genome.fa.s667.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  55  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10891860--10891934	22	3.3	21	71	14	53	36	6	14	42	1.72
10892250--10892402	52	3.0	50	76	9	155	36	11	11	40	1.77
10892312--10892383	17	4.1	18	71	18	53	44	8	9	37	1.68
10892302--10892378	35	2.2	34	83	2	91	41	9	9	40	1.68
10892505--10892550	16	2.8	17	80	9	51	32	17	15	34	1.91
10892644--10892845	43	4.7	43	81	8	207	28	10	15	45	1.80
10892644--10892845	85	2.3	84	82	9	237	28	10	15	45	1.80
10892646--10892876	43	5.4	41	79	10	196	30	9	15	45	1.77
10892689--10892876	86	2.2	85	84	6	238	31	9	15	43	1.79
10892690--10892918	43	5.4	42	80	9	178	31	8	15	44	1.77
10894362--10894390	12	2.3	13	94	5	51	13	10	0	75	1.04
10894482--10894538	21	2.8	21	81	2	71	28	8	12	50	1.69
10904415--10904553	42	3.3	42	77	10	147	25	9	18	46	1.79
10904426--10904584	41	3.7	41	76	11	149	23	10	17	47	1.79
10904426--10904554	41	3.0	41	78	11	152	24	10	18	46	1.81
10904427--10904587	86	1.9	87	84	5	218	23	10	16	49	1.77
10904808--10904862	29	1.9	28	82	10	67	16	10	3	69	1.32
10908295--10908686	163	2.5	158	80	8	429	46	6	9	37	1.63
10908379--10908709	163	2.0	164	84	2	434	48	6	9	35	1.61
10913764--10913797	17	2.0	17	88	0	50	17	8	29	44	1.79
10915656--10915708	14	3.6	14	78	14	52	79	5	9	5	1.06
10919784--10919830	24	1.9	25	82	4	60	42	8	6	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10922672--10922707	15	2.4	16	86	13	58	66	13	5	13	1.41
10923214--10923360	68	2.2	68	82	4	172	44	13	7	34	1.72
10923235--10923361	68	1.9	68	89	0	200	44	14	6	35	1.70
10933144--10933188	21	2.1	21	83	0	54	22	2	8	66	1.30
10935207--10935331	50	2.6	49	77	5	121	34	14	9	41	1.78
10938073--10938107	17	2.1	17	94	0	61	42	25	0	31	1.55
10943558--10943587	15	2.0	15	100	0	60	20	20	26	33	1.97
10952027--10952074	24	2.0	24	100	0	96	33	16	16	33	1.92
10953107--10953169	3	21.0	3	100	0	126	66	0	0	33	0.92
10954876--10954939	17	3.7	17	70	4	56	31	15	18	34	1.93
10955094--10955154	17	3.6	17	78	8	61	42	6	14	36	1.72
10955094--10955163	34	2.1	34	83	0	86	44	7	12	35	1.70
10955413--10955675	135	1.9	136	80	5	300	43	16	5	34	1.70
10955549--10955811	90	2.9	90	76	11	216	40	13	7	38	1.72
10960853--10960892	21	1.9	21	89	0	62	45	17	5	32	1.70
10961005--10961058	3	18.0	3	100	0	108	66	0	0	33	0.92
10961112--10961141	6	4.8	6	95	4	51	66	13	3	16	1.37
10967605--10967630	2	13.0	2	100	0	52	50	0	0	50	1.00
10972657--10972690	17	2.0	17	88	11	52	82	0	14	2	0.79
10979018--10979052	12	2.9	12	91	0	52	11	14	20	54	1.70
10984963--10984996	12	3.0	11	87	8	50	85	0	0	14	0.60
10984965--10985001	18	2.1	18	94	0	65	81	0	2	16	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10985026--10985058	3	11.0	3	93	0	57	63	0	3	33	1.10
10985324--10985364	15	2.7	15	80	0	55	0	36	0	63	0.95
10985779--10985902	26	4.7	26	80	11	119	66	0	4	29	1.16
10985802--10985899	8	14.3	7	69	20	57	66	1	4	28	1.17
10985786--10985867	22	3.6	22	80	13	85	65	1	3	29	1.17
10985779--10985899	49	2.4	48	84	10	138	66	0	4	28	1.16
10985763--10985903	14	9.5	14	66	27	53	68	1	3	26	1.15
10985779--10985904	51	2.5	51	81	8	134	66	0	3	28	1.15
10986107--10986232	41	3.1	41	88	4	191	42	16	12	27	1.85
10986107--10986255	41	3.6	39	85	12	176	44	15	12	27	1.83
10986198--10986337	41	3.4	41	80	7	140	47	13	13	25	1.80
10986247--10986327	43	1.9	42	89	2	126	45	16	13	24	1.83
10987363--10987395	10	3.4	10	91	8	59	0	9	0	90	0.44
10987363--10987394	9	3.4	9	95	4	55	0	9	0	90	0.45
10997518--10997775	129	2.0	129	97	0	489	36	17	13	32	1.88
10998111--10998141	14	2.2	14	94	0	53	38	0	0	61	0.96
10998093--10998319	58	3.9	57	85	6	296	39	11	2	46	1.54
10998325--10998372	11	4.2	11	76	10	51	77	0	4	18	0.93
10998404--10998438	3	11.7	3	87	0	52	65	2	2	28	1.21
10999144--10999255	25	4.5	25	80	15	133	62	0	4	32	1.21
10999145--10999272	47	2.8	47	82	7	129	63	0	3	32	1.18
10999238--10999288	6	8.8	6	91	8	72	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10999213--10999288	24	3.2	24	80	16	79	65	0	2	31	1.06
10999669--10999712	24	1.9	23	86	9	63	36	11	2	50	1.51
10999669--10999714	23	2.1	22	84	8	58	39	10	2	47	1.51
11003517--11003554	12	3.4	11	89	7	51	44	5	10	39	1.61
11003523--11003554	12	2.7	12	90	0	55	46	6	9	37	1.61
11007612--11007641	14	2.1	15	93	6	53	23	26	6	43	1.78
11016731--11016913	91	2.0	91	98	0	357	26	30	10	32	1.90
11022880--11022973	47	2.0	47	82	0	116	35	29	19	15	1.93
11026492--11026537	17	2.8	16	80	9	56	43	28	10	17	1.82
11029949--11030045	47	2.1	47	88	3	142	35	28	19	16	1.94
11038615--11038668	28	2.0	28	88	3	83	24	22	22	31	1.98
11040714--11040765	18	2.8	18	75	13	52	28	3	23	44	1.71
11040820--11040991	8	22.4	8	65	17	53	22	2	27	47	1.66
11040804--11040922	22	5.4	22	67	17	59	25	1	24	48	1.60
11040907--11040958	27	2.0	26	88	3	77	17	1	34	46	1.59
11041042--11041096	29	1.9	29	88	3	85	18	1	23	56	1.51
11041044--11041150	43	2.5	43	83	3	135	15	0	28	54	1.48
11040981--11041148	15	11.3	15	68	16	91	19	2	27	51	1.59
11043617--11043695	12	6.7	12	75	2	79	40	3	15	40	1.65
11043607--11043714	47	2.3	47	100	0	216	37	7	18	36	1.79
11043641--11043714	23	3.2	23	65	3	67	37	8	16	37	1.78
11043713--11043783	27	2.6	29	80	10	87	40	14	21	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11043723--11043784	28	2.2	29	82	8	83	41	12	20	24	1.87
11043830--11043895	33	1.9	35	84	6	91	30	13	21	34	1.92
11044048--11044168	32	3.7	32	79	10	129	34	18	17	29	1.94
11044085--11044204	34	3.6	33	77	8	118	32	16	18	32	1.93
11044053--11044208	66	2.4	66	86	0	213	33	17	16	32	1.92
11044591--11044651	31	1.9	32	86	3	88	31	18	14	36	1.91
11044490--11044759	86	3.1	84	79	6	265	27	16	20	35	1.94
11044676--11044764	32	2.8	31	81	9	101	30	14	19	35	1.91
11045649--11045696	15	3.3	14	79	5	51	2	18	0	79	0.84
11045649--11045709	22	2.7	23	82	10	72	1	18	0	80	0.80
11045655--11045719	29	2.2	29	83	10	78	4	18	0	76	0.95
11046998--11047030	17	1.9	17	93	0	57	3	12	3	81	0.91
11046993--11047057	9	7.3	9	77	8	71	3	21	1	73	1.05
11049178--11049367	97	2.0	96	95	1	344	34	5	17	42	1.72
11050529--11050579	25	2.0	25	82	14	61	66	7	5	19	1.38
11052423--11052481	17	3.6	17	71	17	54	23	0	32	44	1.54
11052570--11052638	15	4.8	15	72	15	56	24	0	23	52	1.48
11054876--11054917	21	2.0	21	85	4	57	59	19	7	14	1.57
11069905--11069946	19	2.3	19	87	4	59	69	14	0	16	1.20
11069904--11069947	18	2.5	17	82	10	52	65	13	0	20	1.26
11081589--11081635	24	2.0	24	86	0	67	27	14	25	31	1.95
11094507--11094553	22	2.1	22	88	0	67	25	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11097052--11097150	45	2.2	45	82	7	121	34	21	20	24	1.97
11104464--11104511	24	2.0	24	84	8	62	16	16	6	60	1.55
11109160--11109222	33	1.9	33	86	0	90	26	14	33	25	1.94
11115416--11115458	20	2.2	20	100	0	86	18	9	44	27	1.80
11119307--11119359	22	2.4	22	78	12	63	33	28	11	26	1.91
11132028--11132102	29	2.4	30	80	8	89	44	0	2	53	1.14
11132028--11132121	29	3.1	29	77	14	77	41	1	3	54	1.23
11132085--11132172	25	3.5	25	78	9	90	40	4	2	52	1.34
11132208--11132254	23	2.0	23	83	0	58	61	4	2	31	1.27
11133388--11133433	21	2.3	19	85	14	65	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126