genome.fa.s667.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  46  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9053173--9053234	26	2.4	26	80	0	70	43	38	0	17	1.49
9053217--9053468	7	39.6	7	63	20	63	45	32	1	19	1.62
9053222--9053435	12	17.1	12	65	18	64	44	32	2	20	1.64
9053217--9053468	19	12.6	19	69	17	79	45	32	1	19	1.62
9053198--9053284	38	2.3	38	80	4	95	43	36	1	18	1.58
9053260--9053336	30	2.5	32	83	6	97	41	32	5	20	1.75
9053302--9053351	18	2.7	18	84	9	66	44	34	4	18	1.68
9053358--9053468	26	4.2	26	73	17	86	47	31	0	20	1.50
9057076--9057129	23	2.3	23	96	0	99	33	18	35	12	1.89
9061668--9062054	58	6.6	58	80	10	392	37	10	6	44	1.67
9061668--9062047	118	3.2	116	83	9	466	37	10	7	45	1.66
9062986--9063018	17	2.0	16	94	5	57	84	0	0	15	0.61
9063081--9063130	14	3.7	14	72	20	52	66	2	4	28	1.21
9063081--9063138	26	2.3	25	88	5	82	63	1	3	31	1.21
9063150--9063179	14	2.1	15	93	6	53	80	0	20	0	0.72
9063179--9063323	4	36.8	4	65	20	56	68	1	3	26	1.14
9063209--9063251	7	6.0	7	81	13	52	67	2	2	27	1.15
9063269--9063303	18	1.9	18	94	0	61	68	0	0	31	0.90
9063501--9063757	42	5.9	43	82	8	272	40	20	15	24	1.91
9063500--9063758	41	6.0	41	79	11	259	39	20	15	24	1.91
9063549--9063758	84	2.4	86	89	3	316	40	19	15	25	1.90
9075259--9075331	6	12.2	6	74	18	55	79	0	1	19	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9075255--9075336	42	2.0	42	85	9	114	78	0	1	20	0.83
9075255--9075327	27	2.8	26	82	16	80	79	0	1	19	0.81
9075259--9075326	36	2.0	36	88	8	106	79	0	1	19	0.81
9075259--9075331	33	2.2	33	85	9	96	79	0	1	19	0.81
9075265--9075332	13	4.9	14	72	24	56	77	0	1	20	0.84
9076258--9076307	14	3.7	14	72	20	52	66	2	4	28	1.21
9076258--9076312	26	2.2	25	87	6	76	63	1	3	30	1.22
9076325--9076353	12	2.3	13	94	5	51	86	0	13	0	0.58
9076352--9076457	7	14.9	7	71	19	60	65	0	3	30	1.17
9076350--9076467	18	6.3	19	67	23	65	66	0	3	29	1.14
9076392--9076483	25	3.8	24	73	9	64	69	2	3	25	1.15
9087194--9087228	16	2.2	16	94	0	61	31	14	11	42	1.81
9089987--9090027	12	3.4	12	93	0	73	41	14	12	31	1.83
9093399--9093446	18	2.6	19	74	9	55	45	12	4	37	1.61
9093554--9093618	29	2.3	29	82	12	89	55	13	7	23	1.64
9100788--9100821	13	2.6	13	86	13	52	47	0	0	52	1.00
9101110--9101135	1	26.0	1	100	0	52	0	0	0	100	0.00
9103195--9103246	3	17.3	3	100	0	104	67	0	0	32	0.91
9104387--9104508	40	3.0	40	94	4	219	35	18	5	40	1.74
9106985--9107016	3	10.7	3	100	0	64	31	0	0	68	0.90
9107052--9107106	7	8.0	7	77	22	55	76	1	0	21	0.88
9107037--9107113	19	3.4	23	76	20	74	74	5	2	18	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9107073--9107113	19	2.2	19	100	0	82	80	4	0	14	0.87
9107532--9107573	21	2.0	21	82	13	52	45	28	9	16	1.79
9107922--9108028	3	36.0	3	75	15	98	58	2	2	35	1.27
9107923--9108030	23	5.0	21	74	18	73	58	2	2	36	1.27
9108334--9108487	54	2.8	54	79	1	164	45	12	18	23	1.83
9108334--9108503	55	3.1	55	76	3	164	45	11	18	24	1.83
9108718--9108947	120	1.9	119	81	3	273	42	10	24	23	1.85
9114516--9114546	11	2.8	11	95	0	53	67	12	0	19	1.22
9114943--9115002	20	3.0	19	82	7	57	50	36	1	11	1.49
9114943--9115001	21	2.9	20	80	10	57	49	37	1	11	1.50
9114960--9115002	20	2.2	20	87	4	61	48	37	2	11	1.52
9115399--9115511	3	38.3	3	70	16	76	57	3	4	34	1.36
9115439--9115511	11	6.3	11	77	16	76	61	2	1	34	1.19
9115439--9115510	14	5.6	13	77	19	64	61	2	1	34	1.19
9116374--9116419	20	2.2	20	88	3	65	36	0	0	63	0.95
9116408--9116451	17	2.6	17	85	3	63	38	0	0	61	0.96
9116398--9116451	21	2.4	23	78	12	58	38	0	0	61	0.96
9116409--9116459	17	3.1	17	75	13	52	43	0	0	56	0.99
9119998--9120052	3	18.3	3	96	0	101	0	1	32	65	1.03
9123606--9123673	29	2.3	29	84	5	82	51	1	2	44	1.25
9129912--9129959	18	2.4	20	76	20	55	45	0	14	39	1.45
9141270--9141299	10	3.0	10	95	0	51	30	20	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9148054--9148317	131	2.1	125	89	4	402	51	10	8	29	1.66
9148919--9148966	25	2.0	24	84	12	62	58	8	8	25	1.55
9151565--9151623	25	2.4	24	82	2	73	55	16	5	22	1.60
9151668--9151731	19	3.4	19	78	4	67	45	28	7	18	1.77
9152774--9152839	21	3.0	22	71	6	62	39	10	9	40	1.71
9153956--9153991	10	3.7	10	88	3	56	0	11	0	88	0.50
9155227--9155280	25	2.2	25	87	6	76	57	11	5	25	1.55
9155197--9155259	31	2.0	31	85	11	85	50	17	6	25	1.69
9155415--9155479	25	2.6	25	79	13	80	52	10	4	32	1.57
9155575--9155640	29	2.4	28	80	9	73	81	6	4	7	0.97
9155588--9155634	15	3.4	14	82	5	51	80	8	6	4	1.00
9155588--9155639	23	2.2	23	80	10	61	82	7	5	3	0.93
9156028--9156060	17	1.9	17	88	11	50	60	12	0	27	1.32
9156586--9156617	16	2.0	16	93	0	55	53	18	0	28	1.45
9157074--9158120	202	5.2	202	75	5	455	26	16	14	42	1.86
9157671--9158189	201	2.6	200	80	3	540	26	17	15	41	1.88
9158745--9158774	3	10.0	3	100	0	60	33	0	0	66	0.92
9162662--9162713	12	4.1	12	76	11	50	48	3	0	48	1.20
9162666--9162713	19	2.5	19	89	3	69	47	4	0	47	1.21
9162698--9162737	20	2.0	20	85	9	55	62	0	0	37	0.95
9172963--9173019	26	2.1	26	84	12	71	45	12	1	40	1.52
9178632--9178685	23	2.4	23	90	9	85	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9181845--9181886	21	2.0	21	86	9	59	23	19	7	50	1.72
9193751--9193831	33	2.5	33	90	4	130	28	12	18	40	1.87
9193789--9194003	97	2.2	97	87	0	304	30	14	17	37	1.90
9193757--9194003	32	7.6	32	75	2	152	29	14	17	38	1.90
9194088--9194453	33	11.1	32	73	10	131	29	17	17	35	1.93
9194092--9194361	33	8.2	33	77	8	176	29	17	16	37	1.91
9194209--9194361	65	2.3	66	80	6	177	29	16	16	37	1.90
9195404--9195456	22	2.3	23	80	9	63	7	28	0	64	1.21
9195964--9196021	8	7.2	8	76	20	59	0	15	0	84	0.62
9195964--9196021	24	2.4	23	86	13	82	0	15	0	84	0.62
9196282--9196457	72	2.4	71	76	5	165	33	11	23	31	1.90
9202036--9202092	19	3.0	19	69	5	53	22	10	22	43	1.84
9202127--9202264	13	10.6	12	77	15	107	18	2	23	56	1.52
9202127--9202271	26	5.5	26	80	7	143	19	2	22	56	1.52
9202114--9202264	39	3.8	38	78	6	149	17	1	23	56	1.51
9202392--9202427	16	2.2	16	90	0	54	36	0	0	63	0.94
9203811--9203851	13	2.8	15	78	14	50	9	14	2	73	1.19
9203970--9204013	10	4.1	10	81	16	52	2	11	2	84	0.81
9206156--9206198	6	7.0	6	80	15	52	0	16	4	79	0.90
9206163--9206205	18	2.5	17	81	7	50	0	13	6	79	0.93
9206635--9206686	15	3.4	15	76	12	52	28	0	3	67	1.08
9206638--9206697	15	3.8	15	75	18	50	30	0	3	66	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9210697--9210745	25	2.0	25	91	0	80	44	12	20	22	1.84
9219063--9219094	16	2.0	16	100	0	64	31	12	25	31	1.92
9221318--9221371	27	2.0	27	92	0	90	33	12	16	37	1.87
9226342--9226708	195	1.9	194	83	0	482	43	17	5	33	1.73
9227762--9227852	39	2.3	39	82	0	101	23	13	24	39	1.90
9230705--9230742	19	2.1	19	95	5	69	42	5	7	44	1.56
9243466--9243539	30	2.5	29	78	10	78	56	8	0	35	1.29
9243474--9243528	20	2.7	20	88	2	74	50	10	0	38	1.37
9243746--9243788	20	2.2	20	80	16	54	30	0	4	65	1.13
9243881--9243947	26	2.6	25	79	11	64	35	1	5	56	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126