Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  89  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17535002--17535050
22
2.2
22
85
0
71
40
22
4
32
1.73
17539809--17539865
2
29.5
2
78
7
64
52
0
1
45
1.11
17540941--17540968
10
2.8
10
100
0
56
50
42
0
7
1.30
17546286--17546320
5
7.2
5
93
6
63
40
0
0
60
0.97
17547961--17548395
239
1.8
238
95
2
786
54
8
7
29
1.58
17548584--17548617
18
1.9
17
88
5
50
64
0
0
35
0.94
17549498--17549563
33
2.0
33
96
0
123
30
22
21
25
1.99
17550039--17550104
33
2.0
33
100
0
132
30
24
21
24
1.99
17552089--17552127
8
4.8
8
84
15
53
58
0
0
41
0.98
17552099--17552125
14
1.9
14
100
0
54
62
0
0
37
0.95
17555015--17555062
12
4.0
12
80
0
60
45
10
2
41
1.50
17556542--17556626
43
2.0
44
97
2
163
42
23
8
25
1.82
17556815--17556872
2
29.5
2
82
3
73
50
1
1
46
1.22
17559867--17559898
2
16.5
2
93
6
57
46
0
0
53
1.00
17561339--17561381
2
21.5
2
90
0
68
46
4
0
48
1.22
17562646--17562687
21
2.0
21
90
0
66
30
14
23
30
1.94
17563120--17563254
57
2.4
57
81
10
154
32
5
8
52
1.57
17563497--17563531
16
2.2
16
89
0
52
11
5
0
82
0.82
17563812--17563856
22
2.0
23
82
4
56
28
22
13
35
1.92
17566015--17566047
12
2.5
14
80
19
52
51
0
6
42
1.26
17566588--17566624
2
18.5
2
100
0
74
51
0
0
48
1.00
17569626--17569685
2
30.5
2
83
3
77
46
1
1
50
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17571234--17571277
12
3.7
12
87
0
61
43
0
9
47
1.35
17571243--17571279
2
18.5
2
88
0
56
43
0
5
51
1.24
17574255--17574292
8
4.9
8
84
15
53
39
0
0
60
0.97
17574257--17574283
14
1.9
14
100
0
54
37
0
0
62
0.95
17577422--17577836
225
1.8
226
96
0
778
29
6
8
54
1.57
17578518--17578690
88
2.0
83
85
7
231
42
11
9
35
1.74
17579461--17579500
2
21.0
2
85
10
57
50
0
2
47
1.14
17581155--17581187
2
16.5
2
100
0
66
48
0
0
51
1.00
17583431--17583488
28
2.1
28
100
0
116
36
36
10
17
1.84
17589666--17589729
16
3.9
16
73
18
53
73
1
4
20
1.09
17591546--17591570
2
12.5
2
100
0
50
52
0
0
48
1.00
17592173--17592218
2
23.0
2
86
0
56
43
0
8
47
1.34
17594272--17594423
79
1.9
81
85
5
211
45
8
5
40
1.59
17594813--17594863
23
2.3
23
83
10
61
41
11
3
43
1.60
17595216--17595269
2
27.5
2
81
3
56
40
1
0
57
1.09
17599511--17599539
2
14.5
2
100
0
58
0
0
48
51
1.00
17599827--17599861
17
2.1
17
100
0
70
60
0
17
22
1.37
17601739--17601796
29
2.0
29
93
0
98
60
12
5
22
1.51
17601969--17602165
67
3.0
65
82
12
217
56
6
10
26
1.56
17602362--17602406
21
2.2
21
84
7
58
42
6
8
42
1.62
17606863--17607346
44
11.0
44
82
1
504
24
13
18
43
1.86
17607531--17607566
5
7.6
5
93
6
58
19
0
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17607810--17607848
21
1.9
21
84
5
53
79
10
10
0
0.94
17607936--17607986
19
2.7
19
84
0
66
17
7
25
49
1.74
17608430--17608469
3
13.0
3
84
5
53
32
2
5
60
1.32
17608425--17608527
21
4.8
21
70
12
68
27
2
5
64
1.31
17608638--17608894
70
3.6
70
83
7
299
48
6
9
35
1.61
17608814--17608847
15
2.3
15
90
5
52
61
2
0
35
1.11
17608844--17609074
60
3.9
58
75
11
198
50
8
10
30
1.67
17608844--17609074
120
1.9
120
87
3
340
50
8
10
30
1.67
17610896--17610934
21
1.9
20
85
15
53
25
12
17
43
1.85
17611177--17611723
44
12.4
44
83
2
564
24
13
18
43
1.86
17611177--17611750
88
6.5
88
84
2
643
24
13
18
42
1.87
17612972--17613110
64
2.2
65
78
8
160
46
5
9
39
1.58
17613150--17613178
14
2.0
15
93
6
51
55
6
0
37
1.27
17613049--17613305
70
3.6
70
92
3
390
48
6
8
36
1.61
17613220--17613248
14
2.0
15
93
6
51
55
6
0
37
1.27
17613255--17613484
119
1.9
121
86
5
333
50
8
10
30
1.67
17616667--17616700
2
17.0
2
93
0
59
52
0
0
47
1.00
17621593--17621625
17
1.9
17
100
0
66
54
0
18
27
1.44
17623523--17623581
30
2.0
30
90
3
93
61
11
5
22
1.50
17623756--17623948
67
2.9
66
80
6
194
59
5
9
25
1.52
17624176--17624217
15
2.9
14
77
16
50
42
4
0
52
1.22
17629402--17629432
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17630272--17630327
28
2.0
28
100
0
112
32
28
10
28
1.90
17633070--17633124
2
28.5
2
81
7
69
47
1
1
49
1.23
17634937--17635084
75
2.0
75
89
2
226
37
14
13
34
1.86
17636508--17636561
3
18.0
3
92
7
92
31
0
1
66
1.02
17636588--17636619
12
2.6
13
90
9
50
12
3
0
84
0.74
17636656--17636844
74
2.7
67
83
6
200
47
4
10
37
1.59
17636755--17636798
16
2.6
17
82
13
56
56
2
0
40
1.11
17636662--17637052
144
2.8
134
76
13
387
46
5
10
37
1.63
17636728--17636989
74
3.6
73
86
6
365
47
5
10
36
1.61
17636939--17637159
60
3.7
59
83
7
284
47
5
12
34
1.65
17636939--17637160
120
1.9
120
93
0
381
46
5
13
34
1.65
17647686--17647743
16
3.6
16
79
4
71
82
1
6
8
0.90
17647684--17647740
25
2.2
25
87
3
71
82
1
8
7
0.91
17647684--17647740
9
6.7
9
78
15
59
82
1
8
7
0.91
17648446--17648477
16
2.0
16
93
0
55
28
18
12
40
1.87
17648747--17649206
44
10.1
44
75
9
336
23
14
18
44
1.86
17649420--17649447
5
5.6
5
100
0
56
39
0
0
60
0.97
17650500--17650537
16
2.4
16
90
0
58
60
2
0
36
1.11
17650569--17650597
14
2.0
15
93
6
51
55
6
0
37
1.27
17650469--17650799
70
4.8
71
80
8
357
48
6
9
35
1.62
17650659--17650903
60
4.2
60
80
5
277
50
8
10
31
1.65
17650674--17650903
119
1.9
121
90
1
365
49
8
10
31
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17651017--17651043
5
5.4
5
100
0
54
18
0
0
81
0.69
17651326--17651371
22
2.0
22
83
4
56
30
21
10
36
1.88
17653420--17653485
33
2.0
33
96
0
123
30
22
21
25
1.99
17653962--17654027
33
2.0
33
100
0
132
30
24
21
24
1.99
17653114--17654199
542
2.0
542
98
0
2104
36
16
18
27
1.93
17660413--17660496
42
2.0
44
95
4
154
42
23
8
25
1.82
17660682--17660734
2
27.5
2
77
7
56
50
1
1
45
1.23
17660682--17660730
14
3.6
14
86
8
66
51
2
2
44
1.24
17663718--17663757
2
20.5
2
94
5
73
47
0
0
52
1.00
17664533--17664686
83
1.8
84
88
5
240
40
8
10
40
1.70
17665201--17665235
2
17.5
2
93
0
61
48
2
0
48
1.16
17666505--17666567
22
2.7
23
78
7
65
34
12
25
26
1.92
17666836--17666862
5
5.4
5
100
0
54
81
0
0
18
0.69
17666978--17667224
58
4.3
58
78
10
220
32
10
8
48
1.67
17666977--17667200
118
1.9
117
86
2
315
32
11
8
48
1.68
17666978--17667197
58
3.8
58
81
8
239
32
11
7
48
1.68
17667152--17667408
138
1.8
143
83
8
348
36
9
7
47
1.63
17667338--17667375
16
2.4
16
90
0
58
36
0
2
60
1.11
17668748--17669250
44
11.4
43
81
4
468
45
17
12
24
1.83
17668741--17669250
132
3.9
132
81
4
553
44
17
13
25
1.84
17669490--17669521
16
2.0
16
93
0
55
40
12
18
28
1.87
17670237--17670281
17
2.5
19
82
13
51
6
11
2
80
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17680786--17681076
60
5.0
59
83
6
344
33
11
6
48
1.66
17680787--17681083
119
2.6
116
86
4
397
34
11
6
48
1.64
17681066--17681101
17
2.1
16
90
10
54
44
0
2
52
1.15
17681059--17681101
18
2.4
19
84
11
63
46
0
4
48
1.22
17681004--17681199
74
2.6
74
91
4
299
37
9
4
47
1.57
17681129--17681167
16
2.4
16
86
0
60
35
0
0
64
0.94
17682787--17682930
75
1.9
75
90
2
227
36
13
13
36
1.84
17684760--17684820
2
31.5
2
83
6
81
49
1
1
47
1.21
17691702--17691744
20
2.2
20
87
4
61
39
4
4
51
1.44
17692781--17692825
15
3.2
15
81
12
60
44
0
0
55
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126