genome.fa.s667.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  106  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20977451--20977490	17	2.4	17	87	8	55	12	12	5	70	1.33
20981745--20981783	16	2.3	18	87	12	57	33	0	0	66	0.92
20985434--20985486	16	3.3	16	70	0	52	43	1	3	50	1.30
20985862--20985959	48	2.0	48	100	0	196	36	24	6	32	1.80
20986099--20986158	24	2.8	20	75	18	57	18	1	5	75	1.07
20986077--20986138	16	3.8	17	79	12	58	14	6	3	75	1.12
20993198--20993256	24	2.5	24	76	15	59	45	1	1	50	1.21
20993363--20993426	26	2.4	26	72	12	67	35	3	3	57	1.30
20993375--20993502	63	2.0	63	95	0	229	39	2	3	54	1.29
20993936--20993960	12	2.1	12	100	0	50	32	16	0	52	1.44
20993952--20994004	2	27.0	2	76	3	54	47	7	0	45	1.31
20993943--20993993	16	3.2	16	75	5	50	45	11	0	43	1.40
20995339--20995378	18	2.2	19	86	8	57	75	0	22	2	0.93
20995344--20995394	16	3.0	16	82	8	57	70	0	23	5	1.09
20996844--20996868	2	12.5	2	100	0	50	52	0	0	48	1.00
20997600--20997631	15	2.2	14	94	5	55	56	0	43	0	0.99
21004058--21004083	1	26.0	1	100	0	52	0	0	0	100	0.00
21005139--21005176	14	2.6	14	88	12	51	21	0	7	71	1.11
21009821--21009869	25	2.0	24	88	4	71	51	0	2	46	1.12
21009837--21009911	27	2.9	24	79	13	78	52	0	1	46	1.09
21009855--21009909	14	4.0	13	72	27	51	52	0	1	45	1.11
21010110--21010168	18	3.2	18	76	7	57	16	1	6	74	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21010650--21010685	17	2.1	17	89	0	54	61	0	0	38	0.96
21011006--21011054	25	1.9	26	88	12	75	69	2	0	28	1.00
21011016--21011061	18	2.8	17	78	12	51	73	4	0	21	1.00
21011156--21011186	16	1.9	16	93	0	53	45	6	9	38	1.63
21012585--21012644	29	2.2	27	82	8	68	36	1	5	56	1.31
21012771--21012937	63	2.6	63	89	2	246	49	5	5	39	1.48
21022574--21022610	12	3.1	12	84	0	56	72	10	5	10	1.25
21023283--21023326	21	2.0	21	86	8	61	38	0	0	61	0.96
21023328--21023856	267	2.0	257	84	6	668	45	6	4	43	1.50
21023613--21024939	680	2.0	656	85	7	1785	39	7	6	46	1.56
21024566--21024627	20	3.1	21	79	6	67	32	3	9	54	1.49
21031918--21031998	30	2.8	29	83	5	101	66	8	0	24	1.19
21031918--21032001	6	14.3	6	81	9	68	66	8	0	25	1.19
21036711--21036801	47	1.9	48	84	6	123	59	6	7	26	1.50
21038214--21038243	2	15.0	2	100	0	60	50	0	0	50	1.00
21042931--21043004	25	2.8	27	76	14	82	45	4	0	50	1.20
21042931--21042989	25	2.4	24	86	11	84	42	5	0	52	1.23
21044118--21044193	27	2.8	27	79	16	70	31	13	3	51	1.59
21050876--21050915	18	2.3	18	91	4	64	25	12	17	45	1.83
21051782--21051821	22	2.0	21	85	14	57	42	7	15	35	1.75
21054862--21054900	21	1.9	20	89	5	60	17	7	0	74	1.05
21055372--21055402	16	1.9	16	93	0	53	38	3	9	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21055407--21055457	16	3.0	17	77	8	59	35	0	9	54	1.33
21062091--21062130	2	20.0	2	100	0	80	0	50	0	50	1.00
21064209--21064266	28	2.1	28	84	9	75	65	6	0	27	1.18
21064218--21064330	43	2.6	43	81	13	117	64	4	1	29	1.23
21064209--21064276	27	2.5	28	80	7	68	63	5	0	30	1.18
21064246--21064328	18	4.3	18	72	20	60	65	3	2	28	1.22
21064342--21064379	19	2.0	20	89	5	60	60	2	5	31	1.33
21064342--21064385	19	2.2	20	84	8	54	54	2	4	38	1.33
21064477--21064598	9	13.3	9	68	14	72	38	1	3	56	1.25
21064466--21064548	16	5.5	16	68	18	61	37	1	2	59	1.19
21064532--21064598	20	3.3	20	73	17	59	37	1	4	56	1.29
21065755--21065801	23	2.0	23	88	8	69	46	0	8	44	1.33
21065765--21065809	23	2.0	23	83	8	58	46	2	8	42	1.47
21066346--21066392	25	1.9	24	82	4	58	14	4	6	74	1.17
21066491--21066535	9	4.7	10	94	5	76	35	0	0	64	0.94
21066489--21066533	19	2.3	21	85	14	69	33	0	0	66	0.92
21067814--21067838	12	2.1	12	100	0	50	64	0	0	36	0.94
21072949--21073007	26	2.3	24	80	11	64	59	3	5	32	1.36
21082385--21082419	2	17.5	2	100	0	70	0	48	0	51	1.00
21082417--21082451	18	1.9	18	88	11	54	17	8	22	51	1.72
21085000--21085083	41	2.0	41	95	0	150	25	19	33	22	1.97
21102314--21102340	13	2.1	13	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21103051--21103089	13	3.1	13	81	3	53	74	2	0	23	0.94
21103810--21103936	3	39.7	3	70	17	62	65	0	3	30	1.14
21103808--21103956	27	5.6	25	73	18	99	67	1	2	28	1.12
21103827--21103958	60	2.2	59	85	9	178	68	1	2	28	1.11
21103854--21103957	39	2.7	40	79	5	106	69	1	1	26	1.10
21103809--21103950	23	6.5	23	78	14	124	66	1	2	28	1.14
21104070--21104324	136	1.9	136	95	0	465	39	10	12	38	1.77
21109101--21109138	20	1.9	20	94	0	67	10	23	13	52	1.71
21114601--21114638	20	1.9	20	84	10	51	39	10	0	50	1.37
21114598--21114643	19	2.3	20	78	10	51	45	8	0	45	1.34
21114976--21115087	33	3.5	32	77	4	118	50	6	3	40	1.45
21115106--21115169	33	1.9	32	84	12	85	54	4	0	40	1.21
21116463--21116489	12	2.2	12	100	0	54	33	0	29	37	1.58
21116895--21116928	15	2.2	16	89	5	52	50	5	41	2	1.42
21119804--21119849	21	2.2	21	85	14	60	63	4	10	21	1.44
21122286--21123408	352	3.2	347	84	5	1327	40	5	7	46	1.57
21123205--21123656	239	1.9	243	84	4	619	34	5	7	51	1.53
21125346--21125370	11	2.3	11	100	0	50	72	0	0	28	0.86
21127106--21127137	16	1.9	17	93	6	57	56	0	37	6	1.25
21134343--21134450	57	1.9	57	88	0	162	46	3	10	39	1.56
21136226--21136255	1	30.0	1	93	0	51	0	3	0	96	0.21
21136658--21136697	20	2.0	20	95	0	71	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21146618--21146642	10	2.5	10	100	0	50	8	0	0	92	0.40
21148357--21148391	2	17.5	2	100	0	70	48	0	0	51	1.00
21148489--21148549	30	2.2	27	78	16	70	42	24	6	26	1.79
21148496--21148556	30	2.0	30	96	0	113	37	21	11	29	1.88
21148929--21148973	23	2.0	23	95	0	81	55	11	15	17	1.68
21149126--21149373	124	2.0	124	92	0	415	31	17	12	37	1.88
21156062--21156177	6	19.3	6	96	0	214	17	16	31	35	1.92
21156388--21156444	28	2.0	30	82	6	73	31	3	1	63	1.22
21157145--21157184	16	2.4	17	83	4	55	40	2	0	57	1.12
21157355--21157441	31	2.8	32	72	6	81	42	9	3	44	1.53
21157775--21157826	21	2.5	20	87	9	70	69	0	3	26	1.06
21157784--21157831	20	2.5	20	83	13	64	68	2	2	27	1.11
21159663--21159689	14	1.9	14	100	0	54	22	0	0	77	0.76
21159765--21159820	22	2.5	22	77	8	60	39	3	0	57	1.16
21163747--21163787	18	2.3	19	79	12	50	9	12	4	73	1.24
21168607--21168655	23	2.1	24	85	11	66	42	2	2	53	1.24
21168607--21168655	24	2.1	23	85	11	64	42	2	2	53	1.24
21168517--21168863	137	2.5	136	74	17	317	26	10	5	57	1.53
21169964--21169990	11	2.5	11	100	0	54	0	7	0	92	0.38
21172411--21172679	107	2.6	103	79	10	276	45	10	6	37	1.65
21174758--21174789	15	2.1	15	94	0	55	21	0	21	56	1.43
21174770--21174810	22	1.9	21	90	5	64	9	0	36	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21174848--21174892	21	2.1	22	83	4	56	26	0	28	44	1.55
21175626--21175669	21	2.1	21	87	8	63	81	0	4	13	0.83
21175804--21175916	59	1.9	59	85	1	156	34	12	3	49	1.58
21175776--21176020	132	1.8	136	84	6	338	37	10	2	49	1.51
21175990--21176082	44	2.1	43	84	2	114	39	10	3	46	1.55
21175926--21176060	63	2.1	64	81	6	150	41	10	2	45	1.53
21176167--21176192	4	6.5	4	100	0	52	76	0	0	23	0.78
21176473--21176506	12	2.9	12	91	4	52	38	2	0	58	1.13
21176498--21176532	16	2.2	16	89	0	52	34	8	2	54	1.46
21177539--21177594	21	2.6	22	81	15	64	53	0	3	42	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126