genome.fa.s667.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168492.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_9, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25814696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  74  of  126  ( 15044 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14952230--14952385	59	2.6	59	85	0	204	56	19	2	21	1.54
14957298--14957330	7	4.7	7	85	14	50	42	0	0	57	0.98
14957289--14957330	21	1.9	22	90	9	68	45	0	0	54	0.99
14957791--14957841	16	3.3	16	74	17	54	47	0	1	50	1.12
14957796--14957837	14	2.7	15	82	14	50	47	0	2	50	1.14
14958686--14958718	16	2.0	17	88	5	50	39	0	6	54	1.25
14958694--14958726	17	2.0	17	88	5	50	45	0	3	51	1.16
14959380--14959422	22	2.0	22	86	9	61	39	0	4	55	1.20
14960226--14960254	15	1.9	15	100	0	58	13	20	0	65	1.26
14969097--14969333	118	2.0	117	97	0	447	31	12	10	45	1.75
14969629--14969689	30	2.0	30	96	0	113	44	4	3	47	1.41
14970593--14970619	2	13.5	2	100	0	54	51	0	0	48	1.00
14970878--14970965	38	2.4	38	81	9	94	32	3	2	61	1.25
14975276--14975305	13	2.4	13	94	5	53	20	10	0	70	1.16
14980398--14980468	20	3.2	20	75	24	79	46	4	9	39	1.57
14981820--14981858	20	1.9	20	84	5	51	38	7	0	53	1.30
14987586--14987623	18	2.1	18	85	9	51	10	5	13	71	1.30
14987761--14987818	26	2.4	23	81	13	71	32	8	10	48	1.68
14990825--14990863	6	6.5	6	87	0	60	69	0	28	2	1.02
14994953--14994987	15	2.3	15	90	0	52	31	0	5	62	1.18
14995630--14995678	24	2.1	23	85	7	64	34	2	2	61	1.19
14995842--14995871	14	2.1	15	93	6	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14996492--14996543	16	3.4	15	78	10	61	65	1	0	32	1.04
14997773--14997871	49	2.0	49	98	0	189	26	9	20	44	1.81
15000225--15000270	23	2.0	23	100	0	92	34	13	21	30	1.91
15000616--15000646	13	2.4	13	94	0	53	61	0	25	12	1.32
15004747--15004779	2	16.5	2	100	0	66	51	0	0	48	1.00
15004892--15004932	21	2.0	21	85	0	55	60	4	7	26	1.43
15006835--15006859	13	1.9	13	100	0	50	48	0	8	44	1.32
15017512--15017584	23	3.1	23	73	23	64	42	0	0	57	0.98
15017984--15018046	32	2.0	32	93	3	110	46	14	1	38	1.54
15018893--15018926	15	2.3	15	89	0	50	52	0	2	44	1.16
15023819--15023866	22	2.3	22	89	7	73	29	0	8	62	1.24
15031934--15031958	2	12.5	2	100	0	50	52	0	0	48	1.00
15032237--15032277	16	2.6	16	88	7	57	43	4	0	51	1.23
15032871--15032902	2	16.0	2	100	0	64	50	0	0	50	1.00
15033119--15033157	11	3.5	11	82	6	51	69	0	2	28	1.02
15033119--15033187	12	5.8	12	72	6	52	65	0	1	33	1.02
15035855--15035895	21	1.9	22	85	5	57	68	4	2	24	1.22
15048200--15048837	50	13.0	50	82	6	694	27	12	21	38	1.89
15048200--15048837	149	4.3	147	83	7	724	27	12	21	38	1.89
15049067--15049100	15	2.3	15	89	0	50	70	11	2	14	1.27
15049061--15049122	22	2.9	21	79	9	63	75	6	1	16	1.08
15051515--15051543	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15051838--15051868	2	15.5	2	100	0	62	51	0	0	48	1.00
15057796--15057871	30	2.6	30	87	2	109	40	2	0	56	1.13
15057826--15057873	15	3.2	15	75	0	60	37	0	0	62	0.95
15057907--15057986	28	2.8	28	74	12	72	57	5	1	36	1.28
15060692--15060745	13	4.5	13	80	15	62	51	1	0	46	1.11
15060679--15060738	23	2.6	22	89	7	93	51	3	0	45	1.17
15060757--15060879	16	7.7	16	67	19	60	45	2	4	47	1.34
15061955--15062000	24	2.0	24	86	4	67	50	15	10	23	1.75
15064701--15064791	13	7.1	13	70	13	55	54	1	2	41	1.19
15073084--15073187	51	2.0	51	92	0	172	41	13	19	25	1.88
15075134--15075177	20	2.2	20	84	8	54	2	4	34	59	1.30
15075624--15075679	20	2.8	20	81	5	60	53	0	28	17	1.44
15077869--15077911	22	2.0	21	82	13	52	41	16	11	30	1.83
15086197--15086248	20	2.7	20	85	8	63	69	0	1	28	0.99
15089665--15089734	22	3.3	20	76	11	59	44	12	10	32	1.76
15089887--15089986	19	5.4	18	67	13	51	44	13	14	29	1.82
15089888--15089981	38	2.5	37	81	6	102	42	12	13	30	1.82
15089919--15089977	19	3.2	19	73	4	57	45	15	11	27	1.81
15089928--15090015	18	4.8	18	74	1	68	42	17	14	26	1.87
15089928--15090015	36	2.4	36	84	5	106	42	17	14	26	1.87
15090126--15090208	9	9.1	9	71	21	50	49	14	10	25	1.76
15090125--15090221	45	2.2	45	88	3	142	47	13	11	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15090539--15090636	43	2.3	42	85	5	126	52	14	9	24	1.70
15090652--15090872	77	2.9	76	81	5	255	48	20	11	19	1.80
15090767--15090875	22	5.5	22	62	26	62	50	19	11	18	1.77
15090614--15090876	39	6.8	38	81	6	217	46	19	12	21	1.82
15091318--15091398	22	3.7	21	72	21	51	32	16	19	32	1.94
15091362--15091442	22	3.7	22	77	6	83	29	17	20	32	1.96
15091406--15091458	22	2.4	22	72	12	54	33	13	16	35	1.88
15092918--15092968	19	2.7	19	90	0	84	0	15	0	84	0.63
15092927--15092964	9	4.1	9	93	6	67	0	13	0	86	0.56
15093322--15093351	14	2.1	14	93	0	51	13	3	0	83	0.77
15101265--15101551	144	2.0	144	91	1	468	37	9	13	39	1.78
15102683--15102711	14	2.1	14	93	6	51	31	0	13	55	1.39
15102679--15103033	133	2.6	133	81	7	376	24	10	11	52	1.69
15103041--15103071	1	31.0	1	93	0	53	0	0	3	96	0.21
15102806--15103123	140	2.3	138	80	3	334	22	9	11	55	1.64
15106110--15106314	101	2.0	102	87	4	299	34	14	14	36	1.87
15106609--15106773	44	3.7	44	78	8	147	32	13	12	42	1.81
15106589--15106772	22	8.2	23	71	7	110	32	12	11	44	1.78
15108087--15108134	18	2.6	18	80	6	60	56	2	10	31	1.45
15108398--15108435	15	2.3	17	86	13	53	21	0	0	78	0.74
15108481--15108550	18	3.9	18	69	12	54	34	1	2	61	1.20
15111118--15111142	6	4.2	6	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15114791--15114874	42	2.0	42	95	0	150	27	9	21	41	1.84
15123685--15123746	8	8.3	7	75	10	52	19	3	3	74	1.10
15125407--15125664	129	2.0	135	83	7	334	25	7	11	55	1.61
15127929--15128035	50	2.1	53	82	8	132	27	11	18	42	1.84
15127990--15128167	70	2.5	70	81	0	194	26	13	16	43	1.85
15128099--15128154	25	2.2	25	84	6	78	30	14	14	41	1.85
15128437--15128507	32	2.2	32	85	5	90	39	11	16	32	1.84
15128696--15128986	102	2.7	106	80	10	274	34	13	14	37	1.86
15129161--15129411	22	11.2	23	69	16	125	33	13	10	41	1.79
15129336--15129376	21	2.0	20	85	4	55	26	4	17	51	1.65
15129172--15129411	66	3.6	64	76	11	207	32	13	11	42	1.79
15129161--15129421	88	2.9	88	79	7	269	33	13	11	42	1.79
15130377--15130471	20	4.7	19	77	14	84	60	5	2	32	1.31
15130385--15130460	10	7.7	9	73	16	53	59	5	2	32	1.34
15130372--15130440	11	6.5	11	78	8	72	60	8	1	28	1.35
15130382--15130489	20	5.3	20	75	11	69	61	3	1	33	1.25
15130581--15130655	25	3.0	24	73	7	69	60	6	4	29	1.41
15130649--15130710	18	3.3	19	75	4	54	56	3	3	37	1.32
15130691--15130778	27	3.2	26	76	10	70	54	2	5	37	1.37
15130705--15130858	29	5.3	28	71	12	87	60	5	3	30	1.37
15131052--15131129	19	4.2	19	69	12	63	34	1	3	60	1.23
15131095--15131141	19	2.4	19	89	3	67	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15131084--15131170	10	8.7	10	72	5	68	34	0	6	58	1.25
15131131--15131170	21	1.9	21	89	0	62	30	0	12	57	1.36
15132040--15132084	2	22.5	2	100	0	90	48	51	0	0	1.00
15133302--15133356	22	2.4	23	84	6	67	29	14	7	49	1.70
15137482--15137561	42	1.9	42	92	0	133	26	8	27	37	1.86
15140294--15140324	2	15.5	2	93	0	53	51	0	0	48	1.00
15142791--15143131	131	2.5	134	81	9	381	24	9	12	53	1.68
15145532--15145720	71	2.7	70	83	2	218	28	14	13	43	1.83
15145543--15145714	70	2.4	71	84	2	213	27	15	14	42	1.86
15146245--15146449	101	2.0	101	84	2	268	31	14	15	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126