genome.fa.s667.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  103  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20207843--20207877	6	5.7	6	86	6	52	20	0	34	45	1.51
20207834--20207877	12	3.6	12	82	11	54	18	0	38	43	1.50
20207910--20208059	20	7.2	20	71	20	85	22	2	28	46	1.65
20207980--20208058	41	1.9	41	82	14	101	16	2	34	46	1.60
20208060--20208098	20	2.0	20	90	10	62	23	5	25	46	1.73
20211429--20211504	30	2.5	31	81	8	86	43	3	14	38	1.64
20214815--20214850	8	4.5	8	89	0	54	16	0	27	55	1.42
20215181--20215331	62	2.4	62	87	0	203	39	10	7	43	1.67
20219428--20219479	21	2.5	21	93	0	95	7	7	11	73	1.26
20224120--20224154	13	2.5	14	90	9	54	5	2	8	82	0.91
20228222--20228264	5	9.0	5	90	10	56	20	0	0	79	0.74
20230741--20230795	28	2.0	28	82	7	67	41	0	1	56	1.10
20231328--20231366	19	2.0	20	85	14	55	66	2	0	30	1.05
20231829--20231868	5	7.8	5	91	2	62	15	2	2	80	0.93
20233832--20233891	29	2.0	30	80	3	68	28	5	13	53	1.60
20234539--20234576	19	2.0	19	100	0	76	31	5	5	57	1.43
20234645--20234681	19	1.9	19	100	0	74	64	0	16	18	1.29
20237836--20237878	8	5.0	8	81	13	50	18	0	0	81	0.69
20237836--20237878	18	2.4	17	88	7	59	18	0	0	81	0.69
20239467--20239499	16	2.0	17	88	5	50	18	48	9	24	1.76
20240747--20240785	19	2.0	20	85	14	55	66	0	0	33	0.92
20242887--20242932	24	1.9	23	82	8	56	58	4	0	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20245061--20245085	2	12.5	2	100	0	50	48	0	0	52	1.00
20248309--20248342	17	2.0	17	100	0	68	41	17	17	23	1.90
20249817--20249865	20	2.5	20	83	3	55	77	4	10	8	1.10
20250300--20250363	24	2.6	24	90	2	83	28	6	10	54	1.59
20250310--20250367	24	2.4	24	97	0	107	25	8	6	58	1.53
20253569--20253635	34	2.0	34	84	0	89	22	11	14	50	1.76
20254107--20254151	21	2.1	21	95	0	81	33	28	11	26	1.91
20253593--20254503	453	2.0	453	94	0	1599	30	11	12	45	1.77
20255331--20255418	34	2.6	34	83	0	104	35	6	14	43	1.73
20258507--20258582	36	2.1	36	100	0	152	50	10	25	14	1.75
20264376--20264414	2	19.5	2	83	0	51	53	0	0	46	1.00
20267315--20267350	2	18.0	2	94	0	63	47	0	2	50	1.15
20267427--20267486	8	7.8	8	85	7	79	51	11	0	36	1.38
20267436--20267486	4	12.8	4	87	0	57	50	9	0	39	1.35
20270010--20270089	42	1.9	42	100	0	160	40	10	6	43	1.63
20270538--20270570	2	16.5	2	100	0	66	51	0	0	48	1.00
20271263--20271307	22	2.2	20	88	8	63	33	0	2	64	1.06
20271315--20271363	21	2.4	20	83	12	64	44	2	2	51	1.24
20271326--20271366	21	1.9	22	95	5	75	46	2	0	51	1.14
20271404--20271436	5	6.4	5	96	3	57	18	3	36	42	1.66
20272619--20272654	19	1.9	19	88	5	56	27	0	0	72	0.85
20279781--20279809	14	2.0	15	93	6	51	31	0	6	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20280015--20280044	8	3.8	8	100	0	60	23	0	0	76	0.78
20285759--20285783	9	2.8	9	100	0	50	56	0	0	44	0.99
20316447--20316493	20	2.3	20	85	0	58	34	4	0	61	1.15
20316578--20316621	20	2.2	20	91	0	70	63	9	0	27	1.24
20316649--20316693	19	2.3	20	88	3	65	55	2	4	37	1.32
20316663--20316709	21	2.3	21	85	3	60	42	2	4	51	1.33
20316721--20316783	26	2.4	25	82	10	65	30	0	3	66	1.07
20317959--20318024	24	2.8	23	81	6	69	43	0	1	54	1.09
20318062--20318101	20	2.0	21	85	5	55	37	2	0	60	1.11
20323954--20323994	20	2.0	20	100	0	82	46	4	24	24	1.72
20329656--20329904	124	2.0	125	91	3	405	32	8	23	35	1.85
20330208--20330237	8	3.8	8	100	0	60	0	10	0	90	0.47
20341287--20341327	12	3.2	13	86	10	57	53	0	0	46	1.00
20343038--20343148	30	3.7	30	79	7	125	53	1	4	40	1.32
20358968--20359108	70	2.0	70	97	0	264	31	18	19	30	1.95
20359074--20359161	29	3.1	29	63	21	78	36	13	18	31	1.90
20359074--20359177	55	1.9	55	91	0	172	37	14	19	28	1.91
20360978--20361239	142	1.8	142	90	0	425	42	13	3	40	1.61
20363465--20363509	23	2.0	23	87	12	67	33	8	13	44	1.75
20363655--20363700	24	2.0	24	86	4	67	19	13	6	60	1.54
20363768--20363830	25	2.5	25	84	0	81	19	25	17	38	1.93
20373985--20374019	13	2.8	12	83	8	52	28	2	8	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20374192--20374267	33	2.4	32	82	10	95	53	0	1	44	1.08
20375985--20376042	23	2.6	23	86	2	82	50	12	12	25	1.74
20381070--20381122	23	2.3	23	83	0	61	45	5	9	39	1.60
20382919--20382957	16	2.3	17	82	13	53	43	0	0	56	0.99
20382925--20382957	16	2.1	16	94	0	57	42	0	0	57	0.98
20384328--20384427	50	2.0	50	100	0	200	30	14	18	38	1.89
20388510--20388577	34	2.0	34	94	2	120	55	4	25	14	1.57
20393999--20394107	45	2.5	44	83	5	139	22	5	11	59	1.53
20394767--20395291	138	3.8	138	83	5	623	26	9	12	52	1.68
20396925--20396955	16	1.9	16	93	0	53	35	0	0	64	0.94
20398655--20398696	18	2.2	20	87	8	61	73	2	4	19	1.12
20400688--20400740	18	2.9	18	75	10	54	35	0	5	58	1.22
20401411--20401449	18	2.2	18	85	0	51	84	2	12	0	0.72
20413496--20413547	14	3.5	15	79	12	54	46	1	0	51	1.12
20417100--20417163	33	1.9	33	87	0	92	26	12	17	43	1.84
20418289--20418629	179	1.9	178	91	0	556	39	12	13	35	1.82
20421238--20421309	7	10.4	7	77	8	58	16	0	33	50	1.46
20421254--20421326	21	3.3	22	79	12	78	19	1	31	47	1.58
20421297--20421345	17	2.9	17	84	3	73	18	4	32	44	1.68
20421826--20421885	24	2.8	20	75	18	66	58	16	6	18	1.59
20421838--20421886	24	2.0	24	92	0	80	59	16	6	18	1.57
20421943--20421986	22	2.1	20	87	8	61	59	13	2	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20428938--20428983	21	2.2	21	88	7	67	21	0	19	58	1.39
20429296--20429339	13	3.4	13	80	0	52	36	13	13	36	1.85
20431244--20431270	13	2.1	13	100	0	54	55	0	0	44	0.99
20444326--20444385	26	2.2	28	82	5	70	68	3	1	26	1.15
20451043--20451067	10	2.5	10	100	0	50	76	0	0	24	0.80
20451567--20451617	21	2.4	21	100	0	102	31	0	11	56	1.35
20456769--20456815	3	15.7	3	100	0	94	68	0	0	31	0.90
20463733--20463787	19	3.1	18	77	20	53	32	5	0	61	1.19
20463880--20463919	21	2.0	20	85	5	53	45	10	0	45	1.37
20468746--20469139	216	1.8	215	89	1	610	36	14	16	32	1.90
20471884--20471916	2	16.5	2	100	0	66	48	0	0	51	1.00
20481936--20482000	32	2.0	32	88	5	96	32	23	12	32	1.91
20483690--20483719	2	15.0	2	100	0	60	50	0	0	50	1.00
20484508--20484540	2	16.5	2	93	0	57	48	0	3	48	1.17
20485514--20485542	2	14.5	2	100	0	58	51	48	0	0	1.00
20486309--20486464	39	4.0	39	92	0	267	23	37	5	33	1.77
20487080--20487455	192	2.0	192	86	2	531	17	32	13	37	1.88
20491038--20491148	40	2.8	41	83	5	131	53	8	7	31	1.58
20491041--20491148	38	2.7	39	80	5	112	53	7	7	31	1.56
20491040--20491185	40	3.8	38	78	6	118	50	7	8	32	1.62
20492927--20493206	149	1.9	145	81	8	338	41	15	8	34	1.78
20493468--20493733	62	4.3	61	68	17	154	37	12	10	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20496785--20496833	13	3.8	13	83	2	55	57	0	0	42	0.99
20500534--20500558	13	1.9	13	100	0	50	36	8	8	48	1.62
20513235--20513284	22	2.3	21	80	10	57	62	0	0	38	0.96
20517518--20517542	7	3.6	7	100	0	50	36	0	0	64	0.94
20517540--20517592	21	2.4	23	81	15	67	37	0	5	56	1.23
20521491--20521517	2	13.5	2	100	0	54	48	0	0	51	1.00
20521718--20522022	152	2.0	152	99	0	601	29	11	19	39	1.87
20526648--20526690	22	2.0	22	85	0	59	34	13	9	41	1.77
20530587--20530632	22	2.1	22	95	0	83	32	10	13	43	1.78
20545289--20545373	34	2.5	34	86	0	107	41	8	4	45	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126