genome.fa.s667.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  76  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15351770--15351831	23	2.9	21	75	17	72	56	1	0	41	1.09
15352051--15352106	22	2.8	20	73	21	53	41	1	0	57	1.09
15353092--15353142	21	2.5	21	96	3	95	52	0	0	47	1.00
15353864--15353899	18	2.1	17	89	5	54	38	5	2	52	1.39
15354682--15354718	10	3.5	11	82	10	51	40	0	2	56	1.13
15354677--15354719	21	2.1	20	86	4	59	44	0	2	53	1.13
15354828--15354890	21	2.7	23	83	16	76	58	0	1	39	1.07
15357187--15357228	20	2.2	20	87	8	61	76	2	0	21	0.90
15357473--15357510	19	2.0	19	94	0	67	50	0	7	42	1.31
15357566--15357605	13	2.9	13	85	7	53	72	2	0	25	0.97
15359042--15359114	32	2.3	32	82	0	83	46	2	0	50	1.15
15358975--15359446	252	1.9	251	84	4	637	45	5	5	44	1.48
15361343--15361378	17	2.1	17	100	0	72	38	11	16	33	1.84
15363665--15363697	16	2.1	16	88	5	50	54	3	3	39	1.31
15366540--15366575	15	2.4	15	85	0	54	58	0	2	38	1.13
15377514--15377557	21	2.2	20	87	4	61	61	4	0	34	1.16
15377753--15377781	3	9.7	3	100	0	58	31	0	0	68	0.89
15379059--15379097	16	2.6	14	77	14	51	46	0	0	53	1.00
15379910--15379937	12	2.3	12	100	0	56	0	0	7	92	0.37
15380265--15380366	3	35.3	3	75	18	83	35	2	3	57	1.32
15380265--15380365	38	2.7	38	73	19	104	35	2	3	57	1.33
15380362--15380387	8	3.2	8	100	0	52	11	11	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15380817--15380864	23	2.1	23	88	0	69	31	4	8	56	1.48
15381161--15381216	6	9.3	6	78	18	55	17	0	5	76	0.96
15381161--15381216	13	4.6	13	77	16	50	17	0	5	76	0.96
15381301--15381343	18	2.4	18	81	11	52	62	9	2	25	1.37
15381308--15381343	19	1.9	18	88	5	54	61	11	0	27	1.30
15384914--15385607	120	5.8	120	72	7	325	20	20	12	45	1.84
15385288--15385609	119	2.7	119	74	9	296	20	19	12	47	1.81
15386293--15386390	5	18.8	5	75	12	56	33	3	5	58	1.36
15386306--15386379	33	2.2	32	86	9	96	36	4	5	54	1.43
15387184--15387244	30	2.0	29	81	12	70	21	1	6	70	1.19
15387275--15387313	17	2.5	15	84	15	60	56	15	0	28	1.40
15387279--15387313	17	2.1	17	100	0	70	54	17	0	28	1.43
15388519--15388549	16	2.0	16	93	6	55	64	0	0	35	0.94
15388517--15388552	15	2.4	14	86	13	54	61	0	0	38	0.96
15389021--15389073	21	2.5	22	75	12	56	39	3	1	54	1.29
15389172--15389329	29	5.3	30	69	13	103	42	1	3	53	1.25
15395133--15395173	21	1.9	22	85	5	57	43	4	2	48	1.37
15397605--15397675	25	2.7	26	84	8	81	52	12	2	32	1.54
15397656--15397700	17	2.6	17	89	0	72	55	6	0	37	1.26
15398489--15398553	6	10.8	6	89	0	103	63	1	1	33	1.13
15406970--15407019	24	2.1	23	88	7	73	56	4	16	24	1.57
15406967--15407025	25	2.3	26	82	14	77	54	3	16	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407166--15407208	22	2.0	22	90	0	68	48	9	6	34	1.62
15416306--15416383	13	6.0	13	69	21	56	30	23	14	32	1.94
15416315--15416391	26	3.0	26	94	0	136	31	23	15	29	1.95
15417141--15417184	21	2.1	21	87	4	63	56	4	2	36	1.32
15417947--15417977	16	2.0	16	93	6	55	64	0	0	35	0.94
15418987--15419055	20	3.5	20	76	4	59	44	1	1	52	1.19
15424223--15424268	22	2.1	22	84	8	58	34	6	0	58	1.24
15425850--15425914	30	2.2	30	88	0	103	36	13	1	47	1.53
15425853--15425921	30	2.3	30	87	2	95	34	15	2	46	1.61
15427350--15427429	30	2.6	32	73	15	78	50	5	1	43	1.32
15427485--15427514	11	2.7	11	94	0	51	33	0	0	66	0.92
15428426--15428493	24	2.7	25	82	13	86	66	1	1	30	1.10
15428553--15428581	14	2.0	15	93	6	51	82	0	0	17	0.66
15431747--15431779	2	16.5	2	100	0	66	48	0	0	51	1.00
15431917--15431956	10	4.0	10	86	0	53	47	12	0	40	1.41
15435465--15435521	28	2.0	28	100	0	114	47	17	7	28	1.73
15447616--15447659	23	1.9	23	85	0	61	40	2	2	54	1.25
15448158--15448220	26	2.4	25	74	7	63	55	3	3	38	1.32
15453818--15453861	22	2.0	22	90	0	70	40	4	6	47	1.50
15454920--15455001	39	2.1	39	95	0	146	32	18	9	39	1.83
15464061--15464096	17	2.1	18	89	5	56	69	0	2	27	1.02
15465201--15465245	21	2.1	21	91	0	72	51	11	0	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467332--15467402	35	2.0	35	94	0	124	23	18	22	35	1.96
15468288--15468330	21	2.1	21	83	12	54	48	0	13	37	1.43
15468619--15468650	16	2.0	16	100	0	64	62	0	0	37	0.95
15469429--15469469	21	1.9	22	85	5	57	43	4	2	48	1.37
15477109--15477140	10	3.2	10	100	0	64	81	9	9	0	0.88
15477520--15477561	13	3.2	13	80	10	50	76	0	16	7	1.00
15477512--15477576	26	2.8	21	73	22	58	78	1	13	6	1.01
15477507--15477576	35	2.0	35	83	8	88	78	1	12	7	1.01
15477503--15477551	19	2.7	18	82	14	57	81	0	10	8	0.87
15478728--15478808	21	3.7	21	76	12	90	38	9	17	34	1.83
15478810--15479082	25	11.5	25	72	15	181	37	9	13	38	1.78
15478825--15479150	46	7.0	45	78	11	286	37	9	14	38	1.80
15478826--15479099	92	2.9	95	83	10	323	38	10	13	37	1.79
15479007--15479078	21	3.4	21	96	1	126	33	9	16	40	1.81
15478865--15479152	143	2.0	143	82	9	345	36	9	15	38	1.80
15479546--15479825	41	6.6	41	80	7	267	24	13	16	46	1.83
15479546--15479825	82	3.3	83	79	9	307	24	13	16	46	1.83
15480346--15480387	12	3.4	12	86	3	57	71	23	2	2	1.10
15480673--15480705	12	2.5	13	85	14	50	69	0	30	0	0.88
15480669--15480719	21	2.4	22	86	3	68	66	0	31	1	1.03
15486418--15486447	15	2.0	15	93	0	51	43	3	0	53	1.17
15486867--15487041	15	11.6	15	74	9	151	19	1	31	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15486867--15487041	31	5.8	29	74	9	145	19	1	31	47	1.60
15486864--15487006	59	2.4	60	80	5	166	18	2	31	48	1.60
15486882--15487041	44	3.5	44	83	5	169	20	1	31	46	1.61
15487281--15487312	3	10.7	3	93	0	55	28	0	3	68	1.04
15488554--15488587	13	2.6	13	95	0	59	29	0	2	67	1.05
15491178--15491514	167	2.0	167	98	0	656	37	16	14	31	1.89
15505119--15505151	14	2.4	14	89	0	57	57	0	3	39	1.14
15505255--15505293	20	2.0	20	89	0	60	58	0	0	41	0.98
15505275--15505315	15	2.7	15	80	0	55	60	0	0	39	0.96
15505257--15505351	32	2.9	30	81	13	82	54	1	0	44	1.07
15505254--15505374	19	6.8	18	72	15	67	53	0	0	44	1.12
15505400--15505626	15	14.3	15	67	22	117	41	1	2	54	1.22
15505408--15505608	13	16.9	12	68	19	72	40	0	2	55	1.22
15505418--15505626	28	7.9	27	66	23	97	41	0	2	54	1.21
15505424--15505637	18	13.6	17	69	20	114	41	1	2	54	1.23
15505441--15505637	31	6.2	31	74	15	138	41	1	2	54	1.23
15505411--15505623	106	2.0	108	83	12	271	41	0	2	54	1.21
15505526--15505637	48	2.3	49	86	7	149	41	1	1	54	1.21
15505572--15505633	30	2.0	30	90	3	97	48	1	0	50	1.10
15505824--15505850	14	1.9	14	100	0	54	37	0	0	62	0.95
15507092--15507149	22	2.6	22	71	10	55	44	0	1	53	1.10
15516337--15516432	41	2.3	42	76	13	101	47	0	1	51	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15517173--15517221	21	2.2	22	80	16	57	28	2	2	67	1.13
15517198--15517264	25	2.6	26	79	9	66	37	2	0	59	1.13
15517927--15517970	21	2.1	21	87	8	63	61	0	0	38	0.96
15518449--15518495	19	2.5	19	85	0	67	38	2	0	59	1.09
15521198--15521257	23	2.7	22	87	7	95	68	0	1	30	0.99
15521235--15521275	14	3.0	14	82	10	50	63	0	2	34	1.08
15523329--15523359	2	15.5	2	100	0	62	51	0	0	48	1.00
15523446--15523556	51	2.2	52	90	4	181	35	9	18	37	1.82
15534754--15534804	18	2.8	18	83	13	61	76	1	19	1	0.98
15536303--15536340	19	2.0	20	94	5	69	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126