genome.fa.s667.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  105  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20867957--20868093	22	6.3	22	66	8	73	36	21	10	32	1.87
20869033--20869601	118	4.8	116	86	4	682	35	13	7	43	1.72
20869033--20869612	59	9.9	57	81	8	614	34	13	7	44	1.72
20869627--20869780	5	30.4	5	69	20	74	77	3	3	16	1.03
20869627--20869783	37	4.3	38	66	18	66	77	3	3	15	1.02
20869647--20869706	17	3.6	17	80	6	61	81	1	5	11	0.91
20869627--20869780	11	15.2	10	70	19	74	77	3	3	16	1.03
20869729--20869783	12	4.6	11	76	14	56	81	1	0	16	0.77
20869642--20869783	39	3.7	38	75	12	130	77	2	3	16	1.03
20870563--20870611	14	3.5	15	73	18	52	75	10	2	12	1.13
20870560--20870609	27	1.9	25	88	8	73	74	10	4	12	1.21
20870559--20870613	25	2.2	23	79	17	65	70	10	5	12	1.31
20870619--20870659	12	3.6	12	78	21	52	60	7	7	24	1.48
20870687--20870831	15	8.4	17	66	25	58	66	4	2	26	1.23
20870795--20870871	26	3.0	25	75	19	79	76	1	1	20	0.93
20870795--20870870	31	2.4	30	81	12	91	76	1	1	21	0.94
20870802--20870871	6	11.3	6	78	17	72	77	1	1	20	0.93
20871926--20871969	19	2.2	20	84	12	54	13	13	9	63	1.51
20872873--20873036	7	24.4	7	71	17	98	46	34	0	19	1.50
20872873--20872931	22	2.7	21	82	7	66	44	32	0	23	1.54
20872914--20873001	33	2.6	33	85	5	115	45	36	0	18	1.49
20872947--20873045	27	3.5	26	76	20	101	46	33	0	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20872912--20873036	46	2.7	46	81	8	141	46	36	0	17	1.49
20872994--20873036	12	3.5	12	90	3	68	48	34	0	16	1.46
20873951--20873982	12	2.7	12	90	0	55	31	0	21	46	1.52
20873966--20874018	19	2.8	19	73	0	52	33	1	18	45	1.61
20875010--20875064	27	2.0	27	85	0	74	32	3	3	60	1.32
20875233--20875263	9	3.3	9	95	4	53	70	0	0	29	0.87
20877959--20878002	22	2.0	22	100	0	88	45	13	9	31	1.75
20883700--20883914	107	2.0	107	97	1	405	27	14	18	39	1.90
20884476--20884528	6	9.3	6	85	8	58	33	9	56	0	1.32
20884722--20884770	4	12.2	4	95	0	62	48	8	0	42	1.32
20888358--20888515	15	11.1	15	73	13	122	48	0	1	50	1.09
20888333--20888529	41	4.9	40	77	15	185	48	0	1	50	1.07
20889603--20889647	4	11.2	4	85	0	54	20	6	2	71	1.20
20889921--20889992	38	1.9	38	83	8	94	43	13	9	33	1.77
20896722--20896767	23	2.0	22	88	12	67	23	0	8	67	1.18
20900351--20900465	18	6.6	18	77	7	103	35	25	5	33	1.78
20900347--20900447	51	2.0	51	84	3	132	35	25	4	33	1.78
20900344--20900497	69	2.2	69	89	2	238	35	26	4	33	1.77
20901960--20902004	20	2.3	19	82	14	56	28	0	2	68	1.01
20906950--20907023	30	2.4	31	82	10	82	25	0	28	45	1.53
20906994--20907132	16	8.8	16	66	19	58	23	2	29	44	1.65
20907090--20907130	15	2.7	14	85	14	55	24	2	24	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20907043--20907129	16	5.4	16	75	5	59	21	2	29	45	1.64
20907315--20907345	11	2.8	11	95	0	53	58	0	3	38	1.15
20908264--20908296	13	2.5	13	95	5	57	15	0	3	81	0.80
20908650--20908703	25	2.2	25	83	9	67	27	0	0	72	0.85
20908650--20908715	25	2.9	21	73	20	60	34	0	0	65	0.93
20908838--20909082	36	6.8	36	71	9	171	44	9	22	22	1.82
20908946--20909064	38	3.3	34	69	20	89	45	9	22	22	1.81
20908934--20909071	74	1.9	74	89	1	215	45	9	21	23	1.81
20908968--20909077	35	3.0	34	71	17	87	46	10	21	21	1.80
20909233--20909303	34	2.1	34	87	10	101	52	9	19	18	1.73
20909417--20909545	69	1.9	69	80	9	156	48	12	19	20	1.81
20909235--20909818	171	3.4	169	79	7	610	46	12	19	21	1.83
20911006--20911049	18	2.5	17	82	7	61	6	0	9	84	0.79
20922429--20922567	16	8.8	16	72	13	90	20	0	29	49	1.49
20922474--20922564	16	5.6	16	78	10	96	16	0	29	53	1.43
20922470--20922553	33	2.5	34	82	5	118	16	0	33	50	1.46
20922553--20922624	30	2.4	30	97	0	135	25	2	29	43	1.69
20922619--20922651	16	2.0	17	94	5	59	12	0	39	48	1.40
20925470--20925499	16	1.9	16	93	6	53	63	6	6	23	1.43
20926366--20926429	33	2.0	32	84	3	83	46	0	3	50	1.17
20926423--20926488	23	2.8	24	80	15	75	57	1	3	37	1.23
20930027--20930076	20	2.4	22	83	6	68	38	20	4	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20931158--20931189	16	2.0	16	93	0	55	40	12	12	34	1.81
20933551--20933633	27	3.1	27	92	0	130	26	39	12	21	1.88
20935654--20935694	19	2.2	19	100	0	82	51	17	0	31	1.46
20936306--20936541	118	2.0	118	98	0	454	30	10	11	47	1.74
20936327--20936566	118	2.1	116	88	3	322	32	9	10	47	1.70
20936589--20936627	3	13.0	3	100	0	78	66	0	0	33	0.92
20937433--20937557	34	3.5	34	68	16	99	35	12	16	36	1.86
20939362--20939396	18	1.9	18	94	0	61	45	0	0	54	0.99
20939402--20939454	21	2.6	21	88	11	83	47	0	0	52	1.00
20939402--20939453	22	2.5	22	93	6	90	48	0	0	51	1.00
20939858--20939954	43	2.2	43	96	3	176	50	12	9	27	1.70
20941996--20942111	61	1.9	60	84	8	153	37	18	11	31	1.87
20942208--20942389	64	2.9	61	77	8	195	40	8	10	40	1.71
20942019--20942346	163	2.0	164	82	7	398	39	14	7	37	1.76
20942170--20942358	64	3.0	64	78	9	219	40	10	8	40	1.70
20942339--20942486	61	2.4	61	77	5	156	40	10	13	35	1.78
20943641--20943688	19	2.5	19	82	0	51	6	10	2	81	0.95
20943792--20943828	16	2.5	15	87	12	51	51	5	8	35	1.55
20945372--20945417	21	2.2	21	92	0	74	26	26	8	39	1.85
20945457--20945514	28	2.1	28	96	0	107	39	5	15	39	1.70
20945461--20945525	28	2.3	28	86	5	87	41	6	15	36	1.72
20945519--20945561	21	2.0	21	95	0	77	39	4	27	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20945542--20945704	63	2.6	62	86	3	220	40	9	19	30	1.84
20945961--20946013	22	2.3	24	81	18	69	52	3	0	43	1.19
20955556--20955870	175	1.8	175	93	1	551	35	11	14	38	1.82
20960044--20960085	11	3.8	11	93	0	75	21	0	28	50	1.49
20960043--20960085	22	2.0	22	100	0	86	23	0	27	48	1.51
20960138--20960266	52	2.5	51	86	6	163	38	7	25	27	1.83
20960832--20960906	25	3.1	25	72	14	68	34	5	34	25	1.79
20961126--20961167	11	3.8	11	93	0	75	21	0	28	50	1.49
20961125--20961167	22	2.0	22	100	0	86	23	0	27	48	1.51
20961192--20961345	52	3.0	52	86	1	193	40	9	25	24	1.84
20964057--20964108	24	2.1	25	82	3	61	61	5	1	30	1.30
20964079--20964118	19	2.2	19	90	4	64	62	10	2	25	1.39
20964094--20964192	25	3.8	25	71	20	80	58	12	5	24	1.53
20964750--20964844	49	1.9	50	86	2	138	61	7	6	25	1.46
20965412--20965491	25	3.4	24	75	16	69	43	8	5	42	1.57
20965524--20965562	2	21.5	2	80	19	50	43	0	0	56	0.99
20965962--20966009	14	3.8	14	74	23	52	33	0	0	66	0.92
20965967--20966013	24	2.0	23	95	4	85	36	0	0	63	0.94
20965971--20966030	24	2.5	23	81	10	59	41	0	0	58	0.98
20967290--20967342	27	2.0	27	96	0	97	18	11	3	66	1.38
20967422--20967469	17	2.9	17	87	3	62	60	12	2	25	1.43
20967422--20967469	16	2.9	16	84	9	53	60	12	2	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20971723--20971760	9	4.6	8	84	15	51	2	0	10	86	0.66
20971723--20971761	16	2.5	15	88	8	60	5	0	10	84	0.76
20972104--20972774	41	16.5	40	68	11	235	37	10	13	38	1.79
20972093--20972778	81	8.5	81	75	7	464	37	11	13	38	1.80
20972185--20972769	122	4.8	123	75	11	465	38	10	12	38	1.78
20973222--20973272	26	2.0	26	84	7	68	29	17	13	39	1.88
20974438--20974478	20	2.0	20	86	9	57	2	24	0	73	0.96
20974841--20974882	14	2.8	15	82	10	50	0	26	4	69	1.08
20974831--20974873	13	3.3	13	78	9	52	0	23	2	74	0.93
20974831--20974900	29	2.5	28	81	6	72	1	25	2	70	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126