genome.fa.s667.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  42  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8465453--8465492	21	1.9	21	84	0	53	25	35	2	37	1.69
8472667--8472765	6	17.2	6	80	8	107	65	17	0	17	1.27
8472664--8472763	9	11.2	9	80	2	103	66	16	0	18	1.26
8472682--8472757	15	5.1	15	81	15	104	65	18	0	15	1.27
8472673--8472815	18	8.0	19	71	20	76	61	21	0	16	1.34
8474878--8476017	228	5.0	228	83	2	1205	29	22	23	24	1.99
8474878--8476016	456	2.5	455	84	1	1377	29	22	23	24	1.99
8476011--8476448	229	1.9	229	92	2	738	20	10	23	45	1.81
8478226--8478288	2	31.5	2	80	0	54	1	11	50	36	1.47
8478230--8478288	6	9.8	6	84	0	64	1	11	50	35	1.49
8479809--8479926	31	3.8	31	76	10	107	38	5	7	49	1.54
8493230--8493378	2	79.5	2	70	17	61	42	0	1	56	1.07
8493224--8493371	17	8.2	18	70	14	90	41	0	0	58	1.03
8493224--8493290	19	3.7	19	82	9	86	37	0	0	62	0.95
8493281--8493320	19	2.0	20	95	4	73	65	0	0	35	0.93
8495998--8496097	45	2.2	45	81	0	110	31	18	20	31	1.96
8496028--8496216	22	8.5	22	76	10	143	28	21	20	29	1.98
8499574--8499623	20	2.4	21	83	3	57	64	4	12	20	1.43
8500753--8500840	21	4.4	20	77	13	85	32	5	13	47	1.66
8501001--8501187	103	1.8	102	87	4	277	42	13	10	33	1.78
8505400--8505429	15	1.9	15	93	6	51	90	0	6	3	0.56
8505728--8505765	10	3.9	10	79	6	51	81	2	13	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8506877--8506974	46	2.2	43	79	12	101	34	7	14	43	1.72
8506896--8507046	46	3.3	47	80	10	170	31	5	15	46	1.70
8506896--8507092	46	4.3	45	79	8	166	32	5	15	46	1.69
8506921--8507143	47	4.9	45	75	10	170	33	5	14	45	1.69
8507334--8507377	17	2.6	17	85	0	52	38	11	15	34	1.84
8507369--8507404	16	2.2	16	95	0	63	36	13	13	36	1.85
8508119--8508164	11	4.3	11	86	10	60	23	0	10	65	1.24
8508184--8508231	19	2.5	19	93	0	87	75	4	6	14	1.16
8509181--8509218	16	2.3	17	81	4	51	21	2	0	76	0.91
8509368--8509444	20	3.7	22	78	13	67	35	5	9	50	1.56
8509384--8509445	22	2.9	22	80	7	83	33	4	8	53	1.52
8509595--8509788	102	1.9	104	87	5	286	42	10	8	38	1.70
8519610--8519642	16	2.0	17	94	5	59	36	0	3	60	1.12
8519980--8520621	358	1.8	351	83	5	853	44	8	6	41	1.59
8520595--8520868	136	2.0	136	87	1	388	40	10	7	40	1.68
8520731--8523326	181	14.6	180	75	7	1814	40	9	9	40	1.70
8520731--8523313	541	4.8	540	75	7	2048	40	9	9	40	1.70
8521419--8523326	180	10.7	181	77	5	1499	39	9	9	41	1.70
8523417--8529914	714	9.1	710	75	9	3757	40	7	9	41	1.67
8526582--8526617	16	2.1	17	90	10	56	44	5	11	38	1.63
8523417--8529478	180	33.8	181	74	9	3741	40	7	9	41	1.67
8529876--8529962	44	2.0	44	90	4	140	37	4	10	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8529695--8530137	221	2.0	222	82	5	538	40	6	10	42	1.64
8529916--8530652	179	4.2	180	77	10	554	40	7	9	43	1.64
8530530--8530784	132	1.9	132	82	7	313	37	6	7	49	1.56
8530656--8533383	180	15.3	180	76	8	2038	40	7	9	42	1.66
8531369--8531401	17	2.0	17	88	5	50	54	0	6	39	1.25
8530668--8533377	539	5.1	535	77	8	2216	40	7	9	42	1.66
8534182--8534229	20	2.4	20	100	0	96	18	27	22	31	1.97
8535102--8535187	43	2.0	42	93	2	145	31	31	4	32	1.78
8540233--8541150	362	2.5	354	75	8	819	41	8	7	42	1.64
8540145--8541162	181	5.7	180	75	5	621	42	9	7	41	1.65
8541146--8541196	20	2.5	20	100	0	102	35	13	0	50	1.42
8541628--8541968	185	1.8	185	81	4	418	37	9	10	43	1.71
8541349--8543237	181	10.5	180	74	9	1155	40	8	9	40	1.69
8541634--8543215	360	4.4	364	75	10	905	40	8	9	41	1.69
8541647--8543223	716	2.2	715	78	8	1509	40	8	9	40	1.69
8541861--8547892	539	11.4	532	73	11	1734	40	8	9	41	1.68
8543646--8544464	176	4.8	175	75	9	460	43	7	8	40	1.64
8543982--8544017	18	2.0	18	89	10	56	38	0	2	58	1.13
8544037--8544077	20	2.0	20	86	9	57	53	4	7	34	1.50
8544007--8544298	160	1.8	162	85	5	412	45	7	7	38	1.62
8544167--8544641	179	2.7	176	82	8	554	42	7	9	40	1.67
8544142--8548153	181	22.6	177	74	11	1938	40	8	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8544779--8544816	19	2.0	19	89	0	58	39	2	13	44	1.57
8544908--8548107	181	17.9	179	76	8	2324	40	8	9	41	1.67
8544915--8547969	358	8.6	361	76	8	2307	40	8	9	41	1.67
8546242--8553901	541	14.2	532	71	12	2744	40	8	9	41	1.67
8548282--8553921	180	31.1	180	73	9	3366	40	8	9	41	1.67
8548282--8553921	722	7.8	719	75	8	3947	40	8	9	41	1.67
8553146--8553207	17	3.6	17	81	14	83	54	4	8	32	1.51
8553192--8553921	181	4.0	178	76	8	535	40	9	9	40	1.69
8554052--8554578	181	2.9	180	78	7	435	38	9	9	42	1.70
8554479--8554699	120	1.8	119	84	2	300	33	10	7	48	1.66
8554302--8554855	301	1.8	301	85	1	770	39	9	7	43	1.67
8554855--8558836	181	22.2	180	76	6	2909	42	9	8	40	1.68
8555762--8555799	20	1.9	19	89	5	58	60	10	0	28	1.30
8555618--8556136	172	3.0	171	79	9	455	44	10	7	37	1.67
8554601--8558836	721	5.9	711	76	8	2836	42	9	8	40	1.67
8554876--8558836	359	11.1	356	74	9	2615	42	9	8	40	1.67
8554623--8558792	539	7.8	535	74	9	2597	42	9	7	40	1.67
8558745--8558941	99	2.0	100	84	5	256	35	7	10	47	1.65
8560518--8560555	15	2.5	15	87	8	51	0	39	0	60	0.97
8560974--8561026	18	3.1	17	72	5	52	67	1	5	24	1.22
8560974--8561045	35	2.0	37	84	10	96	70	1	4	23	1.12
8561249--8561294	23	2.0	23	95	0	83	54	10	8	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8561270--8561548	42	6.6	41	84	4	310	45	18	12	22	1.83
8561271--8561548	84	3.3	85	84	5	352	45	19	12	23	1.84
8561271--8561548	126	2.2	127	84	7	361	45	19	12	23	1.84
8562570--8562628	14	4.5	13	78	18	59	1	18	1	77	0.93
8562553--8562618	25	2.5	25	85	9	78	4	15	1	78	0.98
8562571--8562623	24	2.2	25	86	10	74	1	18	1	77	0.96
8562555--8562626	26	2.8	25	82	6	81	4	15	1	79	0.96
8571969--8572068	50	2.0	49	86	5	139	47	6	19	28	1.72
8573355--8573705	188	1.9	189	80	12	418	34	11	8	45	1.71
8574698--8576400	181	9.4	180	75	7	982	42	8	8	40	1.67
8574952--8576372	182	7.8	183	74	9	572	42	8	8	40	1.67
8576692--8577071	195	2.0	194	88	2	575	50	16	8	25	1.73
8592695--8592920	38	6.1	36	75	12	136	37	20	9	32	1.85
8592695--8592854	73	2.2	74	87	2	223	38	20	8	33	1.82
8592695--8592874	75	2.4	73	85	1	234	38	19	9	32	1.84
8592744--8592920	75	2.3	75	84	2	212	37	21	10	31	1.87
8592683--8592915	113	2.1	111	80	7	258	37	20	9	32	1.86
8592732--8592920	38	5.1	37	77	6	177	36	21	10	31	1.87
8592901--8592988	37	2.4	37	78	0	95	31	21	15	30	1.95
8604058--8604096	20	2.0	20	89	0	60	48	17	2	30	1.61
8604090--8604127	18	2.1	18	90	0	58	36	21	0	42	1.53
8614497--8614543	16	3.0	15	80	17	51	80	2	10	6	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8617945--8617988	18	2.4	18	84	3	61	65	11	2	20	1.35
8624274--8624312	18	2.2	18	100	0	78	51	12	0	35	1.40
8627294--8627324	15	2.1	15	93	0	53	48	29	6	16	1.70
8629641--8629686	21	2.2	21	84	7	58	47	21	8	21	1.77
8635181--8635252	30	2.4	31	90	4	112	12	6	40	40	1.70
8635308--8635344	18	2.0	20	84	10	51	18	0	40	40	1.51
8635323--8635481	7	24.6	7	73	14	85	18	0	32	49	1.48
8635267--8635402	51	2.7	51	77	17	126	15	2	35	47	1.58
8635336--8635396	20	3.1	20	84	11	81	18	0	31	50	1.47
8635424--8635479	18	3.1	19	75	14	55	14	0	35	50	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126