genome.fa.s667.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  122  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24228337--24228377	18	2.4	18	92	8	68	2	2	9	85	0.78
24229699--24229763	21	2.8	24	80	19	75	55	0	0	44	0.99
24229696--24229758	23	2.7	23	81	11	76	57	0	0	42	0.99
24229696--24229770	23	3.2	24	78	12	75	57	0	0	42	0.98
24282441--24282493	22	2.4	22	80	0	61	45	0	0	54	0.99
24282458--24282495	11	3.5	11	82	13	51	42	0	0	57	0.98
24283184--24283209	3	8.7	3	100	0	52	65	0	0	34	0.93
24284117--24284159	21	1.9	24	86	13	65	51	0	0	48	1.00
24284097--24284163	22	3.1	22	72	23	61	56	0	0	43	0.99
24284786--24284845	26	2.5	24	79	12	77	38	0	0	61	0.96
24284821--24284863	19	2.2	20	87	4	61	34	4	0	60	1.17
24285139--24285174	18	2.0	18	88	0	54	72	2	0	25	0.98
24286420--24286510	30	3.0	29	80	16	103	52	0	6	40	1.27
24299653--24299677	12	2.1	12	100	0	50	40	0	0	60	0.97
24299855--24299959	29	3.6	29	74	12	90	44	4	0	50	1.23
24303357--24303424	3	22.7	3	96	0	127	33	1	0	64	1.02
24304683--24304707	8	3.1	8	100	0	50	12	0	0	88	0.53
24305743--24305787	19	2.4	19	81	7	56	42	13	8	35	1.75
24306382--24306435	26	2.0	28	85	7	76	62	0	9	27	1.25
24309387--24309428	5	9.0	5	82	15	54	57	0	2	40	1.12
24314837--24314867	15	2.1	15	93	0	53	77	0	0	22	0.77
24314986--24315023	18	2.1	18	90	0	58	55	10	2	31	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24323687--24323754	15	4.7	15	72	15	54	32	1	2	63	1.18
24323690--24323787	29	3.4	28	77	13	90	35	3	2	59	1.25
24323824--24323898	29	2.6	29	77	14	82	56	2	1	40	1.22
24326205--24326244	20	2.0	21	85	5	55	62	5	7	25	1.42
24329090--24329132	22	1.9	22	90	4	68	51	6	11	30	1.65
24335196--24335234	12	3.2	12	82	7	51	61	0	0	38	0.96
24369368--24369407	20	2.0	21	90	5	64	42	2	10	45	1.51
24370486--24370524	21	1.9	21	84	5	53	2	7	7	82	0.94
24370784--24370829	21	2.2	21	88	7	67	36	23	13	26	1.91
24376126--24376226	28	3.6	28	81	5	123	18	1	33	45	1.61
24381313--24381349	2	18.5	2	100	0	74	51	0	0	48	1.00
24382708--24382746	16	2.4	16	82	0	51	41	20	20	17	1.91
24391680--24391735	24	2.3	24	84	0	67	42	5	0	51	1.24
24392519--24392562	23	1.9	23	86	9	63	54	2	9	34	1.44
24392535--24392637	53	1.9	53	88	3	154	45	5	8	39	1.59
24397062--24397095	5	7.0	5	86	6	52	82	14	2	0	0.79
24397062--24397095	15	2.4	14	95	5	59	82	14	2	0	0.79
24398414--24398482	29	2.5	27	77	13	68	39	1	4	55	1.29
24398452--24398541	40	2.3	39	88	3	126	37	1	4	56	1.27
24410627--24410700	38	1.9	39	81	13	91	52	0	1	45	1.09
24411280--24411312	17	1.9	17	93	0	57	9	0	15	75	1.03
24420066--24420872	228	3.5	228	82	2	861	30	24	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24421761--24421816	15	3.7	15	78	7	60	48	0	1	50	1.11
24426131--24426179	22	2.2	23	79	17	59	57	10	8	24	1.59
24428335--24428366	14	2.3	14	94	0	55	59	3	0	37	1.13
24432087--24432127	7	5.9	7	100	0	82	12	43	14	29	1.82
24438590--24438618	2	14.5	2	100	0	58	48	0	0	51	1.00
24442742--24442770	8	3.6	8	100	0	58	79	0	0	20	0.74
24447357--24447426	20	3.8	19	76	16	67	50	2	1	45	1.25
24448784--24448842	30	2.0	30	93	0	100	33	8	11	45	1.71
24449497--24449555	31	1.9	31	92	0	100	25	22	25	27	2.00
24450603--24450658	17	3.1	17	78	14	51	55	0	0	44	0.99
24450587--24450856	146	1.9	143	88	5	409	54	6	4	34	1.46
24450672--24451640	233	4.0	238	83	10	1124	53	5	6	34	1.52
24450888--24451672	251	3.1	250	89	5	1163	52	4	7	35	1.52
24451512--24451545	9	3.6	9	85	14	50	64	0	0	35	0.94
24451580--24451613	18	2.0	17	88	11	52	64	0	8	26	1.22
24451710--24451740	16	2.0	15	93	6	53	54	0	0	45	0.99
24453000--24453034	15	2.3	15	90	0	52	65	0	0	34	0.93
24452984--24453064	36	2.2	37	84	2	110	64	1	0	34	1.02
24453767--24454909	590	1.9	589	97	0	2151	33	13	15	37	1.87
24455037--24455090	23	2.3	23	87	6	74	18	9	25	46	1.79
24457798--24457859	32	1.9	32	90	0	97	19	24	12	43	1.86
24458407--24458530	62	2.0	62	91	0	203	34	27	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24471934--24471971	19	2.0	19	100	0	76	26	31	5	36	1.79
24482532--24482575	16	2.7	16	78	3	52	50	2	0	47	1.13
24482576--24482635	26	2.2	28	82	5	79	56	3	5	35	1.37
24482635--24483619	252	4.0	252	83	10	1174	52	4	7	35	1.50
24483431--24483461	16	2.0	15	93	6	53	45	0	0	54	0.99
24487338--24487380	12	3.7	11	81	6	50	37	0	2	60	1.10
24487338--24487385	23	2.0	24	84	11	64	35	0	4	60	1.16
24487570--24487633	33	2.1	29	82	11	74	50	0	3	46	1.17
24488254--24488280	13	2.1	13	100	0	54	22	0	7	70	1.12
24488938--24488971	17	2.0	17	88	0	50	14	8	2	73	1.19
24489028--24489086	30	2.0	30	86	0	82	33	13	3	49	1.59
24494328--24494358	7	4.4	7	100	0	62	12	12	29	45	1.80
24494328--24494367	21	1.9	21	89	0	62	15	15	27	42	1.86
24494328--24494367	14	2.9	14	92	0	53	15	15	27	42	1.86
24497730--24497755	2	13.0	2	100	0	52	50	0	0	50	1.00
24510585--24510623	17	2.2	18	86	13	55	30	0	0	69	0.89
24510650--24510684	10	3.4	10	92	7	61	51	0	0	48	1.00
24510638--24510684	11	4.2	11	86	10	60	46	0	0	53	1.00
24526011--24526041	2	15.5	2	100	0	62	48	0	0	51	1.00
24526033--24526085	18	2.8	18	80	11	54	32	0	0	67	0.91
24526052--24526107	16	3.5	16	70	15	53	35	0	0	64	0.94
24526031--24526083	23	2.2	24	86	3	72	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24526708--24526740	2	17.5	2	87	12	52	48	0	0	51	1.00
24526951--24527003	21	2.5	21	81	9	63	33	1	3	60	1.26
24527242--24527346	48	2.2	47	79	12	108	45	4	0	48	1.30
24528542--24528749	103	2.0	103	89	1	319	38	12	9	39	1.76
24531417--24531473	24	2.3	24	78	3	60	40	0	5	54	1.23
24531633--24531702	34	2.0	35	83	8	90	25	4	5	64	1.34
24534141--24534291	77	1.9	80	82	5	191	24	16	17	41	1.90
24540259--24540307	15	3.3	15	82	0	71	65	16	2	16	1.37
24540259--24540301	12	3.3	12	79	17	50	65	18	2	13	1.38
24543931--24543981	24	2.1	25	89	10	79	35	9	13	41	1.78
24544259--24544533	91	3.0	91	90	1	433	29	13	32	24	1.94
24544972--24545072	49	2.1	49	94	1	177	53	0	18	27	1.45
24545080--24545115	17	2.1	18	89	5	56	72	0	2	25	0.98
24545382--24545433	20	2.5	21	90	6	79	17	3	3	75	1.11
24549111--24549163	26	2.0	27	85	3	72	56	5	1	35	1.34
24549460--24549502	22	2.0	22	86	4	61	53	0	0	46	1.00
24549687--24549715	14	2.1	14	100	0	58	34	13	0	51	1.42
24552060--24552084	2	12.5	2	100	0	50	52	0	0	48	1.00
24553245--24553468	113	2.0	113	94	0	394	33	17	24	24	1.96
24553904--24553942	20	2.0	19	90	5	60	35	0	0	64	0.94
24553912--24553964	23	2.4	22	77	3	61	41	1	0	56	1.10
24553960--24553999	7	5.9	7	88	5	55	40	5	0	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24554074--24554129	27	2.0	28	86	10	80	62	7	3	26	1.38
24554314--24554342	2	14.5	2	100	0	58	51	0	0	48	1.00
24554467--24554519	24	2.3	22	74	6	52	41	7	5	45	1.56
24565121--24565151	2	16.0	2	93	6	55	51	0	48	0	1.00
24567119--24567159	16	2.6	16	80	3	57	65	0	0	34	0.93
24567138--24567197	25	2.3	25	80	8	66	65	1	3	30	1.19
24567914--24567972	29	2.0	30	90	3	93	55	0	6	37	1.26
24568175--24568199	12	2.1	12	100	0	50	68	0	0	32	0.90
24586759--24586823	20	3.1	21	77	16	57	52	1	0	46	1.10
24587050--24587086	19	2.0	18	89	5	56	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126