genome.fa.s667.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  84  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16811249--16811605	42	8.3	44	81	6	261	40	19	14	25	1.90
16811297--16811656	86	4.2	86	78	8	360	40	19	15	24	1.90
16811296--16811562	42	6.3	42	80	6	279	38	19	15	26	1.91
16811249--16811613	44	8.5	44	81	6	322	40	19	15	24	1.90
16811540--16811814	43	6.4	42	82	6	293	43	15	16	24	1.87
16812815--16812866	1	52.0	1	76	0	50	1	7	1	88	0.66
16812815--16812864	10	4.7	10	81	13	64	2	8	2	88	0.68
16812815--16812866	23	2.3	23	89	0	86	1	7	1	88	0.66
16823548--16823585	14	2.7	15	80	12	53	36	0	5	57	1.21
16823434--16823688	62	3.8	66	77	13	229	35	11	5	47	1.61
16824836--16825217	193	2.0	192	94	3	678	35	15	12	36	1.85
16825467--16825515	21	2.5	20	75	18	50	28	4	0	67	1.09
16825331--16825898	211	2.7	209	87	5	801	33	14	8	43	1.76
16826108--16826132	12	2.1	12	100	0	50	24	36	32	8	1.84
16826135--16826177	13	3.1	15	87	12	65	0	20	41	37	1.53
16826136--16826227	32	2.9	32	90	0	148	2	20	41	35	1.65
16827042--16827096	24	2.3	24	84	12	78	3	3	12	80	0.98
16827428--16827525	22	4.6	21	71	15	76	68	1	3	27	1.11
16827460--16827514	14	4.1	14	71	17	53	69	1	5	23	1.19
16827474--16827545	26	2.7	27	81	10	78	66	0	4	29	1.10
16827533--16827565	15	2.1	16	94	5	59	63	0	0	36	0.95
16834062--16834098	15	2.5	15	86	0	56	29	2	0	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16834183--16834224	14	2.9	15	82	13	52	50	0	2	47	1.14
16836634--16836671	19	2.1	19	85	5	51	5	18	0	76	0.97
16839848--16839872	2	12.5	2	100	0	50	52	0	0	48	1.00
16840322--16840763	156	2.8	156	97	0	821	37	18	14	29	1.90
16840800--16840830	1	31.0	1	100	0	62	100	0	0	0	0.00
16840838--16840892	15	3.5	16	85	9	69	1	34	43	20	1.62
16840850--16840892	5	8.6	5	85	10	61	0	34	44	20	1.52
16840838--16840899	15	4.0	15	78	4	61	3	32	45	19	1.66
16841171--16841210	18	2.1	18	86	9	53	17	27	32	22	1.96
16841820--16841855	3	12.0	3	100	0	72	66	0	0	33	0.92
16841789--16841865	9	7.8	10	80	19	58	67	2	2	27	1.17
16841820--16841869	12	3.9	14	89	10	56	66	2	2	30	1.14
16842055--16842140	1	86.0	1	75	0	64	4	0	9	86	0.71
16842048--16842140	25	3.7	24	83	14	109	5	0	9	84	0.75
16842048--16842127	41	1.9	42	89	5	126	6	0	10	83	0.80
16842048--16842126	9	9.6	9	85	14	93	6	0	10	83	0.80
16842148--16843006	41	21.0	40	89	6	1004	37	22	17	22	1.94
16842148--16843006	81	10.5	80	91	6	1203	37	22	17	22	1.94
16842148--16843006	123	7.0	123	89	5	1246	37	22	17	22	1.94
16844176--16844200	8	3.1	8	100	0	50	12	12	0	76	1.04
16844605--16844633	1	29.0	1	100	0	58	0	0	0	100	0.00
16847886--16848484	156	3.8	156	97	0	1126	37	18	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16849547--16849585	3	13.0	3	100	0	78	66	0	0	33	0.92
16849516--16849595	9	7.8	10	80	16	60	67	2	2	27	1.16
16849878--16849909	4	8.0	4	100	0	64	50	0	0	50	1.00
16850984--16851041	23	2.5	22	76	15	55	53	8	0	37	1.32
16852390--16852435	12	4.0	12	80	8	60	50	21	0	28	1.49
16852392--16852435	23	1.9	23	100	0	88	50	22	0	27	1.50
16853000--16853061	22	2.6	24	85	7	74	69	8	3	19	1.28
16855108--16855233	16	7.9	16	67	24	72	31	0	5	62	1.18
16855105--16855233	3	41.3	3	69	23	56	31	0	5	62	1.18
16855103--16855218	39	2.9	39	75	17	116	31	0	6	62	1.22
16855198--16855234	14	2.7	13	88	12	56	32	0	0	67	0.91
16856176--16856223	13	3.8	12	78	8	51	14	2	4	79	0.98
16856176--16856223	25	1.9	25	87	8	71	14	2	4	79	0.98
16856236--16856295	29	2.1	29	81	6	68	16	3	1	78	0.97
16856247--16856328	10	7.4	11	70	20	55	15	6	1	76	1.04
16856246--16856318	30	2.4	30	80	13	87	15	5	1	78	1.00
16856246--16856290	6	7.5	6	80	9	56	13	2	2	82	0.86
16856430--16856639	59	3.6	58	84	7	262	42	8	13	35	1.75
16856336--16856639	120	2.5	120	85	5	378	47	8	12	32	1.71
16860774--16860819	16	2.9	16	75	15	51	36	2	2	58	1.22
16863253--16863308	24	2.3	23	79	8	67	16	7	1	75	1.11
16865094--16865128	14	2.5	14	86	13	54	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16868162--16868187	5	5.2	5	100	0	52	0	19	0	80	0.71
16868192--16868256	4	16.8	4	75	15	57	26	1	3	69	1.12
16868189--16868286	39	2.5	38	78	14	94	27	2	4	66	1.21
16868278--16868326	17	2.7	18	84	12	57	30	2	4	63	1.24
16869381--16869428	17	2.9	17	78	6	55	12	10	2	75	1.14
16869410--16869452	17	2.5	17	85	7	52	9	6	0	83	0.80
16869400--16869449	18	2.7	18	81	15	57	10	10	2	78	1.06
16869416--16869455	21	1.9	21	90	10	64	10	5	0	85	0.75
16869379--16869449	27	2.6	26	80	8	79	11	8	1	78	1.01
16869398--16869450	10	5.5	10	80	11	58	9	9	1	79	1.02
16869486--16869703	59	3.8	57	89	8	309	44	6	14	33	1.72
16871648--16871699	22	2.5	22	90	6	81	48	0	1	50	1.12
16873635--16873664	5	5.8	5	96	4	51	83	0	0	16	0.65
16873976--16874039	19	3.1	20	82	15	69	71	0	18	9	1.12
16873976--16874022	21	2.1	24	88	11	73	72	0	19	8	1.10
16873996--16874039	18	2.4	18	92	3	70	77	0	15	6	0.97
16875250--16875542	41	7.1	41	92	1	487	22	16	24	36	1.94
16875250--16875641	124	3.0	123	87	9	513	22	16	24	36	1.94
16875250--16875641	165	2.3	166	88	7	556	22	16	24	36	1.94
16875529--16875556	14	2.0	14	100	0	56	21	14	28	35	1.92
16875488--16875596	55	2.0	54	94	1	191	21	14	26	37	1.92
16875543--16875641	40	2.4	43	89	5	150	23	14	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16875648--16875728	1	81.0	1	75	0	72	87	11	1	0	0.60
16875648--16875728	29	2.7	31	87	9	114	87	11	1	0	0.60
16875648--16875728	19	4.3	18	84	7	108	87	11	1	0	0.60
16875648--16875728	10	8.4	10	81	10	98	87	11	1	0	0.60
16875931--16876000	4	17.8	4	75	16	58	25	1	2	70	1.10
16876022--16876067	18	2.5	19	82	13	60	30	2	4	63	1.26
16876022--16876064	17	2.3	19	84	11	54	30	2	4	62	1.28
16877036--16877083	23	2.1	23	84	7	62	14	2	2	81	0.88
16877051--16877189	5	27.2	5	67	26	62	16	4	2	76	1.07
16877032--16877186	27	5.3	27	69	23	75	15	4	3	76	1.07
16877051--16877204	15	9.9	15	73	12	89	16	5	2	75	1.10
16877106--16877168	6	10.8	6	73	13	51	12	6	1	79	0.99
16877107--16877192	33	2.5	34	81	9	104	13	6	1	77	1.02
16877207--16877380	58	3.0	58	80	9	219	44	7	14	32	1.74
16878980--16879044	27	2.4	28	78	2	69	47	0	1	50	1.10
16879041--16879126	17	5.1	17	66	16	52	67	0	2	30	1.03
16879039--16879174	62	2.3	61	92	7	235	66	0	2	30	1.06
16879409--16879450	19	2.2	19	95	0	75	52	7	4	35	1.50
16882268--16882305	3	12.7	3	100	0	76	34	0	0	65	0.93
16882565--16882605	5	8.4	5	79	15	50	19	0	2	78	0.87
16882845--16882883	17	2.3	17	86	8	53	66	12	5	15	1.41
16883208--16883237	14	2.2	13	94	5	51	63	0	36	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16883659--16883771	57	2.0	57	98	0	217	61	5	6	27	1.42
16886558--16886605	24	2.0	25	83	4	62	22	2	4	70	1.15
16887582--16887637	19	2.9	18	92	5	85	58	5	3	32	1.37
16888785--16888835	25	2.0	25	100	0	102	11	0	23	64	1.26
16888782--16888829	13	3.7	14	76	18	59	12	0	20	66	1.24
16889607--16889643	14	2.6	14	86	0	56	0	13	0	86	0.57
16889607--16889639	15	2.2	15	89	10	50	0	12	0	87	0.53
16893058--16893109	16	3.3	16	71	13	54	61	1	3	32	1.25
16893497--16893539	20	2.2	20	100	0	86	62	0	4	32	1.15
16896571--16896609	2	19.5	2	89	0	51	51	7	0	41	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126