Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  85  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16896571--16896609
10
3.9
10
89
0
60
51
7
0
41
1.31
16898879--16898942
32
2.0
32
100
0
128
56
9
21
12
1.64
16903633--16903657
2
12.5
2
100
0
50
52
0
0
48
1.00
16908290--16908391
10
10.7
10
72
12
63
51
3
2
41
1.35
16908434--16908476
21
2.0
21
86
8
61
46
4
4
44
1.45
16908853--16908902
20
2.6
19
83
3
55
50
6
0
44
1.26
16909087--16909153
28
2.3
28
80
14
82
44
0
5
49
1.27
16909111--16909157
20
2.3
21
82
10
62
44
0
6
48
1.28
16910315--16910359
8
5.8
8
81
5
56
53
0
2
44
1.13
16910498--16910579
27
3.0
27
84
12
89
53
2
2
41
1.27
16913082--16913111
13
2.2
14
94
5
53
33
0
6
60
1.23
16913081--16913113
14
2.3
15
85
15
52
33
0
6
60
1.21
16915561--16915595
18
1.9
19
88
11
56
51
0
0
48
1.00
16916502--16916533
15
2.1
15
94
0
55
34
3
0
62
1.11
16917610--16917654
6
7.5
6
89
0
63
82
2
11
4
0.91
16917610--16917672
30
2.1
30
85
11
85
80
1
7
9
0.95
16917622--16917672
18
2.8
18
80
14
61
82
0
5
11
0.83
16917948--16917988
3
13.7
3
94
0
73
63
0
2
34
1.08
16918110--16918153
3
14.7
3
95
0
79
68
29
0
2
1.02
16925750--16925782
14
2.4
14
95
5
59
27
0
0
72
0.85
16927571--16927626
24
2.3
24
79
11
62
73
1
8
16
1.17
16930046--16930076
16
1.9
16
93
0
53
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16935939--16935969
1
31.0
1
100
0
62
0
0
0
100
0.00
16943972--16944002
2
15.5
2
100
0
62
51
0
0
48
1.00
16946355--16946607
83
3.0
82
68
13
204
39
17
18
24
1.92
16947234--16947272
19
2.1
18
85
4
51
48
0
0
51
1.00
16948262--16948306
2
23.0
2
81
4
56
42
0
2
55
1.12
16949346--16949402
17
3.0
20
70
15
66
50
3
1
43
1.29
16954606--16954639
10
3.4
10
83
0
50
50
8
0
41
1.34
16954606--16954649
20
2.2
20
95
0
79
50
9
2
38
1.47
16954606--16954746
20
7.2
20
67
20
73
53
9
2
33
1.49
16954724--16954791
32
2.1
32
86
8
93
57
7
1
33
1.36
16954755--16954814
24
2.6
23
80
12
61
58
3
6
31
1.40
16955371--16955422
24
2.1
26
82
7
63
32
1
3
61
1.25
16955395--16955432
20
1.9
20
88
0
58
31
0
5
63
1.17
16955582--16955674
20
4.7
20
78
4
89
33
1
10
54
1.42
16955643--16955718
28
2.7
28
79
6
73
50
0
2
47
1.15
16955653--16955721
28
2.4
28
80
7
77
49
0
2
47
1.16
16955696--16955736
19
2.2
18
86
4
55
48
0
2
48
1.14
16955696--16955730
17
2.0
18
94
5
63
45
0
0
54
0.99
16955725--16955765
21
2.0
21
95
0
73
21
0
4
73
1.02
16962721--16962751
2
15.5
2
100
0
62
51
0
0
48
1.00
16964432--16964466
17
2.1
17
88
0
52
60
5
5
28
1.43
16965701--16966071
173
2.1
174
82
5
448
37
18
17
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16968797--16968867
20
3.6
20
70
16
67
49
4
2
43
1.36
16968829--16968867
21
1.9
20
89
5
60
53
5
2
38
1.37
16969901--16969957
24
2.7
21
78
19
64
78
3
12
5
1.03
16974095--16974134
20
2.0
20
85
0
53
45
7
5
42
1.54
16974178--16974234
20
2.8
20
79
12
71
52
12
1
33
1.49
16974197--16974300
54
1.9
54
82
7
131
53
7
1
36
1.41
16974859--16974910
24
2.1
26
82
7
63
32
1
3
61
1.25
16974883--16974920
20
1.9
20
88
0
58
31
0
5
63
1.17
16975100--16975144
22
2.1
22
91
4
74
24
0
6
68
1.13
16975140--16975206
29
2.4
28
82
7
73
50
0
2
46
1.16
16975185--16975225
17
2.4
16
88
8
55
48
0
2
48
1.14
16975185--16975217
16
2.0
17
94
5
59
48
0
0
51
1.00
16976908--16976982
37
2.0
37
92
0
123
25
5
22
46
1.73
16977373--16977436
30
2.2
29
83
13
78
42
0
7
50
1.31
16978148--16978205
19
3.0
20
76
5
73
53
5
0
41
1.23
16978258--16978305
3
15.3
3
91
8
78
33
2
0
64
1.05
16979064--16979226
80
2.0
81
96
1
301
12
12
19
55
1.67
16979357--16979398
22
1.9
22
85
0
57
7
9
45
38
1.64
16979583--16979614
16
2.0
16
100
0
64
50
0
0
50
1.00
16979577--16979619
22
2.0
22
85
0
59
48
2
0
48
1.14
16980080--16980271
86
2.2
87
91
3
305
38
17
16
28
1.91
16983364--16983403
19
2.1
19
90
0
62
35
5
5
55
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16988389--16988423
12
2.8
12
86
4
52
0
42
2
54
1.15
16999704--16999732
2
14.5
2
100
0
58
51
0
0
48
1.00
17001414--17001448
17
2.1
17
88
0
52
60
5
5
28
1.43
17004720--17004785
2
33.0
2
78
6
71
42
0
6
51
1.26
17004741--17004792
16
3.1
16
76
10
50
36
0
5
57
1.23
17005109--17005152
20
2.1
21
87
4
63
47
0
2
50
1.13
17005140--17005186
21
2.3
21
74
3
51
63
2
2
31
1.18
17006947--17006989
7
5.9
7
81
5
50
81
4
9
4
0.97
17006948--17006990
15
2.9
14
80
10
50
81
4
9
4
0.97
17010458--17010489
14
2.3
14
94
0
55
84
0
3
12
0.74
17010521--17010707
59
3.2
57
88
7
268
39
9
6
44
1.63
17010634--17010780
73
2.0
72
85
6
199
40
9
9
40
1.70
17010706--17011050
120
2.9
118
82
8
403
36
10
7
45
1.67
17010706--17011050
60
5.8
58
81
8
365
36
10
7
45
1.67
17011068--17011143
5
14.6
5
71
19
50
76
2
6
14
1.10
17011080--17011122
15
2.7
15
82
10
59
76
4
6
11
1.13
17011067--17011137
32
2.3
32
85
9
94
76
2
7
14
1.11
17011166--17011207
4
10.0
4
89
5
57
76
2
0
21
0.90
17011166--17011213
12
4.2
11
79
12
53
77
2
0
20
0.88
17012027--17012123
21
4.8
21
74
12
78
64
3
7
24
1.33
17012116--17012152
20
1.9
18
89
10
56
59
5
8
27
1.48
17012165--17012209
20
2.3
18
82
14
54
80
0
6
13
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17012190--17012310
7
16.3
7
72
19
59
71
1
1
24
1.04
17012191--17012291
27
3.5
29
72
20
77
71
1
1
24
1.07
17012239--17012307
35
1.9
35
82
8
86
72
2
1
23
1.06
17013415--17013699
10
29.4
10
66
17
77
57
8
2
31
1.42
17013415--17013456
18
2.3
18
87
4
66
59
9
2
28
1.41
17013561--17013699
30
4.7
30
78
12
128
57
6
2
33
1.39
17013921--17013972
22
2.4
21
81
9
59
25
5
0
69
1.10
17014356--17014398
10
4.3
10
77
11
52
32
0
2
65
1.06
17014430--17014519
42
2.1
43
81
6
103
35
3
4
56
1.36
17014474--17014568
9
10.0
9
67
10
55
36
2
7
53
1.41
17014515--17014568
19
2.9
19
81
13
67
33
0
7
59
1.25
17014576--17014639
20
3.4
19
81
10
69
35
0
4
59
1.18
17014575--17014639
19
3.4
19
77
12
62
36
0
4
58
1.19
17014604--17014643
12
3.7
12
75
25
52
25
0
5
70
1.08
17014603--17014643
20
2.0
20
100
0
82
24
0
4
70
1.06
17016282--17016356
37
2.0
37
87
10
109
25
4
22
48
1.68
17016573--17016664
27
3.6
27
69
18
70
46
3
0
50
1.17
17016589--17016664
27
3.0
25
75
19
86
48
2
0
48
1.15
17017933--17017988
29
1.9
29
85
7
78
35
3
0
60
1.14
17017941--17018000
29
2.0
29
84
12
77
33
5
0
61
1.17
17024041--17024127
42
2.0
44
91
8
142
51
9
13
25
1.70
17029275--17029352
5
15.8
5
79
11
58
76
1
1
20
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17029294--17029352
21
2.9
20
79
16
59
71
1
1
25
1.05
17038001--17038067
27
2.4
28
85
7
91
82
11
5
0
0.84
17038004--17038071
22
2.9
22
84
8
73
79
14
5
0
0.91
17038012--17038072
22
2.8
21
81
16
79
77
16
6
0
0.98
17044893--17044938
1
46.0
1
91
0
65
93
0
6
0
0.35
17045477--17045502
11
2.4
11
100
0
52
92
7
0
0
0.39
17047302--17047746
121
3.7
120
89
6
699
33
15
16
35
1.90
17047373--17047720
112
3.0
112
86
7
516
33
16
16
34
1.91
17047723--17047768
22
2.1
22
95
0
83
23
21
23
30
1.99
17047832--17047891
22
2.8
21
78
14
77
26
26
20
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126