genome.fa.s667.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  33  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6948114--6948290	72	2.5	71	75	3	174	53	16	14	15	1.74
6948167--6948427	144	1.8	144	82	3	337	49	14	17	18	1.79
6948378--6948468	36	2.5	36	77	8	87	57	14	10	17	1.65
6948457--6948499	22	2.0	22	90	0	68	53	11	16	18	1.72
6948483--6948607	36	3.5	36	71	4	117	48	16	18	16	1.81
6948349--6948609	130	2.0	130	82	1	317	51	15	15	17	1.77
6948487--6948633	72	2.1	71	81	3	170	48	16	18	16	1.81
6948682--6948950	36	7.6	35	70	10	136	51	13	19	15	1.76
6948686--6948944	72	3.6	72	79	7	258	50	13	19	16	1.77
6948697--6949061	36	10.2	36	65	13	90	48	15	20	16	1.81
6949081--6949173	36	2.6	35	81	3	114	49	10	19	20	1.77
6949676--6949851	80	2.2	81	83	3	219	34	11	13	40	1.81
6959980--6960037	24	2.5	23	81	13	66	39	5	3	51	1.41
6960290--6960351	30	2.1	30	87	0	88	48	6	3	41	1.45
6962047--6962077	13	2.4	13	94	0	53	87	0	9	3	0.66
6962764--6962802	20	2.1	18	86	13	53	64	5	5	25	1.35
6964030--6964094	3	21.7	3	93	0	58	66	10	1	21	1.31
6969422--6969641	59	3.7	59	88	5	327	34	13	6	45	1.70
6969422--6969645	119	1.9	118	90	4	362	34	13	6	45	1.70
6972228--6972290	28	2.2	28	85	0	90	19	17	46	17	1.85
6972754--6973107	108	3.4	104	87	8	465	31	16	13	38	1.88
6973074--6973533	42	11.1	42	90	1	655	36	24	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6973074--6973515	124	3.6	125	90	2	676	35	24	16	23	1.95
6973074--6973533	166	2.8	166	89	3	687	36	24	16	23	1.95
6973074--6973533	82	5.6	81	87	3	607	36	24	16	23	1.95
6974757--6974825	9	8.2	9	72	18	51	7	20	0	72	1.08
6978723--6978893	60	2.9	60	89	6	258	33	12	7	46	1.69
6981563--6981587	9	2.8	9	100	0	50	0	12	0	88	0.53
6981753--6981807	23	2.4	22	82	8	65	76	0	5	18	0.97
6982955--6982992	19	2.2	17	86	13	51	65	7	10	15	1.45
6996787--6996829	10	4.4	10	80	14	54	86	0	13	0	0.58
6996787--6996827	8	4.9	8	93	6	64	85	0	14	0	0.60
6996766--6996829	28	2.2	28	81	10	76	82	1	12	3	0.85
6996766--6996831	27	2.4	27	82	9	80	81	1	13	3	0.87
6997716--6997897	49	3.7	50	83	2	217	35	14	15	34	1.88
6997719--6997899	98	1.8	98	86	2	265	34	13	16	35	1.88
6997716--6997950	49	4.7	49	76	12	169	33	14	16	35	1.89
7005478--7005527	18	2.7	19	75	6	57	16	2	34	48	1.57
7005516--7005572	20	2.8	20	89	0	87	24	1	28	45	1.63
7005566--7005601	18	1.9	19	94	5	65	22	0	27	50	1.50
7005534--7005601	31	2.2	33	84	7	97	23	0	27	48	1.51
7005665--7005718	19	2.9	20	81	13	62	14	0	35	50	1.44
7005655--7005764	31	3.5	32	79	13	88	15	0	33	50	1.44
7005665--7005877	20	11.4	19	71	16	83	15	0	35	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005735--7005881	20	7.5	20	76	8	124	13	0	35	50	1.47
7005715--7006015	20	14.9	20	68	16	106	15	0	33	50	1.50
7005870--7006017	39	3.7	38	70	13	102	16	0	33	49	1.51
7016554--7016599	21	2.2	21	92	3	76	50	2	0	47	1.13
7019491--7019534	18	2.4	18	84	0	61	6	9	0	84	0.79
7019512--7019548	16	2.3	16	90	0	56	10	5	2	81	0.96
7019591--7019849	46	5.7	46	84	1	297	45	15	7	31	1.74
7019724--7019795	23	3.1	23	67	21	60	44	11	11	33	1.75
7019629--7019863	46	5.1	46	85	1	310	45	14	8	31	1.75
7022715--7022756	21	2.0	22	85	4	59	19	4	11	64	1.44
7030610--7030659	24	2.2	22	82	10	57	56	6	6	32	1.48
7034871--7034922	23	2.2	25	86	6	72	59	13	3	23	1.50
7036977--7037019	3	14.3	3	100	0	86	67	0	0	32	0.91
7039139--7039180	19	2.2	20	79	12	52	64	0	4	30	1.14
7039308--7039443	14	10.1	13	72	10	69	52	20	4	22	1.64
7039339--7039443	14	7.6	14	79	2	97	51	20	4	23	1.66
7052923--7052976	24	2.2	24	75	15	58	42	1	5	50	1.36
7054828--7054865	18	2.1	18	90	0	58	15	0	7	76	1.01
7054805--7054865	27	2.2	28	82	8	72	14	1	13	70	1.24
7054844--7054906	14	4.4	14	78	8	65	20	3	6	69	1.24
7054988--7055108	45	2.7	46	76	12	133	38	18	12	31	1.88
7056002--7056197	23	9.0	23	68	14	101	31	17	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7056166--7056218	22	2.4	22	83	3	61	41	18	13	26	1.87
7056203--7056287	31	2.7	31	80	3	91	32	24	11	30	1.91
7056015--7056249	129	1.8	129	80	5	287	32	18	18	30	1.95
7058545--7058592	13	3.6	13	77	5	51	4	14	2	79	0.98
7058556--7058595	13	2.9	14	85	7	64	5	22	0	72	1.04
7058545--7058606	12	4.8	13	84	7	74	4	16	1	77	1.02
7061230--7061272	19	2.3	19	84	8	52	20	0	2	76	0.89
7061917--7061951	3	11.7	3	93	0	52	28	0	5	65	1.15
7065220--7065258	20	2.0	20	89	0	60	56	12	7	23	1.62
7065439--7065782	144	2.4	144	83	3	433	31	13	12	42	1.82
7074705--7074735	3	10.3	3	92	0	53	29	0	0	70	0.87
7077606--7077638	15	2.1	16	88	5	50	3	15	0	81	0.80
7078031--7078098	34	2.0	34	94	0	118	32	20	14	32	1.93
7080406--7080440	17	2.1	16	89	5	52	62	11	2	22	1.41
7085374--7085415	21	2.0	21	85	4	57	73	2	4	19	1.12
7090880--7090957	32	2.4	32	73	12	79	33	10	5	51	1.58
7091379--7091481	7	15.6	7	64	22	53	17	1	34	45	1.60
7091333--7091521	13	14.5	13	69	16	63	19	2	33	44	1.63
7091432--7091528	40	2.5	40	85	10	128	19	2	30	47	1.61
7091359--7091590	7	34.6	7	67	20	50	20	1	31	46	1.61
7091496--7091620	27	4.7	26	67	23	64	20	0	30	48	1.55
7091556--7091637	13	6.2	12	73	14	56	18	1	34	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7091586--7091623	19	2.0	20	84	5	51	10	0	36	52	1.36
7091556--7091663	26	4.1	25	73	12	74	18	0	33	47	1.55
7091552--7091673	14	9.1	14	70	13	62	18	0	32	47	1.55
7091431--7091644	54	4.0	53	77	10	195	18	1	32	47	1.58
7096813--7096868	13	3.9	14	78	17	53	80	1	14	3	0.93
7097315--7097360	23	1.9	25	86	8	69	65	0	23	10	1.24
7097338--7097378	21	2.1	19	86	9	55	65	0	24	9	1.22
7097388--7097429	22	1.9	21	85	9	57	73	0	19	7	1.05
7099352--7099402	26	2.0	26	96	0	93	41	15	13	29	1.86
7099357--7099420	26	2.5	26	86	0	83	43	14	17	25	1.86
7099752--7099886	40	3.4	40	80	4	130	37	12	11	38	1.79
7100115--7100500	40	9.8	39	69	13	141	36	14	11	37	1.83
7099524--7100242	360	2.0	361	89	1	1111	41	10	15	32	1.82
7100115--7100265	80	1.9	79	85	6	207	37	13	9	39	1.77
7100358--7100536	80	2.2	79	79	7	193	37	12	11	38	1.79
7100384--7100617	80	2.9	79	74	9	186	40	11	11	37	1.77
7100336--7100662	40	8.2	40	72	10	150	36	13	13	37	1.83
7100904--7101037	40	3.4	38	81	8	153	38	12	12	36	1.82
7100850--7101039	79	2.4	79	75	10	188	38	11	13	36	1.81
7101009--7101068	30	2.0	30	86	0	84	40	15	10	35	1.80
7101055--7101132	40	1.9	41	92	7	133	37	23	11	28	1.89
7101308--7101344	17	2.2	16	90	4	56	81	13	2	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7101308--7101356	16	3.0	16	84	3	53	77	16	4	2	1.01
7101614--7101652	10	3.9	10	86	0	51	41	17	15	25	1.89
7103494--7103629	7	20.0	7	75	10	95	44	33	2	19	1.63
7103495--7103744	27	9.3	27	67	13	106	45	31	2	20	1.65
7103589--7103657	28	2.4	28	83	11	79	44	30	1	23	1.62
7103590--7103657	14	4.9	14	74	13	68	45	29	1	23	1.62
7104695--7104751	26	2.1	27	84	9	73	47	3	19	29	1.66
7104726--7104786	18	3.4	18	68	18	56	49	4	16	29	1.66
7104874--7104999	6	18.7	7	73	12	61	20	0	35	42	1.58
7104922--7105027	12	8.8	12	71	13	83	24	0	36	38	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126