Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  111  of  126  ( 15044 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21985079--21985121
21
2.0
22
82
13
54
62
2
2
32
1.20
21986893--21987024
58
2.3
56
79
10
140
22
0
28
47
1.57
21986887--21987021
30
4.6
29
75
14
109
22
0
27
49
1.55
21986887--21987042
30
5.3
29
74
13
99
22
0
28
48
1.56
21987320--21987362
3
14.3
3
95
0
77
32
0
2
65
1.06
21987314--21987422
12
9.0
12
74
17
52
30
4
2
62
1.29
21989335--21989754
210
2.0
211
92
0
698
32
10
17
39
1.84
21995090--21995192
30
3.4
30
80
5
118
49
0
10
38
1.44
21997523--21997564
21
2.0
21
81
9
50
38
2
0
59
1.10
22004669--22004736
21
3.2
22
75
8
68
4
23
4
67
1.27
22009307--22009406
34
2.9
34
93
0
173
52
14
15
19
1.75
22015331--22015356
1
26.0
1
100
0
52
100
0
0
0
0.00
22015663--22015722
26
2.4
25
81
8
70
48
13
10
28
1.74
22015680--22015733
26
2.0
26
82
3
63
44
16
12
25
1.84
22015791--22015818
12
2.3
12
100
0
56
67
21
0
10
1.20
22019508--22019561
25
2.2
25
93
0
90
35
9
16
38
1.81
22019794--22019831
19
2.0
19
94
0
67
26
18
26
28
1.98
22019827--22020034
57
3.8
55
87
8
309
27
16
25
30
1.97
22020008--22020080
37
2.0
37
88
0
110
31
19
19
30
1.96
22020008--22020067
18
3.3
18
81
4
75
31
18
16
33
1.93
22019952--22020362
94
4.4
94
93
0
687
29
18
22
29
1.97
22020207--22020265
19
3.2
19
75
4
66
30
18
20
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22020305--22020381
19
4.1
19
84
3
111
32
20
20
25
1.97
22020290--22020365
37
2.1
37
94
0
134
30
21
19
28
1.97
22020290--22020365
18
4.1
18
79
5
80
30
21
19
28
1.97
22020392--22020418
14
1.9
14
100
0
54
18
14
29
37
1.91
22020432--22020505
19
4.2
19
68
19
70
27
16
27
29
1.97
22020406--22020543
51
2.7
51
91
2
217
24
16
28
30
1.97
22020486--22020554
32
2.2
32
97
0
129
20
17
30
31
1.95
22026139--22026183
13
3.6
13
82
8
58
2
15
0
82
0.77
22027098--22027129
10
3.0
11
90
9
57
75
0
18
6
1.01
22036598--22036679
42
2.0
39
82
15
96
53
0
1
45
1.08
22036768--22037214
240
1.9
241
87
3
659
46
4
7
41
1.54
22038731--22038771
17
2.4
18
80
12
50
36
7
2
53
1.42
22039274--22039336
27
2.4
26
81
2
81
39
6
0
53
1.26
22040104--22040151
25
2.0
24
84
8
62
50
2
2
45
1.25
22040732--22040836
30
3.5
30
75
5
86
41
14
0
43
1.45
22048330--22048412
19
4.4
19
77
18
75
71
3
1
24
1.09
22048332--22048395
18
3.3
19
76
20
60
70
4
0
25
1.06
22048339--22048395
21
2.8
20
75
15
62
71
5
0
22
1.05
22048380--22048416
8
4.5
8
86
6
56
83
0
2
13
0.74
22048331--22048394
31
2.1
31
82
5
76
71
4
0
23
1.04
22048380--22048416
17
2.2
17
90
4
58
83
0
2
13
0.74
22048489--22048541
21
2.5
22
79
14
65
50
1
5
41
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22048562--22048594
14
2.3
15
94
5
59
24
3
0
72
0.98
22048696--22048749
20
2.7
20
88
2
72
44
5
3
46
1.44
22048696--22048801
20
5.4
20
68
12
67
42
3
2
50
1.34
22048848--22048896
22
2.3
22
79
6
57
16
4
6
73
1.19
22049147--22049184
19
1.9
19
94
5
67
42
0
5
52
1.24
22049149--22049224
10
7.6
10
72
10
57
35
1
7
55
1.37
22049147--22049258
21
5.6
20
69
15
70
40
0
8
50
1.38
22049114--22049255
30
4.8
29
78
10
110
39
0
9
50
1.39
22049162--22049262
10
9.9
10
72
14
55
40
0
7
50
1.38
22049269--22049306
19
2.0
19
85
10
51
36
2
2
57
1.26
22054841--22054869
6
4.8
6
100
0
58
68
13
0
17
1.20
22054904--22055124
58
3.8
58
80
11
256
34
10
7
47
1.65
22055145--22055232
6
14.7
6
75
16
76
79
1
4
14
0.95
22055155--22055237
17
4.7
18
81
4
98
79
1
4
14
0.95
22055156--22055220
29
2.2
31
75
10
73
81
1
3
13
0.88
22055145--22055231
11
7.8
11
77
10
70
79
1
4
14
0.95
22055155--22055235
23
3.5
22
74
12
74
80
1
4
13
0.94
22056264--22056331
25
2.6
26
80
13
70
60
5
0
33
1.21
22056347--22056385
16
2.5
15
87
8
51
66
2
0
30
1.05
22056567--22056624
15
3.7
15
79
20
66
6
0
6
86
0.72
22056632--22056812
40
4.4
42
91
3
278
35
23
17
23
1.95
22056632--22056812
81
2.2
84
89
4
278
35
23
17
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22056789--22056834
22
2.1
22
100
0
92
36
21
15
26
1.93
22056811--22057067
40
6.3
40
89
3
356
37
22
14
24
1.92
22056709--22056914
104
2.0
102
93
1
349
35
24
15
24
1.94
22056668--22056954
144
2.0
142
93
3
486
35
24
16
24
1.94
22056632--22056994
184
2.0
186
90
3
581
36
23
15
23
1.94
22059788--22059841
22
2.6
21
85
8
67
7
12
0
79
0.92
22063751--22063779
6
4.8
6
100
0
58
68
13
0
17
1.20
22063814--22064103
119
2.5
114
86
6
386
34
12
7
45
1.70
22064111--22064189
15
5.3
15
73
14
58
79
1
3
15
0.93
22064114--22064201
6
14.8
6
74
15
76
79
1
4
14
0.95
22064111--22064201
34
2.7
34
81
13
100
79
1
4
15
0.95
22064114--22064200
11
7.9
11
78
10
72
79
1
4
14
0.95
22064114--22064201
17
5.3
17
78
11
85
79
1
4
14
0.95
22065231--22065293
26
2.4
26
82
12
67
60
4
0
34
1.18
22065322--22065376
28
2.0
28
89
7
85
72
3
0
23
1.00
22065322--22065374
19
2.9
18
81
15
56
73
3
0
22
0.99
22065327--22065367
7
5.1
8
83
16
50
73
2
0
24
0.96
22069644--22069699
11
5.2
11
82
4
69
35
0
8
55
1.31
22069644--22069706
22
2.9
22
85
4
74
34
0
7
57
1.28
22071492--22071526
14
2.5
14
90
0
52
40
5
0
54
1.24
22071705--22071736
14
2.3
14
100
0
64
34
0
6
59
1.23
22079921--22080010
30
3.0
30
76
9
94
42
0
4
53
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22080078--22080122
23
2.0
23
87
12
67
33
4
0
62
1.15
22081589--22081622
2
16.5
2
93
6
59
47
0
2
50
1.16
22083057--22083137
29
2.8
29
75
14
87
38
13
0
48
1.43
22083397--22083430
15
2.3
15
94
0
59
26
0
17
55
1.42
22084315--22084352
2
19.0
2
100
0
76
50
0
0
50
1.00
22084623--22084677
29
1.9
28
85
3
74
32
7
1
58
1.36
22085688--22085749
28
2.2
28
83
8
74
53
1
0
45
1.10
22087749--22087791
21
2.0
21
100
0
86
0
62
0
37
0.95
22099763--22099801
2
19.5
2
100
0
78
51
0
0
48
1.00
22100290--22100347
3
19.3
3
100
0
116
32
0
0
67
0.91
22100291--22100393
18
6.1
18
84
8
80
33
0
5
61
1.20
22102481--22102541
29
2.1
29
82
17
74
39
1
3
55
1.26
22102612--22102654
19
2.3
19
100
0
86
39
0
6
53
1.28
22107422--22107475
12
4.2
12
77
15
54
11
0
3
85
0.73
22107576--22107637
26
2.4
26
100
0
124
24
16
8
51
1.71
22108233--22108280
22
2.2
22
81
7
53
31
10
14
43
1.79
22108286--22108345
20
3.1
19
77
18
61
41
10
3
45
1.54
22109301--22109541
101
2.4
102
84
2
315
46
17
7
29
1.74
22111195--22111274
34
2.3
34
85
6
99
30
12
13
43
1.81
22111211--22111301
34
2.7
34
81
6
87
29
14
15
40
1.86
22112379--22114235
160
11.6
161
77
7
1311
42
14
8
34
1.75
22115418--22115464
23
2.1
22
84
4
58
61
6
0
31
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22115545--22115630
33
2.6
33
75
8
86
61
19
0
18
1.34
22117839--22117897
28
2.1
29
81
9
68
54
3
1
40
1.27
22118365--22118433
28
2.4
29
85
4
95
63
2
0
33
1.09
22124974--22125041
32
2.1
33
83
5
84
47
2
0
50
1.16
22134587--22134628
20
2.0
21
86
13
61
26
2
2
69
1.13
22135318--22135376
3
19.7
3
100
0
118
33
0
0
66
0.92
22137461--22137842
158
2.4
158
82
0
478
33
5
19
40
1.75
22141581--22141672
29
3.0
29
79
7
76
48
0
2
48
1.13
22141644--22141682
18
2.2
18
86
9
53
43
0
2
53
1.14
22148981--22149006
4
6.5
4
100
0
52
23
0
0
76
0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126