	7	78	39	0	0	60	0.97
14763411--14763443	11	2.8	12	86	9	50	24	3	0	72	0.98
14763787--14763820	10	3.4	10	88	12	52	44	0	20	35	1.52
14764805--14764868	16	4.0	16	76	17	62	34	0	0	65	0.93
14764804--14764865	27	2.3	27	86	13	85	32	0	0	67	0.91
14764855--14764925	20	3.5	19	69	12	61	45	2	0	52	1.15
14764858--14764924	21	3.2	21	74	4	82	44	2	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14764888--14764934	24	2.0	23	84	12	60	46	0	0	53	1.00
14765331--14765357	3	9.0	3	100	0	54	0	33	0	66	0.92
14773073--14773131	12	4.7	12	78	17	66	32	0	0	67	0.91
14774460--14774499	20	2.0	20	90	0	62	50	0	0	50	1.00
14786121--14786180	31	1.9	31	89	0	93	26	25	13	35	1.93
14786457--14786495	20	2.0	20	89	0	60	53	5	0	41	1.23
14787371--14787456	42	2.0	42	86	0	118	20	23	31	24	1.98
14787665--14787714	24	2.1	24	100	0	100	20	22	8	50	1.74
14788143--14788734	299	2.0	299	91	0	970	41	12	9	36	1.75
14789975--14790008	17	1.9	17	88	5	50	8	20	14	55	1.65
14791752--14791803	21	2.5	21	90	6	79	50	0	0	50	1.00
14791752--14791803	22	2.5	22	93	6	90	50	0	0	50	1.00
14793630--14793734	52	2.0	52	100	0	210	41	5	9	42	1.61
14796225--14796276	20	2.5	20	75	6	50	28	1	3	65	1.21
14797228--14797270	21	2.1	20	86	4	59	55	0	2	41	1.12
14798223--14798257	16	2.4	14	90	9	52	62	0	0	37	0.95
14798234--14798281	17	2.7	18	78	12	55	66	0	0	33	0.92
14799893--14799931	18	2.1	19	90	4	62	35	10	2	51	1.50
14802284--14802309	2	13.0	2	100	0	52	50	0	0	50	1.00
14803808--14803859	22	2.4	21	75	12	52	50	0	1	48	1.12
14816032--14816067	17	2.1	17	94	0	63	58	0	2	38	1.13
14816529--14816587	30	2.0	30	90	9	95	30	0	8	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14821196--14821253	25	2.3	25	85	5	73	25	10	8	55	1.62
14821249--14821314	33	2.0	34	84	3	89	30	7	3	59	1.41
14821928--14821968	13	3.3	13	73	13	50	41	0	0	58	0.98
14821925--14821974	24	2.1	24	92	0	82	48	0	0	52	1.00
14833124--14833184	31	1.9	32	83	9	81	47	1	0	50	1.10
14834231--14834271	13	3.2	13	82	0	55	39	2	0	58	1.11
14834307--14834346	17	2.3	18	91	4	64	70	2	0	27	1.01
14834400--14834434	13	2.7	13	86	0	52	48	0	0	51	1.00
14837794--14837827	2	17.0	2	87	0	50	50	0	2	47	1.16
14840058--14840772	233	3.0	240	84	7	979	36	25	13	24	1.92
14847773--14847866	42	2.2	42	90	0	143	39	5	5	50	1.48
14850343--14850435	46	2.0	46	95	0	168	18	16	15	50	1.78
14851038--14851816	392	2.0	387	94	2	1373	22	15	17	44	1.87
14862097--14862131	2	18.0	2	88	5	54	51	2	0	45	1.16
14862381--14862442	31	2.0	31	84	6	81	40	8	8	43	1.64
14862446--14862486	8	5.2	8	85	2	57	58	0	0	41	0.98
14862450--14862500	26	2.0	24	85	7	66	60	0	0	39	0.97
14863362--14863395	4	8.8	4	87	6	52	0	26	0	73	0.83
14863363--14863412	7	7.0	7	82	17	59	0	28	0	72	0.86
14863363--14863412	23	2.3	23	86	10	70	0	28	0	72	0.86
14863541--14863590	23	2.2	23	88	0	73	52	6	10	32	1.59
14864508--14864546	19	2.0	19	85	5	51	69	7	0	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14871272--14871321	20	2.3	23	86	10	70	24	0	6	70	1.10
14872304--14872359	25	2.2	25	93	0	94	53	1	0	44	1.11
14872531--14872564	16	2.1	16	88	5	50	55	0	2	41	1.15
14872535--14872564	16	1.9	15	93	6	51	60	0	3	36	1.14
14872526--14872570	17	2.6	18	78	7	56	48	0	2	48	1.13
14878002--14878059	19	3.1	19	65	5	55	58	10	1	29	1.41
14878871--14878925	28	2.0	27	85	3	74	54	1	1	41	1.21
14878903--14878949	15	3.2	15	81	6	60	44	2	2	51	1.25
14883020--14883072	16	3.2	16	81	10	54	67	0	0	32	0.91
14883027--14883072	16	2.9	16	90	3	67	67	0	0	32	0.91
14883851--14883897	19	2.3	20	75	10	51	70	6	4	19	1.26
14887101--14887136	2	18.0	2	94	0	63	52	0	0	47	1.00
14888635--14888685	22	2.3	23	80	9	63	52	0	0	47	1.00
14903831--14903861	16	2.0	15	93	6	53	3	6	0	90	0.55
14903891--14903930	13	3.2	13	82	7	55	80	2	0	17	0.83
14908351--14908383	14	2.2	16	89	10	52	27	0	0	72	0.85
14909600--14909633	17	2.0	17	88	0	50	2	17	5	73	1.16
14919007--14919060	17	3.1	17	73	7	54	50	0	1	48	1.11
14920293--14920331	14	2.7	15	84	8	53	38	2	5	53	1.37
14926641--14926670	2	15.0	2	100	0	60	50	0	0	50	1.00
14932434--14932488	13	4.3	12	80	11	65	63	0	1	34	1.05
14932423--14932492	26	2.7	26	82	4	79	60	1	1	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14944150--14944187	10	3.5	11	86	13	53	42	0	0	57	0.98
14945460--14945517	18	3.3	19	81	11	54	67	0	0	32	0.91
14946046--14946089	21	2.0	22	82	4	54	45	2	2	50	1.27
14946901--14946967	26	2.6	27	84	11	79	67	0	2	29	1.06
14946922--14946958	19	2.0	18	89	5	56	72	0	0	27	0.84
14947568--14947597	15	2.1	14	93	6	51	23	0	0	76	0.78
14950319--14950375	30	1.9	30	86	13	82	35	5	0	59	1.20
14951177--14951381	109	1.9	110	89	1	322	40	15	12	31	1.85
14951823--14951869	18	2.7	17	78	15	51	53	8	0	38	1.32
14951841--14951878	18	2.1	18	95	0	67	52	7	0	39	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126