genome.fa.s667.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  104  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20547924--20548023	43	2.3	43	84	6	123	37	10	10	43	1.72
20547924--20548108	44	4.3	43	74	8	119	37	12	10	39	1.78
20549355--20549400	23	1.9	23	82	8	56	21	2	4	71	1.14
20549621--20549654	16	2.1	17	88	5	52	52	2	0	44	1.16
20549664--20549700	19	2.1	19	85	10	51	70	5	5	18	1.27
20551520--20551562	17	2.4	18	88	11	63	62	0	0	37	0.95
20553584--20553615	17	1.9	16	93	6	55	40	3	6	50	1.43
20554374--20554409	15	2.4	16	90	9	58	75	0	8	16	1.04
20554984--20555014	13	2.4	13	94	0	53	61	3	22	12	1.46
20557759--20557789	2	15.5	2	100	0	62	48	0	0	51	1.00
20561483--20561523	20	2.0	20	95	0	73	17	26	4	51	1.65
20562372--20562409	16	2.4	16	86	4	51	50	15	5	28	1.66
20572027--20572070	22	2.0	22	95	0	79	43	13	11	31	1.80
20575926--20575969	22	2.0	22	95	0	79	43	13	11	31	1.80
20581530--20581662	66	2.0	66	92	0	221	41	10	17	30	1.83
20585134--20585187	27	2.0	27	82	13	67	51	0	7	40	1.30
20592599--20592635	17	2.2	17	95	0	65	29	16	0	54	1.43
20594860--20594890	14	2.2	14	94	0	53	29	0	6	64	1.18
20595019--20595060	12	3.5	12	83	9	50	40	0	0	59	0.97
20595019--20595066	24	2.0	24	84	8	62	41	0	0	58	0.98
20610028--20610329	165	1.8	164	80	7	369	45	11	10	33	1.74
20610512--20610563	25	2.1	25	96	0	95	46	3	21	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20610556--20610826	112	2.4	110	81	7	300	35	7	13	43	1.71
20610616--20610889	112	2.4	111	80	5	277	34	7	12	45	1.69
20614196--20614229	15	2.2	15	89	5	50	52	2	0	44	1.16
20614360--20614384	13	1.9	13	100	0	50	72	4	0	24	1.02
20622251--20622291	19	2.1	20	86	13	59	41	0	2	56	1.13
20628148--20628188	18	2.3	18	91	0	64	68	4	9	17	1.35
20630188--20630240	27	2.0	27	100	0	106	30	7	22	39	1.82
20636399--20636429	2	15.5	2	100	0	62	48	0	0	51	1.00
20637203--20637265	26	2.4	27	80	17	71	58	0	7	33	1.27
20637251--20637304	27	2.0	26	89	10	83	50	0	0	50	1.00
20639822--20639869	25	1.9	25	82	0	60	37	2	2	58	1.22
20640401--20640473	17	4.4	16	71	11	58	23	1	28	46	1.60
20640686--20640716	16	1.9	16	93	0	53	45	0	0	54	0.99
20641537--20641578	14	3.0	14	79	10	50	0	9	21	69	1.17
20641862--20641918	1	57.0	1	78	0	60	5	1	3	89	0.64
20641862--20641918	26	2.2	26	90	9	91	5	1	3	89	0.64
20641945--20641988	3	14.7	3	85	0	52	43	0	0	56	0.99
20644425--20644464	20	1.9	22	90	10	66	32	2	5	60	1.32
20646282--20646310	2	14.5	2	100	0	58	48	0	0	51	1.00
20646323--20646351	15	2.0	15	93	6	51	55	3	0	41	1.17
20651016--20651072	20	2.8	20	81	0	60	47	5	8	38	1.57
20652360--20652398	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20657736--20657804	33	2.1	33	94	0	120	34	13	18	33	1.90
20663105--20663154	13	3.8	13	74	10	57	70	0	2	28	0.99
20665424--20665487	26	2.5	27	82	12	82	42	9	1	46	1.45
20665424--20665488	25	2.6	25	80	11	62	41	9	3	46	1.51
20665166--20665539	195	1.9	194	82	9	467	36	8	6	48	1.60
20666130--20666166	17	2.1	18	90	5	58	16	5	0	78	0.93
20666348--20666726	42	9.0	41	80	10	376	42	15	17	24	1.88
20666603--20666708	53	2.0	53	94	0	185	44	15	16	23	1.86
20674945--20674986	9	4.7	9	93	0	75	33	0	23	42	1.55
20679012--20679050	10	3.7	10	83	12	51	74	0	2	23	0.94
20679464--20679514	9	5.7	9	81	9	59	17	1	0	80	0.81
20679680--20679710	8	3.9	8	100	0	62	12	0	0	87	0.55
20695051--20695091	20	2.0	21	85	4	57	26	19	17	36	1.94
20696170--20696333	22	7.5	22	70	11	95	42	7	9	40	1.66
20696205--20696357	22	7.0	22	71	4	58	41	7	9	40	1.67
20696504--20696528	12	2.1	12	100	0	50	52	0	16	32	1.44
20696790--20696829	21	1.9	21	89	0	62	37	10	20	32	1.85
20700153--20700191	20	2.0	20	94	0	69	33	0	0	66	0.92
20700161--20700200	20	2.0	20	90	0	62	40	0	0	60	0.97
20700184--20700233	23	2.2	22	80	13	57	42	0	0	58	0.98
20709367--20709623	133	1.9	134	84	5	342	30	11	17	40	1.84
20712985--20713036	27	1.9	27	92	0	86	25	13	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20717846--20717976	62	2.1	62	91	0	208	41	10	10	37	1.75
20719393--20719423	15	2.1	15	100	0	62	38	32	0	29	1.57
20724724--20724767	23	1.9	23	86	9	63	52	0	2	45	1.13
20724729--20724779	20	2.5	20	78	12	59	52	0	5	41	1.25
20730107--20730144	13	3.0	13	80	3	51	42	0	2	55	1.14
20730813--20730843	2	15.5	2	100	0	62	0	51	0	48	1.00
20732202--20733689	742	2.0	735	84	2	1960	20	31	22	26	1.98
20732239--20733689	371	3.9	370	84	3	1762	20	31	22	26	1.98
20734404--20734444	15	2.7	15	80	0	55	17	7	0	75	1.02
20739151--20739197	22	2.1	22	84	0	58	21	2	23	53	1.57
20739214--20739370	52	3.0	52	87	1	217	39	8	26	25	1.84
20757893--20757997	28	3.8	28	89	3	133	49	11	9	29	1.70
20766795--20767341	291	1.9	288	86	4	778	47	16	7	28	1.73
20769424--20769648	5	43.2	5	78	10	148	36	2	7	53	1.42
20770407--20770492	30	3.1	27	73	16	77	27	0	1	70	0.94
20770465--20770497	17	1.9	17	93	0	57	21	0	3	75	0.93
20785144--20785193	20	2.5	19	73	20	57	80	12	6	2	0.98
20786002--20786070	27	2.6	27	100	0	138	33	21	18	26	1.97
20786212--20786264	27	2.0	25	85	7	70	32	43	20	3	1.70
20786758--20786803	16	2.7	18	83	12	62	50	30	2	17	1.58
20788466--20788548	42	2.0	42	90	4	132	33	16	15	33	1.91
20788472--20788548	21	3.7	21	75	3	84	31	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20792201--20792286	31	2.8	31	79	11	97	55	13	2	27	1.51
20793865--20793906	22	1.9	22	90	0	66	33	11	9	45	1.73
20797778--20797819	22	1.9	22	85	0	57	33	9	9	47	1.68
20803900--20803963	33	2.0	31	85	11	85	53	1	0	45	1.10
20803910--20803955	14	3.6	13	77	11	51	58	0	0	41	0.98
20804290--20804333	22	2.0	23	86	13	65	70	0	2	27	0.99
20804887--20804912	7	3.7	7	100	0	52	73	0	0	26	0.84
20814143--20814193	26	2.0	26	84	0	66	37	25	3	33	1.74
20819083--20819112	14	2.1	15	93	6	53	0	13	3	83	0.77
20819092--20819154	25	2.5	25	73	2	63	9	15	3	71	1.25
20827841--20827870	6	5.0	6	100	0	60	33	33	0	33	1.58
20829023--20829069	21	2.1	23	84	7	62	46	2	4	46	1.34
20829440--20829487	11	4.5	10	82	12	51	85	0	8	6	0.74
20829434--20829486	26	2.0	26	82	17	65	83	0	7	9	0.83
20830937--20831019	5	17.0	5	73	20	61	78	1	2	18	0.93
20830935--20831019	10	8.8	9	74	18	73	78	1	2	17	0.91
20831756--20831800	21	2.2	21	92	7	76	48	0	0	51	1.00
20836070--20836110	15	2.6	16	80	3	57	21	0	14	63	1.30
20839498--20839533	14	2.6	14	91	4	56	52	0	2	44	1.15
20842165--20842202	3	12.7	3	100	0	76	68	0	0	31	0.90
20847214--20847257	18	2.3	19	84	7	54	72	9	4	13	1.24
20848248--20848314	27	2.4	27	87	2	89	77	2	5	13	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20851073--20851120	18	2.7	18	84	15	64	31	2	0	66	1.03
20854623--20854674	23	2.3	23	96	3	97	51	7	7	32	1.59
20855748--20855832	30	2.7	33	78	10	90	52	1	0	45	1.08
20855765--20855832	34	2.1	32	83	5	82	54	1	0	44	1.09
20866176--20866214	11	3.8	10	87	12	53	87	0	12	0	0.55
20866179--20866213	13	2.6	13	90	4	52	88	0	11	0	0.51
20866176--20866200	9	2.8	9	100	0	50	92	0	8	0	0.40
20867465--20867766	47	6.5	47	72	6	209	31	11	12	44	1.78
20867462--20867797	47	7.1	46	69	15	129	30	11	12	45	1.77
20867860--20867963	40	2.6	39	82	8	120	41	10	10	37	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126