genome.fa.s667.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  36  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7461987--7462049	18	3.4	18	76	8	65	74	3	1	20	1.04
7462122--7462165	3	14.7	3	100	0	88	68	31	0	0	0.90
7462164--7462249	3	28.7	3	97	0	163	66	1	0	32	1.00
7463282--7463339	25	2.5	22	74	20	55	48	5	8	37	1.56
7464015--7464057	19	2.3	19	79	0	50	18	11	25	44	1.84
7465366--7465426	31	1.9	31	83	6	77	3	11	8	77	1.11
7465366--7465432	27	2.5	26	79	9	73	4	10	7	77	1.10
7468722--7468756	17	2.0	18	88	5	54	57	0	0	42	0.99
7468874--7468913	2	20.5	2	84	5	55	47	5	0	47	1.24
7469596--7469633	6	6.3	6	100	0	76	15	15	52	15	1.75
7475257--7475296	12	3.3	12	85	0	53	67	10	2	20	1.31
7476823--7476862	3	13.3	3	87	10	55	67	2	0	30	1.04
7479805--7479838	18	1.9	18	88	5	52	64	2	0	32	1.08
7479934--7480057	10	12.3	10	76	8	99	58	5	3	32	1.37
7480280--7480317	16	2.4	16	86	8	51	68	2	2	26	1.16
7480301--7480375	20	3.8	19	75	15	71	62	4	1	32	1.22
7480534--7480568	10	3.5	10	88	0	52	17	2	14	65	1.38
7480644--7480695	20	2.5	21	75	12	63	50	1	1	46	1.23
7480645--7480747	20	5.0	21	70	14	61	38	2	3	54	1.34
7481580--7481637	18	3.2	18	76	9	57	18	3	5	72	1.18
7481580--7481644	25	2.6	25	80	2	78	18	3	6	72	1.19
7481580--7481645	13	5.3	13	75	8	57	18	3	6	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7481580--7481638	12	4.8	12	76	12	57	18	3	5	72	1.17
7482030--7482070	22	1.9	21	85	5	55	9	9	19	60	1.55
7482647--7482689	14	3.3	13	81	15	54	18	6	11	62	1.50
7482734--7482822	25	3.6	25	71	15	85	29	5	8	56	1.53
7482734--7482784	22	2.2	24	82	10	61	25	5	7	60	1.47
7482831--7482880	21	2.4	21	80	3	66	24	10	12	54	1.67
7482857--7482892	16	2.2	16	90	0	54	25	11	8	55	1.62
7486237--7486293	28	2.1	27	87	6	80	45	1	0	52	1.11
7489346--7489414	35	2.0	35	81	16	81	69	1	17	11	1.25
7489925--7489954	15	2.1	15	93	6	53	30	0	13	56	1.37
7490948--7491157	53	3.8	55	76	10	198	29	11	9	49	1.71
7490948--7491157	111	1.9	112	88	3	318	29	11	9	49	1.71
7490953--7491142	58	3.5	52	76	12	195	30	12	10	46	1.75
7491145--7491178	14	2.4	14	95	5	59	11	0	2	85	0.71
7492857--7492997	41	3.4	41	79	0	147	48	15	12	23	1.80
7493235--7493280	23	2.0	22	87	4	65	39	8	13	39	1.75
7493334--7493372	20	2.0	20	84	0	51	33	17	12	35	1.88
7493312--7493509	108	1.8	110	91	2	328	37	16	11	35	1.84
7493485--7493572	25	3.8	23	81	10	90	38	15	9	36	1.80
7493539--7493617	33	2.4	33	89	2	124	40	13	8	36	1.76
7493602--7493729	21	5.8	21	70	16	89	33	15	10	39	1.83
7493625--7493709	25	3.6	24	74	16	88	34	12	11	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7493605--7493731	45	2.8	46	89	3	195	34	14	11	39	1.82
7494090--7494351	63	4.1	63	81	4	274	26	24	11	37	1.90
7495092--7495116	10	2.5	10	100	0	50	8	8	0	84	0.79
7495102--7495155	16	3.5	15	78	14	56	3	18	0	77	0.91
7500809--7500835	14	1.9	14	100	0	54	51	7	7	33	1.58
7500933--7500996	25	2.5	25	84	5	92	78	0	10	10	0.98
7502032--7502091	24	2.5	25	78	15	72	66	15	3	15	1.37
7502756--7502998	84	2.9	84	78	3	229	34	13	18	32	1.90
7503051--7503106	22	2.5	22	76	2	58	32	12	23	32	1.92
7507736--7507823	36	2.5	36	81	1	97	51	20	12	15	1.76
7507962--7507996	18	1.9	18	94	0	61	37	20	25	17	1.94
7508012--7508188	35	5.0	36	74	6	137	53	11	15	19	1.72
7508211--7508406	107	1.8	107	82	5	245	46	14	21	17	1.84
7508381--7508668	71	4.0	70	75	8	231	48	12	21	17	1.80
7508525--7508988	36	13.0	36	68	9	184	48	13	20	17	1.80
7508529--7508797	107	2.5	106	74	7	249	48	14	19	17	1.81
7508211--7508699	142	3.5	140	72	8	373	46	13	21	18	1.83
7508759--7509007	108	2.3	106	78	7	243	48	12	21	17	1.80
7509109--7509185	36	2.2	35	80	2	82	48	18	20	12	1.81
7510999--7511270	138	1.9	139	82	9	336	16	19	9	54	1.70
7511458--7511758	151	2.0	151	96	1	552	27	12	13	46	1.78
7512409--7512828	139	3.0	139	99	0	822	38	7	16	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7517463--7517509	3	15.7	3	95	0	85	36	0	0	63	0.94
7520883--7520925	23	1.9	22	85	4	59	4	6	9	79	1.06
7529837--7529927	47	1.9	47	88	0	137	34	5	16	43	1.71
7530883--7531002	62	2.0	61	80	8	136	33	11	8	46	1.70
7535055--7535102	22	2.2	22	81	7	53	39	8	0	52	1.32
7546785--7546833	15	3.3	15	79	0	53	36	4	6	53	1.45
7549537--7549593	30	2.0	29	86	13	82	54	3	7	35	1.45
7551402--7551461	29	2.1	29	83	0	75	45	11	6	36	1.67
7551637--7551983	180	1.9	183	83	4	452	46	19	11	22	1.82
7555239--7555272	17	1.9	17	88	5	50	38	0	2	58	1.13
7555376--7555472	18	5.9	16	69	13	54	22	1	9	67	1.26
7555461--7555536	9	8.6	9	73	15	61	35	0	1	63	1.03
7555466--7555561	19	5.2	19	73	15	76	39	0	2	58	1.10
7560262--7560312	24	2.1	24	85	0	66	31	13	5	49	1.66
7561850--7561890	9	4.4	9	93	3	64	58	4	0	36	1.20
7561857--7561896	19	2.2	18	86	4	53	60	2	0	37	1.11
7561906--7561957	19	2.7	19	73	5	52	61	11	1	25	1.40
7562074--7562119	23	2.0	22	87	4	65	43	8	2	45	1.47
7562074--7562119	22	2.1	22	84	8	58	43	8	2	45	1.47
7562282--7562328	21	2.3	21	85	3	60	44	4	0	51	1.21
7562658--7562702	2	22.5	2	90	0	72	46	2	2	48	1.26
7563924--7564165	124	1.9	126	87	3	355	39	8	7	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7564856--7564886	2	15.5	2	100	0	62	48	0	0	51	1.00
7569355--7569383	3	9.7	3	100	0	58	31	0	0	68	0.89
7569943--7569987	21	2.2	19	84	11	54	53	2	15	28	1.54
7570882--7570911	3	10.0	3	100	0	60	33	0	0	66	0.92
7575581--7575679	35	2.7	34	82	13	110	39	2	1	57	1.17
7575677--7575721	22	2.0	23	86	4	65	51	0	4	44	1.21
7580205--7580249	20	2.2	20	80	7	56	42	0	2	55	1.12
7583200--7583231	9	3.4	10	87	12	50	59	6	0	34	1.23
7583247--7583298	19	2.7	19	73	5	52	61	11	1	25	1.40
7583415--7583460	22	2.1	22	84	8	58	43	8	2	45	1.47
7583627--7583673	21	2.3	21	85	3	60	44	4	0	51	1.21
7584002--7584042	2	20.5	2	89	0	64	46	2	2	48	1.28
7585265--7585506	124	1.9	126	87	3	355	39	8	7	44	1.63
7585699--7585727	2	14.5	2	100	0	58	48	0	0	51	1.00
7586203--7586237	2	17.5	2	100	0	70	48	0	0	51	1.00
7587984--7588032	21	2.3	21	96	0	89	34	20	0	44	1.52
7590723--7590751	3	9.7	3	100	0	58	31	0	0	68	0.89
7592251--7592286	3	12.0	3	100	0	72	33	0	0	66	0.92
7592477--7592823	190	1.8	190	80	8	413	36	9	8	45	1.66
7593174--7593198	13	1.9	13	100	0	50	8	32	0	60	1.26
7593723--7593758	16	2.2	16	90	5	54	2	11	0	86	0.68
7593797--7593982	42	4.4	41	87	4	255	47	13	13	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7593773--7593982	84	2.5	84	82	3	264	45	16	13	24	1.83
7593967--7593996	14	2.2	13	94	5	51	60	0	10	30	1.30
7593930--7594038	56	1.9	56	90	0	173	48	12	14	23	1.79
7593986--7594085	42	2.4	42	93	1	166	41	16	18	25	1.90
7593888--7594080	98	2.0	98	88	2	289	46	14	15	23	1.83
7605385--7605424	19	2.1	19	100	0	80	35	25	25	15	1.94
7607760--7607829	33	2.1	33	89	0	104	50	10	14	25	1.74
7607955--7608096	32	4.5	32	75	10	87	42	13	28	15	1.85
7610907--7610948	20	2.0	21	86	4	59	16	26	0	57	1.40
7611941--7612169	66	3.7	58	84	12	203	34	12	7	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126