genome.fa.s667.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  8  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907217--1907258	10	4.0	10	87	9	57	47	0	0	52	1.00
1907820--1907876	23	2.4	23	76	2	60	59	1	5	33	1.30
1907959--1908006	20	2.5	19	76	6	53	43	0	0	56	0.99
1907970--1908033	33	1.9	33	84	6	85	45	3	0	51	1.17
1914726--1914785	28	2.1	29	81	9	70	51	0	10	38	1.35
1915096--1915121	12	2.2	12	100	0	52	76	0	0	23	0.78
1916342--1916384	22	2.0	22	81	9	52	67	0	2	30	1.03
1916339--1916394	13	4.1	14	77	11	53	67	0	1	30	1.01
1917359--1917396	15	2.4	17	86	8	53	28	0	13	57	1.36
1919236--1919266	16	1.9	16	93	0	53	3	19	3	74	1.10
1919237--1919286	22	2.2	23	89	3	75	4	22	2	72	1.12
1919709--1919762	21	2.5	21	84	3	63	44	0	0	55	0.99
1919718--1919762	22	2.1	21	87	4	63	48	0	0	51	1.00
1925166--1925207	10	4.0	10	87	9	57	47	0	0	52	1.00
1926434--1926487	24	2.4	22	82	17	67	48	0	0	51	1.00
1927304--1927345	10	4.0	10	90	9	66	50	0	0	50	1.00
1928053--1928100	20	2.5	19	76	6	53	43	0	0	56	0.99
1928064--1928127	33	1.9	33	84	6	85	45	3	0	51	1.17
1929779--1929810	8	4.2	8	84	15	50	46	0	0	53	1.00
1934827--1934886	28	2.1	29	81	9	70	51	0	11	36	1.38
1936446--1936488	22	2.0	22	81	9	52	67	0	2	30	1.03
1936443--1936498	13	4.1	14	77	11	53	67	0	1	30	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938554--1938588	18	2.0	18	88	5	54	37	8	0	54	1.31
1939349--1939400	22	2.3	23	86	3	79	3	23	1	71	1.13
1945774--1945820	22	2.2	22	88	3	69	4	21	2	72	1.12
1946246--1946299	21	2.5	21	84	3	63	44	1	0	53	1.11
1953565--1953630	33	2.0	34	85	14	93	42	0	1	56	1.08
1958028--1958065	16	2.3	17	90	4	60	26	0	2	71	1.00
1958430--1958465	18	2.1	18	89	5	56	44	0	0	55	0.99
1958923--1958994	38	2.0	38	84	13	98	41	1	2	54	1.23
1960042--1960087	20	2.3	20	85	3	58	47	6	2	43	1.41
1963229--1963279	15	3.2	16	89	10	86	35	11	11	41	1.78
1963229--1963277	17	3.0	17	91	8	84	34	12	12	40	1.80
1971859--1971924	28	2.4	27	80	14	82	39	3	0	57	1.14
1971945--1971990	22	2.1	22	84	8	58	45	13	4	36	1.63
1973260--1973285	12	2.2	12	100	0	52	50	0	0	50	1.00
1973280--1973309	16	1.9	15	93	6	51	36	0	0	63	0.95
1975207--1975247	10	4.1	10	96	0	73	51	2	0	46	1.14
1976632--1976744	51	2.2	53	91	6	203	46	9	5	38	1.60
1977622--1977659	2	19.0	2	88	0	58	50	5	0	44	1.24
1978882--1978913	16	1.9	17	93	6	57	65	0	3	31	1.08
1979388--1979430	21	2.0	21	95	0	77	53	0	0	46	1.00
1979375--1979444	24	2.9	22	76	19	61	58	0	4	37	1.18
1979594--1979696	50	2.1	50	83	3	127	48	4	1	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1980685--1980757	33	2.2	33	92	4	121	41	2	2	53	1.29
1980696--1980791	45	2.1	45	74	18	76	40	5	2	52	1.36
1980700--1980776	12	6.7	12	76	16	74	41	3	1	53	1.27
1980704--1980757	5	10.4	5	78	21	58	40	1	1	55	1.21
1980701--1980776	33	2.3	33	88	4	109	40	3	1	53	1.27
1980713--1980787	24	3.2	24	75	17	77	38	6	2	52	1.42
1981156--1981197	22	2.0	21	85	4	57	45	11	2	40	1.54
1984450--1984529	40	2.0	40	97	0	151	26	16	12	45	1.83
1984732--1984806	39	1.9	39	97	0	141	36	22	9	32	1.86
1991029--1991060	2	16.0	2	100	0	64	50	0	0	50	1.00
1996271--1996306	2	18.0	2	94	0	63	50	2	0	47	1.15
2000119--2000160	22	2.0	21	85	4	57	45	11	2	40	1.54
2002171--2002303	65	2.0	65	97	0	248	28	17	24	29	1.97
2003459--2003578	40	3.0	40	96	0	222	25	15	12	46	1.81
2028198--2028239	10	3.9	10	87	12	57	54	2	40	2	1.26
2028641--2028716	27	2.8	27	75	15	75	48	2	0	48	1.15
2028707--2028736	7	4.1	7	95	4	51	53	3	0	43	1.17
2030218--2030281	29	2.4	26	76	18	69	60	3	1	34	1.22
2030222--2030278	29	2.0	29	92	0	96	59	3	1	35	1.25
2031062--2031101	19	2.1	19	95	0	71	42	12	12	32	1.80
2034016--2034057	18	2.1	21	87	12	63	33	0	4	61	1.17
2034328--2034376	24	2.0	24	84	0	62	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2033870--2034450	307	1.9	300	83	7	738	40	6	13	39	1.71
2034569--2034593	2	12.5	2	100	0	50	48	0	0	52	1.00
2044687--2044721	2	17.5	2	100	0	70	51	0	0	48	1.00
2046419--2046512	40	2.3	41	91	7	149	18	23	20	38	1.93
2051392--2051472	40	2.0	40	92	0	135	28	11	29	30	1.91
2054161--2054188	13	2.2	13	100	0	56	21	17	14	46	1.84
2056583--2056630	2	24.0	2	100	0	96	50	0	0	50	1.00
2065292--2065318	2	13.5	2	100	0	54	48	0	0	51	1.00
2065864--2066461	243	2.5	237	82	6	634	37	8	9	44	1.68
2066540--2066591	21	2.3	22	80	9	61	25	1	17	55	1.52
2067193--2067231	3	13.0	3	86	0	51	25	2	2	69	1.14
2070574--2070636	31	2.1	30	82	8	74	41	6	3	49	1.44
2071681--2071988	154	2.0	154	98	0	589	38	6	12	42	1.69
2073818--2073850	2	16.5	2	93	0	57	45	0	0	54	0.99
2075405--2075440	2	18.5	2	94	5	65	47	0	0	52	1.00
2075407--2075441	17	2.1	17	100	0	70	45	0	0	54	0.99
2078326--2078390	34	1.9	34	87	0	94	33	18	21	26	1.96
2090164--2090215	11	4.5	11	81	9	50	63	1	1	32	1.16
2090184--2090223	6	6.7	6	83	11	55	70	0	0	30	0.88
2090184--2090216	16	2.0	17	94	5	59	69	0	0	30	0.88
2090768--2090801	16	2.1	17	88	5	52	58	2	2	35	1.28
2100131--2100161	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2126618--2126652	13	2.6	13	86	4	52	51	0	0	48	1.00
2126618--2126676	21	3.0	20	74	13	52	54	0	1	44	1.10
2126630--2126681	18	2.9	18	81	13	54	53	0	1	44	1.11
2126711--2126768	22	2.7	22	86	7	75	48	0	0	51	1.00
2126762--2126859	23	4.5	23	76	8	89	41	1	3	54	1.23
2126807--2126873	23	3.1	20	77	14	55	43	0	2	53	1.16
2126724--2126900	82	2.2	80	78	13	175	45	1	3	50	1.26
2127047--2127078	14	2.3	14	94	0	55	46	0	0	53	1.00
2127407--2127448	22	1.9	22	90	0	66	42	2	0	54	1.13
2128917--2128946	1	30.0	1	100	0	60	0	0	100	0	0.00
2129476--2129535	25	2.4	25	81	10	70	28	25	8	38	1.84
2141326--2141352	8	3.4	8	100	0	54	11	0	0	88	0.50
2142440--2142500	27	2.2	27	91	2	104	31	14	3	50	1.59
2148799--2148824	2	13.0	2	100	0	52	50	0	0	50	1.00
2148824--2148852	2	14.5	2	100	0	58	0	0	48	51	1.00
2152485--2152509	2	12.5	2	100	0	50	0	52	0	48	1.00
2152509--2152544	2	18.0	2	100	0	72	50	50	0	0	1.00
2154993--2155020	2	14.0	2	100	0	56	50	0	0	50	1.00
2156059--2156084	2	13.0	2	100	0	52	50	0	0	50	1.00
2163044--2163090	24	1.9	25	87	12	71	63	0	0	36	0.94
2173752--2173838	14	5.8	16	71	26	66	36	1	1	60	1.11
2173755--2173844	31	2.9	31	79	12	87	36	1	2	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2173752--2173944	15	13.0	15	69	19	95	42	1	1	54	1.19
2173766--2173874	54	1.9	57	81	9	134	41	1	1	55	1.21
2173823--2173926	45	2.4	43	85	3	136	46	1	1	50	1.23
2173818--2173924	23	4.8	23	72	9	78	46	1	1	49	1.23
2173828--2173924	43	2.2	45	87	3	135	48	2	2	47	1.25
2173791--2173961	45	3.8	45	73	18	126	45	1	2	50	1.21
2173859--2173961	43	2.3	43	83	8	118	49	0	1	47	1.19
2173784--2173947	18	8.7	18	68	16	73	44	1	1	52	1.19
2174063--2174130	22	3.1	22	86	0	91	38	2	1	57	1.23
2174979--2175021	17	2.6	17	92	3	70	44	0	2	53	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126