genome.fa.s667.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  79  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16058872--16058917	20	2.3	20	82	10	60	50	2	0	47	1.13
16062605--16062649	21	2.2	20	84	4	54	37	0	0	62	0.96
16064148--16064199	13	3.3	16	78	19	56	42	0	0	57	0.98
16064163--16064219	25	2.3	26	79	11	66	50	1	0	47	1.11
16064170--16064204	13	2.6	14	86	13	56	51	0	0	48	1.00
16065074--16065132	28	2.1	27	87	3	82	59	1	0	38	1.08
16067251--16067299	25	1.9	26	84	12	66	44	0	4	51	1.20
16067601--16067659	20	2.8	22	78	17	63	50	0	0	49	1.00
16067629--16067658	15	2.0	15	93	0	51	50	0	0	50	1.00
16068436--16068516	33	2.5	33	89	4	119	33	24	14	27	1.95
16073136--16073163	2	14.0	2	100	0	56	50	0	0	50	1.00
16075049--16075101	5	10.4	5	76	11	54	43	0	0	56	0.99
16076396--16076439	21	2.1	21	87	4	63	72	2	2	22	1.07
16076747--16076836	11	7.9	11	69	7	54	46	4	8	40	1.55
16076741--16076810	22	3.0	22	80	11	77	45	4	7	42	1.51
16076846--16077016	22	7.8	22	72	6	107	45	7	9	38	1.64
16077426--16077492	21	3.2	20	82	4	80	52	5	7	34	1.54
16077693--16077753	30	2.0	31	83	3	79	36	8	4	50	1.54
16080206--16080639	209	2.0	217	84	6	580	41	10	9	38	1.73
16081648--16081731	42	2.0	42	97	0	159	33	19	5	41	1.75
16082370--16082404	18	1.9	18	88	0	52	62	8	2	25	1.38
16083248--16083285	18	2.0	20	90	10	62	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16083774--16083822	24	2.0	24	84	0	62	40	12	4	42	1.61
16087349--16087436	29	3.0	29	76	11	108	31	4	2	61	1.28
16087337--16087450	58	1.9	59	87	5	169	32	4	5	57	1.40
16088696--16088743	18	2.7	18	87	6	71	35	25	6	33	1.81
16097551--16097597	21	2.2	21	84	0	67	25	4	4	65	1.29
16104009--16104035	13	2.1	13	100	0	54	29	0	0	70	0.88
16104280--16104369	30	3.0	30	79	7	85	35	15	2	46	1.58
16108197--16108228	16	1.9	17	93	6	57	50	6	0	43	1.27
16108370--16108430	24	2.6	22	82	12	77	42	3	4	49	1.40
16112088--16112122	2	18.0	2	94	5	63	51	0	0	48	1.00
16112087--16112121	17	2.1	17	100	0	70	54	0	0	45	0.99
16112090--16112119	15	2.0	15	100	0	60	53	0	0	46	1.00
16115927--16115965	16	2.4	17	91	4	62	25	2	7	64	1.33
16115927--16115980	16	3.3	16	82	12	58	27	1	7	62	1.32
16117653--16117705	23	2.3	23	80	9	54	37	0	5	56	1.23
16118099--16118141	2	21.5	2	85	0	59	51	0	0	48	1.00
16124929--16125005	38	2.0	38	92	0	127	29	32	5	32	1.80
16127844--16127874	2	16.0	2	93	6	55	51	0	0	48	1.00
16137035--16137070	16	2.2	16	90	0	54	58	0	0	41	0.98
16137413--16137465	20	2.5	21	72	6	54	54	0	1	43	1.11
16139179--16139257	21	4.0	21	69	24	64	49	1	0	49	1.09
16139754--16139887	62	2.2	63	79	5	148	38	7	5	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16142428--16143010	70	8.2	69	75	11	400	46	7	8	37	1.63
16143045--16143121	37	2.1	37	85	0	100	49	5	1	44	1.33
16143224--16143304	37	2.2	37	93	0	135	50	4	1	43	1.31
16144420--16144451	2	16.0	2	93	0	55	46	0	3	50	1.17
16146460--16146687	62	3.7	59	78	9	188	35	9	11	42	1.75
16146490--16146687	63	3.2	62	80	7	197	34	9	12	43	1.74
16146449--16146687	63	3.9	62	77	12	190	35	9	12	43	1.75
16147842--16147907	20	3.2	20	75	14	55	43	3	10	42	1.54
16147926--16147992	34	2.0	34	81	0	80	41	8	7	41	1.64
16148182--16148262	36	2.3	35	84	2	99	46	4	1	46	1.32
16149028--16149073	22	2.0	23	83	4	58	56	8	26	8	1.58
16149910--16150006	46	2.1	46	94	3	169	43	8	8	40	1.65
16151161--16151193	16	2.1	16	94	0	57	54	6	15	24	1.63
16154293--16154327	18	1.9	18	88	11	54	28	0	0	71	0.86
16154401--16154435	18	2.0	17	88	5	52	68	5	2	22	1.24
16160429--16160564	62	2.2	62	89	2	204	33	10	11	45	1.73
16166203--16166312	32	3.5	31	77	10	98	50	2	0	46	1.22
16166252--16166333	31	2.5	32	79	15	80	48	1	0	50	1.08
16166224--16166308	25	3.6	24	67	19	63	48	1	1	49	1.16
16167340--16167387	24	2.0	24	95	0	87	16	25	10	47	1.78
16171282--16171313	15	2.1	15	94	0	55	31	0	3	65	1.08
16173119--16173166	24	2.0	24	88	8	71	77	0	6	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16173354--16173406	27	2.0	27	85	7	72	26	0	3	69	1.05
16175117--16175190	38	1.9	38	83	5	96	20	6	4	68	1.29
16175167--16175241	38	2.0	38	100	0	150	38	5	0	56	1.22
16176502--16176569	34	2.0	34	100	0	136	55	0	17	26	1.42
16177428--16177462	16	2.2	16	89	0	52	20	0	5	74	1.02
16179895--16179939	22	2.1	21	84	12	56	62	0	4	33	1.15
16181558--16181607	16	3.4	16	73	21	63	22	8	10	60	1.55
16182319--16182353	18	2.0	17	88	5	52	68	5	2	22	1.24
16182948--16183085	69	2.0	69	97	0	258	33	12	14	39	1.83
16183129--16183191	32	2.0	32	100	0	126	38	14	25	22	1.92
16183107--16183273	82	2.0	82	100	0	334	40	13	26	19	1.88
16183211--16183275	32	2.0	32	100	0	130	38	15	24	21	1.92
16183869--16183920	27	1.9	27	84	0	68	57	0	5	36	1.23
16189584--16190022	143	3.0	147	83	7	542	39	17	10	33	1.83
16190969--16190998	12	2.5	12	88	0	51	60	0	0	40	0.97
16194039--16194506	58	8.0	58	84	6	568	35	13	6	44	1.70
16194041--16194516	117	4.0	116	89	4	677	35	13	6	44	1.70
16194514--16194595	24	3.5	23	80	8	76	79	1	7	12	0.99
16194513--16194608	19	5.1	18	74	15	79	78	1	7	13	1.01
16194515--16194595	29	2.7	30	83	9	85	79	1	7	12	1.00
16194513--16194602	5	18.8	5	75	14	66	78	1	6	13	0.99
16194626--16194670	4	11.8	4	86	9	67	73	2	0	24	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16194589--16194668	11	6.9	11	72	19	65	68	5	1	25	1.17
16194626--16194668	15	2.9	15	86	10	61	74	2	0	23	0.93
16195100--16195136	19	1.9	19	94	0	65	43	18	8	29	1.79
16195525--16195628	3	33.7	3	72	21	58	67	1	1	28	1.12
16195554--16195705	4	38.2	4	72	20	83	69	2	0	27	1.07
16195571--16195633	23	2.7	23	78	14	67	68	0	0	31	0.90
16195523--16195785	62	4.1	62	69	20	168	67	3	2	26	1.20
16197235--16197300	29	2.3	28	84	5	78	48	9	13	28	1.73
16200906--16200944	21	1.9	21	89	5	62	43	12	0	43	1.42
16207945--16208000	17	3.4	17	78	9	55	33	5	0	60	1.19
16209935--16209965	2	15.5	2	93	0	53	48	3	0	48	1.17
16210248--16210290	21	2.0	21	83	16	54	44	4	4	46	1.45
16210248--16210290	22	2.0	20	86	8	59	44	4	4	46	1.45
16212599--16212628	2	15.0	2	100	0	60	50	0	0	50	1.00
16214427--16214465	18	2.2	18	95	0	69	25	0	64	10	1.25
16214561--16214612	6	8.7	6	80	0	50	9	1	69	19	1.26
16214561--16214613	21	2.5	21	87	0	79	9	3	67	18	1.33
16214680--16214720	18	2.3	18	86	0	55	9	2	65	21	1.34
16214686--16214728	21	2.1	20	86	4	59	11	2	67	18	1.32
16214676--16214718	15	2.8	16	79	6	54	13	2	62	20	1.42
16214740--16214793	18	3.0	18	77	0	54	20	9	42	27	1.82
16214806--16214839	9	3.8	9	88	0	50	20	0	64	14	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16215345--16215407	29	2.2	28	83	16	76	30	1	3	65	1.18
16215357--16215420	29	2.2	32	78	16	75	34	3	1	60	1.22
16220114--16220141	11	2.5	11	100	0	56	14	46	21	17	1.84
16220130--16220179	19	2.6	19	87	6	66	28	34	18	20	1.95
16220398--16220440	5	8.6	5	85	10	61	20	44	34	0	1.52
16220452--16220484	17	1.9	17	93	0	57	12	0	6	81	0.85
16220515--16221110	156	3.8	156	98	0	1147	29	14	18	38	1.90
16221628--16221679	15	3.1	15	72	27	50	34	13	11	40	1.81
16225267--16225296	16	1.9	16	93	6	53	60	0	0	40	0.97
16233501--16233581	37	2.2	36	82	12	101	62	6	1	29	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126