genome.fa.s667.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  68  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13932169--13932193	13	1.9	13	100	0	50	24	28	8	40	1.83
13935268--13935315	21	2.3	20	82	3	51	29	20	6	43	1.76
13934549--13935635	544	2.0	542	83	4	1370	33	16	9	39	1.82
13939949--13939981	15	2.3	14	94	5	57	0	15	0	84	0.61
13939943--13939981	20	1.9	20	85	15	53	5	12	0	82	0.83
13940079--13940133	20	2.5	20	80	19	58	21	0	3	74	0.97
13940520--13940586	31	2.2	31	81	5	73	25	25	22	26	2.00
13940653--13940704	20	2.6	20	82	11	70	30	25	19	25	1.98
13941030--13941073	1	44.0	1	81	0	52	4	4	0	90	0.53
13941103--13941140	10	3.9	10	83	16	53	18	0	0	81	0.69
13941104--13941141	14	2.6	15	84	16	53	18	0	0	81	0.69
13941158--13941341	60	3.1	58	81	11	237	46	9	12	32	1.73
13941371--13941826	160	2.9	160	94	2	796	27	14	18	39	1.89
13945094--13945129	1	36.0	1	88	0	54	94	0	5	0	0.31
13945494--13945537	13	3.3	13	90	3	70	84	0	15	0	0.63
13945484--13945556	30	2.4	30	77	13	78	76	0	17	5	0.97
13946740--13947178	42	10.6	41	90	4	636	23	16	23	36	1.94
13946740--13947195	83	5.5	83	92	2	688	23	16	24	36	1.94
13946740--13947178	125	3.5	122	90	4	648	23	16	23	36	1.94
13947205--13947310	11	9.5	11	83	11	119	87	12	0	0	0.54
13947205--13947310	27	3.9	27	86	10	153	87	12	0	0	0.54
13947206--13947310	37	2.9	36	88	8	151	88	11	0	0	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13947206--13947310	1	105.0	1	76	0	102	88	11	0	0	0.51
13947618--13947672	20	2.5	20	80	19	58	21	0	3	74	0.97
13948059--13948125	31	2.2	31	83	5	82	23	25	23	26	2.00
13948560--13948603	1	44.0	1	81	0	52	4	4	0	90	0.53
13948633--13948670	10	3.9	10	83	16	53	18	0	0	81	0.69
13948634--13948671	14	2.6	15	84	16	53	18	0	0	81	0.69
13948688--13948857	60	2.9	58	85	10	236	44	8	13	33	1.75
13948902--13949357	160	2.9	160	93	2	769	28	13	18	40	1.88
13948913--13949377	156	2.9	157	92	1	761	28	14	18	38	1.89
13951551--13951579	8	3.6	8	100	0	58	0	20	0	79	0.74
13951564--13951603	21	1.9	21	90	10	64	5	20	0	75	0.99
13951544--13951598	29	1.9	28	88	3	83	1	20	0	78	0.85
13951947--13951993	6	7.7	6	78	21	53	36	0	0	63	0.94
13951932--13951991	25	2.3	27	83	11	81	40	0	0	60	0.97
13954220--13954340	9	14.1	8	71	16	57	35	2	5	56	1.37
13954304--13954340	3	12.3	3	100	0	74	32	0	0	67	0.91
13955103--13955192	6	14.7	6	73	21	71	18	1	2	77	0.93
13955110--13955181	25	2.8	25	80	15	76	19	0	2	77	0.88
13955103--13955192	16	5.2	16	89	6	99	18	1	2	77	0.93
13957871--13957993	10	11.2	11	70	21	53	23	2	2	71	1.10
13957876--13957915	19	2.1	19	95	0	71	15	0	7	77	0.98
13957890--13957993	22	4.6	21	73	18	77	25	1	1	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13957922--13957953	15	2.1	15	94	0	55	31	0	0	68	0.90
13962407--13962441	9	3.5	10	88	11	54	80	0	11	8	0.92
13962407--13962443	11	3.5	11	82	14	51	78	0	10	10	0.97
13962731--13962771	16	2.5	16	84	4	55	85	4	4	4	0.83
13963586--13963740	56	2.8	55	76	3	159	19	22	14	43	1.86
13963529--13963842	55	5.7	55	69	8	172	21	21	13	42	1.87
13963528--13963897	111	3.3	110	76	5	293	21	22	13	42	1.87
13964263--13964405	9	16.2	8	72	15	65	34	4	4	56	1.38
13964344--13964401	3	19.7	3	89	3	91	32	3	0	63	1.11
13964752--13964799	21	2.2	22	82	10	55	16	6	37	39	1.74
13965168--13965205	17	2.2	17	86	9	51	18	2	0	78	0.86
13965167--13965221	22	2.6	20	83	11	65	20	1	1	76	0.97
13965175--13965246	17	4.5	16	68	16	51	20	1	4	73	1.07
13967357--13967388	3	10.7	3	100	0	64	68	0	31	0	0.90
13971224--13971296	37	2.0	37	91	0	119	42	13	12	31	1.81
13974062--13974127	35	1.9	34	87	3	96	40	33	4	21	1.73
13974317--13974421	52	2.0	52	92	0	174	25	22	8	42	1.82
13980568--13980670	52	2.0	52	88	0	152	25	20	9	44	1.82
13996397--13996437	18	2.3	18	86	0	55	9	58	2	29	1.43
13998656--13998685	2	15.0	2	100	0	60	50	0	0	50	1.00
14002037--14002095	27	2.1	29	81	12	70	42	6	1	49	1.39
14002287--14002345	25	2.3	25	80	14	66	35	10	0	54	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14004349--14004419	37	1.9	37	88	0	106	26	9	12	50	1.71
14004776--14004817	12	3.7	11	81	12	50	76	0	4	19	0.96
14004782--14004829	15	3.3	14	80	11	53	75	2	2	20	1.02
14005206--14005249	21	2.0	22	91	4	72	38	27	0	34	1.57
14006048--14006262	65	3.3	65	82	1	216	48	12	17	21	1.80
14017833--14017863	15	2.1	15	93	0	53	77	0	0	22	0.77
14018212--14018247	10	3.6	10	88	11	56	41	8	5	44	1.58
14018209--14018257	20	2.5	20	86	3	73	38	16	4	40	1.67
14018664--14018750	30	2.9	30	91	0	147	49	1	19	29	1.56
14018707--14018756	3	16.7	3	83	8	57	42	0	26	32	1.56
14025529--14025576	24	2.0	24	83	0	60	47	12	4	35	1.60
14028855--14028898	2	23.0	2	90	9	74	50	0	0	50	1.00
14028872--14029158	143	2.0	143	97	0	547	32	17	14	35	1.90
14031807--14031855	17	2.7	18	79	20	66	59	0	0	40	0.98
14031802--14031863	24	2.6	24	85	7	74	59	0	0	40	0.97
14032699--14032932	116	2.0	116	90	3	373	44	5	7	41	1.56
14034838--14034983	52	2.8	52	79	8	154	48	6	15	29	1.69
14034855--14034981	52	2.5	52	80	3	159	48	6	15	29	1.70
14038954--14038993	12	3.3	13	80	13	50	42	0	0	57	0.98
14038986--14039023	15	2.5	15	79	12	51	47	10	2	39	1.52
14039037--14039068	2	16.0	2	93	0	55	46	3	0	50	1.17
14042312--14042338	2	13.5	2	100	0	54	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044952--14044980	15	2.0	15	93	6	51	51	0	0	48	1.00
14045166--14045207	15	2.9	14	83	13	50	54	4	2	38	1.34
14046920--14046959	20	2.0	20	100	0	80	20	20	30	30	1.97
14048762--14048851	46	2.0	46	93	0	153	48	5	13	32	1.65
14051325--14051382	20	2.8	20	72	12	55	51	8	0	39	1.33
14051297--14051393	40	2.4	40	75	1	104	48	7	6	38	1.56
14052975--14053038	29	2.3	28	82	15	80	46	1	1	50	1.20
14057531--14057569	19	2.1	19	85	0	51	41	5	2	51	1.38
14061455--14061499	21	2.1	21	95	0	81	37	8	11	42	1.72
14062342--14062394	2	26.5	2	88	0	79	56	0	0	43	0.99
14067472--14067500	13	2.3	13	94	5	51	72	3	0	24	1.00
14068993--14069042	25	2.1	24	85	7	66	48	14	6	32	1.67
14070639--14070842	43	4.7	43	76	6	162	42	16	15	25	1.87
14070639--14070867	86	2.7	85	76	9	223	42	16	15	25	1.87
14070830--14070896	33	2.1	33	86	8	93	44	17	11	25	1.83
14070744--14070981	118	2.0	118	85	1	325	44	15	13	26	1.83
14070862--14071008	42	3.5	42	79	9	165	47	15	12	24	1.80
14070862--14071049	85	2.2	88	78	13	198	48	14	11	25	1.77
14071254--14071425	65	2.6	65	76	0	182	50	12	18	19	1.77
14071714--14071847	47	2.9	46	79	4	153	35	8	19	35	1.83
14071815--14071879	34	1.9	34	87	0	94	33	10	18	36	1.86
14072339--14072491	46	3.4	47	76	9	138	42	18	5	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14074575--14074606	3	10.7	3	100	0	64	34	31	0	34	1.58
14075460--14075522	5	13.0	5	78	9	60	22	1	1	74	0.99
14075454--14075522	16	4.3	16	76	10	70	20	2	1	75	1.01
14075504--14075562	26	2.3	26	82	5	66	27	1	1	69	1.07
14075460--14075585	39	3.5	36	75	20	90	25	1	3	69	1.12
14079448--14079517	18	3.7	18	77	17	79	50	10	5	34	1.60
14079513--14079560	21	2.3	20	82	6	69	50	8	6	35	1.58
14080527--14080586	30	2.0	30	84	12	79	41	15	8	35	1.77
14086580--14086772	106	1.8	106	92	4	327	31	17	11	39	1.85
14086715--14086859	43	3.3	43	86	1	191	40	24	13	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126