genome.fa.s667.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  58  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11707236--11707269	18	1.9	17	88	5	50	55	5	0	38	1.24
11708242--11708290	14	3.6	14	77	5	55	57	2	0	40	1.10
11708311--11708369	31	1.9	31	85	0	82	38	8	1	50	1.43
11709718--11709755	20	1.9	20	88	0	58	26	0	0	73	0.83
11709738--11709793	22	2.5	23	82	11	71	42	0	1	55	1.10
11737428--11737490	31	2.0	31	84	6	83	46	0	1	52	1.10
11743103--11743139	15	2.3	17	81	13	51	45	0	0	54	1.00
11743337--11743592	125	2.0	126	95	2	460	38	14	15	31	1.88
11744392--11744416	12	2.1	12	100	0	50	68	0	0	32	0.90
11746890--11747322	143	3.0	143	61	14	341	41	4	7	46	1.51
11746796--11747382	285	2.0	286	97	0	1113	41	4	6	47	1.50
11748811--11748863	21	2.6	21	88	11	83	47	0	0	52	1.00
11748811--11748862	22	2.5	22	93	6	90	48	0	0	51	1.00
11750365--11750455	45	2.0	45	93	0	155	36	18	8	36	1.82
11750368--11750484	45	2.8	43	84	10	136	39	15	6	38	1.74
11750488--11750531	22	2.0	23	86	13	65	52	0	0	47	1.00
11750782--11750825	23	2.0	22	86	4	61	36	0	2	61	1.09
11761935--11761983	24	2.0	24	100	0	98	24	34	4	36	1.75
11776017--11776057	13	2.7	15	75	24	50	43	9	7	39	1.65
11786336--11786477	29	4.8	29	73	10	110	51	0	6	42	1.27
11786336--11786466	30	4.5	29	74	16	103	51	0	6	41	1.26
11788175--11788249	34	2.2	35	85	2	98	44	8	10	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11788194--11788266	34	2.1	34	85	7	94	47	5	8	38	1.56
11791065--11791113	20	2.5	20	86	6	73	48	0	0	51	1.00
11795935--11795995	30	2.0	30	100	0	122	59	6	6	27	1.48
11796300--11796361	24	2.6	24	76	16	67	46	1	4	46	1.33
11798978--11799035	22	2.6	22	81	5	64	43	6	6	43	1.58
11798997--11799039	22	2.0	22	95	0	77	46	4	4	44	1.45
11803259--11803341	14	5.9	14	69	24	59	65	2	0	32	1.06
11803261--11803346	19	4.7	18	69	23	63	65	2	0	32	1.06
11803261--11803358	20	5.2	19	68	21	64	63	3	0	33	1.10
11809250--11809298	18	2.8	18	74	20	50	40	4	4	51	1.40
11810298--11810359	21	3.0	20	79	11	70	37	4	3	54	1.38
11810298--11810343	20	2.2	20	88	7	65	36	6	2	54	1.39
11810298--11810352	22	2.6	21	85	5	76	38	5	3	52	1.42
11810877--11810908	16	2.0	16	93	0	55	65	0	0	34	0.93
11810958--11811054	33	3.0	33	85	10	121	50	2	1	46	1.20
11811171--11811204	18	1.9	17	88	5	50	41	5	0	52	1.25
11811569--11811610	17	2.5	17	88	7	59	50	4	14	30	1.63
11812765--11812800	16	2.1	18	90	10	58	55	8	8	27	1.58
11812763--11812807	18	2.5	19	76	23	53	62	6	6	24	1.44
11812808--11812845	16	2.2	18	86	13	53	52	0	0	47	1.00
11812815--11812862	22	2.2	21	85	10	62	54	0	0	45	0.99
11813076--11813238	77	2.1	77	93	2	274	36	13	4	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11815314--11815349	2	18.0	2	94	0	63	47	0	2	50	1.15
11815378--11815470	32	2.9	32	75	9	93	50	0	0	49	1.00
11816006--11816087	41	2.0	41	95	0	146	36	19	13	30	1.90
11816341--11816375	18	1.9	18	88	0	52	34	0	0	65	0.93
11816352--11816407	29	2.0	28	85	3	76	46	0	0	53	1.00
11817860--11817905	23	2.0	22	87	4	65	73	0	2	23	0.94
11818210--11818235	2	13.0	2	100	0	52	50	0	0	50	1.00
11824128--11824164	14	2.6	15	79	12	51	48	0	0	51	1.00
11841200--11841279	29	2.8	27	72	25	67	50	2	0	47	1.14
11848279--11848326	25	2.0	24	87	4	69	43	0	2	54	1.12
11854921--11854980	25	2.4	25	80	5	59	60	3	5	31	1.35
11855075--11855102	6	4.7	6	100	0	56	85	0	0	14	0.59
11865656--11865694	4	9.8	4	94	0	69	53	23	0	23	1.46
11871194--11871227	2	17.0	2	93	0	59	52	0	0	47	1.00
11873427--11873457	3	10.3	3	100	0	62	64	0	0	35	0.94
11876415--11876481	35	1.9	35	88	8	102	38	4	1	55	1.29
11880719--11880764	19	2.3	20	85	3	58	52	2	0	45	1.13
11881137--11881192	17	3.3	16	79	18	60	53	0	0	46	1.00
11881134--11881192	18	3.3	19	76	21	65	54	0	0	45	0.99
11883847--11883876	7	4.3	7	91	0	51	76	0	10	13	1.01
11886757--11886823	27	2.4	27	82	2	80	22	17	17	41	1.90
11889841--11889871	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11895881--11895907	4	6.8	4	100	0	54	25	0	22	51	1.48
11899773--11899810	18	2.1	18	85	9	51	57	0	5	36	1.21
11908454--11908716	124	2.1	125	88	0	393	38	19	5	36	1.75
11912778--11912840	21	3.0	21	80	0	81	34	28	14	22	1.93
11918170--11918201	15	2.1	16	88	11	50	9	12	18	59	1.59
11918358--11918421	30	2.1	30	88	5	94	62	1	12	23	1.38
11918545--11918617	30	2.4	30	80	8	85	50	1	6	41	1.37
11930161--11930211	22	2.3	22	83	6	68	45	9	5	39	1.62
11930205--11930484	22	12.9	22	70	5	102	54	5	7	32	1.51
11930295--11930324	14	2.1	15	93	6	53	63	6	0	30	1.20
11930205--11930395	65	2.9	65	74	6	179	53	5	7	32	1.52
11930217--11930440	87	2.6	87	78	9	199	54	4	8	32	1.52
11930289--11930485	65	3.0	65	77	8	170	55	5	7	30	1.51
11930837--11931145	44	7.2	44	75	9	185	49	5	8	36	1.55
11930870--11931041	22	7.8	22	76	10	102	49	4	8	37	1.53
11930942--11931145	22	9.6	21	73	14	141	50	4	6	37	1.51
11930942--11931151	104	2.0	104	81	7	248	49	5	6	38	1.52
11931167--11931214	22	2.3	20	86	10	62	54	10	4	31	1.53
11931209--11931277	22	3.2	22	70	4	68	47	11	11	28	1.75
11931246--11931295	22	2.2	22	82	13	57	48	8	16	28	1.74
11931290--11931432	22	6.5	22	76	7	121	44	3	10	41	1.56
11931316--11931417	11	9.3	11	72	12	57	45	4	9	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11931289--11931417	66	2.0	66	84	3	170	44	3	10	41	1.58
11931431--11931535	22	4.8	22	74	4	95	45	9	6	38	1.63
11931431--11931528	44	2.2	44	79	0	106	44	9	7	38	1.64
11931493--11931594	44	2.3	44	81	1	116	44	4	6	44	1.52
11931493--11931607	22	5.3	22	74	1	88	43	4	7	44	1.53
11931891--11931953	23	2.8	22	80	9	74	44	9	11	34	1.73
11931891--11931942	21	2.3	23	87	6	72	44	9	11	34	1.73
11931962--11932013	21	2.4	21	81	9	52	50	5	9	34	1.59
11937579--11937671	40	2.4	40	89	3	136	13	1	63	21	1.36
11937906--11937943	20	2.0	20	89	5	60	34	0	5	60	1.19
11938167--11938215	25	1.9	26	87	4	73	46	2	8	42	1.45
11942004--11942128	18	6.9	18	71	17	98	32	34	5	28	1.80
11942008--11942050	21	2.0	21	90	0	68	25	41	4	27	1.75
11943772--11943819	20	2.5	19	83	6	60	64	4	4	27	1.30
11943790--11943840	24	2.1	24	85	0	66	74	5	1	17	1.11
11944226--11944264	20	2.0	20	89	0	60	35	0	5	58	1.20
11945004--11945038	17	2.1	17	88	0	52	20	8	8	62	1.49
11947720--11947970	139	1.8	137	83	5	333	47	6	4	41	1.50
11948162--11948194	2	16.5	2	100	0	66	51	48	0	0	1.00
11948194--11948221	2	14.0	2	100	0	56	50	0	0	50	1.00
11950087--11950144	3	20.0	3	85	7	84	32	0	1	65	1.03
11950879--11950930	21	2.5	20	79	14	52	19	9	5	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11952231--11952286	17	3.3	17	82	5	69	44	3	1	50	1.29
11956306--11956437	14	10.3	13	68	21	57	37	4	2	56	1.33
11956318--11956354	17	2.2	16	95	4	65	40	5	0	54	1.24
11956330--11956419	24	3.8	24	76	10	94	35	6	2	55	1.38
11957144--11957180	6	5.4	7	90	9	51	29	2	0	67	1.04
11957152--11957204	10	5.2	10	73	13	54	33	0	3	62	1.13
11957152--11957204	22	2.6	20	82	11	63	33	0	3	62	1.13
11967744--11967796	9	6.0	9	78	12	65	84	0	13	1	0.69
11967746--11967795	8	5.9	8	80	19	57	86	0	12	2	0.67
11967745--11967807	11	5.2	12	75	13	58	84	0	12	3	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126