genome.fa.s667.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  24  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5262662--5262699	19	2.0	19	85	10	51	71	2	0	26	1.00
5265852--5265878	4	6.8	4	100	0	54	25	25	0	48	1.52
5266684--5266709	8	3.2	8	100	0	52	73	0	0	26	0.84
5268294--5268353	30	2.0	29	87	3	84	78	5	11	5	1.07
5268294--5268351	29	2.0	29	83	6	73	79	5	12	3	1.02
5268994--5269150	66	2.4	66	79	3	174	34	19	17	28	1.95
5268944--5269180	33	7.2	32	71	11	106	35	18	15	30	1.93
5269170--5269319	33	4.6	32	74	10	108	40	13	14	32	1.84
5269492--5269586	29	3.6	26	74	13	77	81	5	7	6	1.00
5269531--5269571	1	41.0	1	85	0	55	92	4	0	2	0.44
5269932--5269964	13	2.8	12	90	9	50	72	0	3	24	0.98
5287205--5287336	69	1.9	70	81	7	162	24	9	9	56	1.60
5295870--5295900	12	2.6	12	94	0	53	64	0	19	16	1.29
5302027--5302057	12	2.6	12	94	0	53	61	9	9	19	1.54
5305978--5306028	20	2.5	22	75	15	54	45	19	5	29	1.74
5310010--5310064	19	3.1	19	84	7	62	52	5	1	40	1.35
5310026--5310064	19	2.1	19	95	0	69	48	7	0	43	1.31
5314696--5314871	37	4.8	36	77	6	156	35	21	7	35	1.82
5314709--5314871	73	2.2	74	81	3	186	36	20	8	34	1.83
5317218--5317242	13	1.9	13	100	0	50	84	16	0	0	0.63
5318417--5318480	28	2.3	28	76	10	69	71	0	20	7	1.10
5318469--5318516	7	6.7	7	83	4	51	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5321943--5322238	140	2.1	140	79	6	314	28	12	15	43	1.83
5321943--5322289	141	2.5	138	78	7	333	29	12	15	42	1.83
5322483--5322521	12	3.2	12	89	10	62	53	0	23	23	1.46
5323042--5323459	49	8.6	49	76	5	301	30	16	12	41	1.84
5323448--5323553	43	2.4	44	87	10	137	34	11	12	41	1.78
5323465--5323553	43	2.0	44	91	6	146	35	10	13	40	1.78
5323483--5323550	18	3.2	21	62	25	52	36	10	13	39	1.78
5323615--5323656	21	1.9	21	90	9	66	85	4	4	4	0.82
5324209--5324406	99	2.0	99	97	0	378	28	10	14	46	1.76
5325084--5325146	23	2.7	23	76	14	67	20	17	9	52	1.72
5326278--5326325	17	2.8	17	100	0	96	52	35	0	12	1.40
5326317--5326360	20	2.2	20	100	0	88	43	34	4	18	1.70
5327966--5328039	37	2.0	37	89	5	114	25	21	13	39	1.90
5327974--5328052	37	2.2	35	79	16	90	30	20	12	36	1.90
5328621--5328675	17	3.3	16	82	12	58	83	9	1	5	0.86
5331007--5331047	21	2.0	21	85	0	55	46	31	0	21	1.52
5337202--5337268	34	2.0	33	91	5	109	34	10	11	43	1.76
5338131--5338190	29	2.0	30	81	15	72	41	3	1	53	1.27
5338247--5338386	71	1.9	72	91	2	228	48	5	7	38	1.54
5340665--5340698	9	3.7	9	88	7	50	85	0	5	8	0.75
5341982--5342055	36	2.1	35	82	12	89	24	2	1	71	1.07
5342072--5342121	24	2.0	24	84	3	64	36	6	8	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5342150--5342195	19	2.4	19	82	13	58	54	6	0	39	1.26
5342139--5342195	20	2.9	19	80	12	62	59	7	0	33	1.24
5343056--5343163	3	37.7	3	82	9	118	62	0	1	35	1.13
5347107--5347152	21	2.3	21	78	17	53	50	0	0	50	1.00
5347158--5347203	19	2.4	19	82	17	60	28	0	4	67	1.10
5347162--5347200	16	2.4	17	82	8	53	25	0	5	69	1.09
5348219--5348265	20	2.3	20	82	10	60	59	4	6	29	1.41
5348662--5348693	14	2.3	14	94	0	55	25	0	37	37	1.56
5351275--5351382	20	5.4	20	80	8	103	50	10	7	32	1.64
5351260--5351382	40	3.1	40	77	6	124	50	10	7	31	1.64
5351572--5351601	10	3.0	10	90	0	51	60	13	0	26	1.34
5360804--5360978	90	1.9	90	90	2	280	36	12	14	37	1.84
5361726--5361789	32	2.0	32	87	0	92	37	15	17	29	1.91
5367910--5367950	21	1.9	22	90	5	66	24	14	9	51	1.72
5375977--5376020	19	2.3	19	100	0	88	43	0	31	25	1.55
5377088--5377126	16	2.4	16	100	0	78	38	17	12	30	1.88
5377088--5377129	8	5.2	8	91	0	66	40	16	11	30	1.85
5377236--5377346	20	5.5	20	75	14	95	54	9	6	28	1.57
5377273--5377346	20	3.7	20	80	10	96	54	10	6	28	1.61
5378540--5378573	6	5.7	6	85	0	50	50	11	2	35	1.54
5378541--5378609	12	5.8	12	79	3	59	53	11	4	30	1.56
5378541--5378609	24	2.9	23	82	8	75	53	11	4	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5387294--5387335	15	2.9	15	85	3	50	52	4	4	38	1.44
5387311--5387337	14	1.9	14	100	0	54	51	7	7	33	1.58
5399514--5399572	30	2.0	30	89	0	91	32	10	15	42	1.80
5411369--5411442	12	6.4	11	79	14	78	83	4	9	2	0.86
5411367--5411434	31	2.2	30	84	7	84	83	5	7	2	0.88
5411375--5411434	9	6.6	9	78	16	52	85	5	8	1	0.81
5412711--5412909	47	4.3	45	82	5	191	34	8	15	42	1.76
5412717--5412895	94	1.9	93	86	1	250	32	7	14	44	1.74
5416218--5416270	23	2.3	23	100	0	106	69	3	7	18	1.28
5418812--5419393	201	2.9	202	81	4	658	41	12	12	33	1.80
5420364--5420530	61	2.6	65	85	7	252	44	24	12	17	1.84
5425475--5425515	16	2.5	17	88	4	57	65	7	14	12	1.45
5425942--5426233	18	17.1	17	68	22	111	56	1	0	41	1.13
5425980--5426230	104	2.4	108	79	13	281	56	1	0	41	1.10
5425948--5426230	41	6.7	41	74	15	195	57	1	0	40	1.13
5426006--5426230	81	2.7	80	81	11	217	56	1	0	41	1.11
5426329--5426368	12	3.5	12	75	25	50	47	2	0	50	1.14
5426338--5426388	25	2.0	25	88	7	77	45	1	0	52	1.12
5426328--5426388	26	2.6	21	72	22	59	44	1	0	54	1.10
5428027--5428894	235	3.7	230	80	7	907	46	10	10	33	1.72
5431084--5431129	22	2.1	22	100	0	92	36	13	17	32	1.88
5434588--5434615	1	28.0	1	100	0	56	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5434765--5434805	19	2.1	20	86	4	57	31	24	9	34	1.88
5435003--5435039	3	12.3	3	100	0	74	67	0	0	32	0.91
5435085--5435119	3	11.7	3	100	0	70	65	0	0	34	0.93
5436161--5436207	3	15.7	3	100	0	94	31	0	0	68	0.90
5436444--5436469	8	3.2	8	100	0	52	26	0	0	73	0.84
5436496--5436544	22	2.2	22	85	7	64	63	2	2	32	1.17
5437057--5437091	18	2.0	17	88	5	52	11	5	0	82	0.82
5445710--5445761	26	2.0	26	85	7	70	28	1	9	59	1.40
5446246--5446278	2	17.0	2	93	6	59	48	0	0	51	1.00
5445974--5447115	593	1.9	596	91	5	1859	34	14	11	40	1.81
5447896--5447935	19	2.1	19	86	9	55	62	7	2	27	1.35
5456140--5456180	18	2.3	18	83	8	57	31	19	14	34	1.92
5459516--5459540	2	12.5	2	100	0	50	48	0	0	52	1.00
5463761--5463813	23	2.3	23	84	9	65	15	1	9	73	1.17
5470910--5471013	37	3.2	30	76	18	109	30	0	9	58	1.36
5470938--5471018	37	2.2	37	95	0	144	27	1	9	61	1.35
5470913--5471013	19	5.8	19	70	23	87	31	0	8	58	1.36
5471872--5471970	49	2.0	49	92	0	162	38	6	15	40	1.72
5472852--5472896	22	2.0	23	87	12	67	33	6	4	55	1.46
5474900--5475026	68	1.9	68	88	0	191	35	8	14	40	1.77
5475873--5476041	55	3.1	54	80	5	178	47	11	12	28	1.76
5476078--5476204	55	2.3	54	81	9	141	46	10	16	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5477235--5477470	51	4.5	54	78	10	226	45	4	11	38	1.60
5477975--5478020	19	2.3	20	85	10	60	63	8	15	13	1.52
5479989--5480031	17	2.5	17	85	7	61	44	18	4	32	1.71
5480221--5480319	32	3.2	31	80	13	98	39	32	5	23	1.76
5480236--5480321	25	3.4	24	76	12	84	39	32	4	23	1.75
5480265--5480319	18	2.9	19	78	8	58	41	32	3	21	1.71
5487545--5487604	28	2.2	27	85	8	77	73	5	5	16	1.19
5488103--5488149	17	2.7	18	74	9	53	23	4	23	48	1.68
5490655--5491443	160	4.9	161	78	6	726	41	15	10	32	1.81
5497175--5497275	49	2.1	49	98	0	193	42	15	10	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126